RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 GRIK5Q16478 980 aa16.18■□□□□ 0.18
LIMS1-204ENST00000409441 SPTY2D1Q68D10 685 aaPredicted RBP16.18■□□□□ 0.18
LIMS1-204ENST00000409441 DPY19L2Q6NUT2 758 aa16.18■□□□□ 0.18
LIMS1-204ENST00000409441 HSCBQ8IWL3 235 aa16.18■□□□□ 0.18
LIMS1-204ENST00000409441 GPC2Q8N158 579 aa16.18■□□□□ 0.18
LIMS1-204ENST00000409441 ZC3H4Q9UPT8 1303 aaKnown RBP16.17■□□□□ 0.18
LIMS1-204ENST00000409441 SCN9AQ15858 1988 aa16.17■□□□□ 0.18
LIMS1-204ENST00000409441 DDNO94850 711 aaPredicted RBP16.16■□□□□ 0.18
LIMS1-204ENST00000409441 LDHBP07195 334 aaKnown RBP16.16■□□□□ 0.18
LIMS1-204ENST00000409441 DSG3P32926 999 aa16.16■□□□□ 0.18
LIMS1-204ENST00000409441 AGBL3Q8NEM8 1001 aa16.16■□□□□ 0.18
LIMS1-204ENST00000409441 RILPL2Q969X0 211 aa16.16■□□□□ 0.18
LIMS1-204ENST00000409441 EVI5LQ96CN4 794 aa16.16■□□□□ 0.18
LIMS1-204ENST00000409441 GMLQ99445 158 aa16.16■□□□□ 0.18
LIMS1-204ENST00000409441 RAI14Q9P0K7 980 aa16.16■□□□□ 0.18
LIMS1-204ENST00000409441 SUGT1Q9Y2Z0 365 aa16.16■□□□□ 0.18
LIMS1-204ENST00000409441 U3KPZ7 1027 aaPredicted RBP16.16■□□□□ 0.18
LIMS1-204ENST00000409441 MYO3BQ8WXR4 1341 aa16.16■□□□□ 0.18
LIMS1-204ENST00000409441 AKAP11Q9UKA4 1901 aa16.16■□□□□ 0.18
LIMS1-204ENST00000409441 DICER1Q9UPY3 1922 aaKnown RBP16.16■□□□□ 0.18
LIMS1-204ENST00000409441 F8W031 263 aaPredicted RBP16.16■□□□□ 0.18
LIMS1-204ENST00000409441 IDH1O75874 414 aaKnown RBP16.16■□□□□ 0.18
LIMS1-204ENST00000409441 SDSP20132 328 aa16.16■□□□□ 0.18
LIMS1-204ENST00000409441 PRDX5P30044 214 aa16.16■□□□□ 0.18
LIMS1-204ENST00000409441 KIAA0825Q8IV33 1275 aa16.16■□□□□ 0.18
LIMS1-204ENST00000409441 AK9Q5TCS8 1911 aa16.15■□□□□ 0.18
LIMS1-204ENST00000409441 GLTPD2A6NH11 291 aa16.15■□□□□ 0.18
LIMS1-204ENST00000409441 CAPN15O75808 1086 aa16.15■□□□□ 0.18
LIMS1-204ENST00000409441 RPS12P25398 132 aaKnown RBP16.15■□□□□ 0.18
LIMS1-204ENST00000409441 GMPSP49915 693 aaPredicted RBP16.15■□□□□ 0.18
LIMS1-204ENST00000409441 MAP3K12Q12852 859 aa16.15■□□□□ 0.18
LIMS1-204ENST00000409441 CNTROBQ8N137 903 aa16.15■□□□□ 0.18
LIMS1-204ENST00000409441 KBTBD3Q8NAB2 608 aa16.15■□□□□ 0.18
LIMS1-204ENST00000409441 TTF2Q9UNY4 1162 aaKnown RBP16.15■□□□□ 0.18
LIMS1-204ENST00000409441 USP17L8P0C7I0 530 aa16.14■□□□□ 0.17
LIMS1-204ENST00000409441 MECOMQ03112 1051 aa16.14■□□□□ 0.17
LIMS1-204ENST00000409441 DPF2Q92785 391 aa16.14■□□□□ 0.17
LIMS1-204ENST00000409441 FSD1Q9BTV5 496 aa16.14■□□□□ 0.17
LIMS1-204ENST00000409441 DEKP35659 375 aaKnown RBP16.13■□□□□ 0.17
LIMS1-204ENST00000409441 SLC9C2Q5TAH2 1124 aa16.13■□□□□ 0.17
LIMS1-204ENST00000409441 DZIP1Q86YF9 867 aaKnown RBP16.13■□□□□ 0.17
LIMS1-204ENST00000409441 OGFOD1Q8N543 542 aa16.13■□□□□ 0.17
LIMS1-204ENST00000409441 NSUN4Q96CB9 384 aaKnown RBP16.13■□□□□ 0.17
LIMS1-204ENST00000409441 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.13■□□□□ 0.17
LIMS1-204ENST00000409441 CNOT7Q9UIV1 285 aaKnown RBP16.13■□□□□ 0.17
LIMS1-204ENST00000409441 IGSF3O75054 1194 aa16.12■□□□□ 0.17
LIMS1-204ENST00000409441 SCNN1DP51172 638 aa16.12■□□□□ 0.17
LIMS1-204ENST00000409441 ZNF384Q8TF68 577 aa16.12■□□□□ 0.17
LIMS1-204ENST00000409441 KIF2CQ99661 725 aa16.12■□□□□ 0.17
LIMS1-204ENST00000409441 NAA16Q6N069 864 aaPredicted RBP16.12■□□□□ 0.17
LIMS1-204ENST00000409441 MAGEB6Q8N7X4 407 aa16.12■□□□□ 0.17
LIMS1-204ENST00000409441 MRIQ9BWK5 157 aa16.12■□□□□ 0.17
LIMS1-204ENST00000409441 SLKQ9H2G2 1235 aaPredicted RBP16.12■□□□□ 0.17
LIMS1-204ENST00000409441 HDAC9Q9UKV0 1011 aa16.12■□□□□ 0.17
LIMS1-204ENST00000409441 SHTN1A0MZ66 631 aa16.11■□□□□ 0.17
LIMS1-204ENST00000409441 RNF113AO15541 343 aaKnown RBP16.11■□□□□ 0.17
LIMS1-204ENST00000409441 REC8O95072 547 aa16.11■□□□□ 0.17
LIMS1-204ENST00000409441 CHGBP05060 677 aa16.11■□□□□ 0.17
LIMS1-204ENST00000409441 PDE6AP16499 860 aa16.11■□□□□ 0.17
LIMS1-204ENST00000409441 GSTO1P78417 241 aa16.11■□□□□ 0.17
LIMS1-204ENST00000409441 HDLBPQ00341 1268 aaKnown RBP16.11■□□□□ 0.17
LIMS1-204ENST00000409441 DIXDC1Q155Q3 683 aa16.11■□□□□ 0.17
LIMS1-204ENST00000409441 LRRFIP1Q32MZ4 808 aaKnown RBP16.11■□□□□ 0.17
LIMS1-204ENST00000409441 ZSCAN25Q6NSZ9 544 aa16.11■□□□□ 0.17
LIMS1-204ENST00000409441 MICALL2Q8IY33 904 aa16.11■□□□□ 0.17
LIMS1-204ENST00000409441 GPRC5DQ9NZD1 345 aa16.11■□□□□ 0.17
LIMS1-204ENST00000409441 MAST3O60307 1309 aa16.1■□□□□ 0.17
LIMS1-204ENST00000409441 H7C1D1 291 aa16.1■□□□□ 0.17
LIMS1-204ENST00000409441 LDHCP07864 332 aa16.1■□□□□ 0.17
LIMS1-204ENST00000409441 CYP7A1P22680 504 aa16.1■□□□□ 0.17
LIMS1-204ENST00000409441 ADD2P35612 726 aa16.1■□□□□ 0.17
LIMS1-204ENST00000409441 MMP14P50281 582 aa16.1■□□□□ 0.17
LIMS1-204ENST00000409441 ZNF280AP59817 542 aaPredicted RBP16.1■□□□□ 0.17
LIMS1-204ENST00000409441 SLFNL1Q499Z3 407 aa16.1■□□□□ 0.17
LIMS1-204ENST00000409441 TICAM2Q86XR7 235 aa16.1■□□□□ 0.17
LIMS1-204ENST00000409441 SLF2Q8IX21 1173 aa16.1■□□□□ 0.17
LIMS1-204ENST00000409441 L3MBTL3Q96JM7 780 aaPredicted RBP16.1■□□□□ 0.17
LIMS1-204ENST00000409441 USP26Q9BXU7 913 aa16.1■□□□□ 0.17
LIMS1-204ENST00000409441 CHMP5Q9NZZ3 219 aa16.1■□□□□ 0.17
LIMS1-204ENST00000409441 SERPINA10Q9UK55 444 aa16.1■□□□□ 0.17
LIMS1-204ENST00000409441 MYH13Q9UKX3 1938 aa16.1■□□□□ 0.17
LIMS1-204ENST00000409441 TIAM2Q8IVF5 1701 aa16.09■□□□□ 0.17
LIMS1-204ENST00000409441 ZFYP08048 801 aaPredicted RBP16.09■□□□□ 0.17
LIMS1-204ENST00000409441 LMOD1P29536 600 aaPredicted RBP16.09■□□□□ 0.17
LIMS1-204ENST00000409441 EPS15P42566 896 aa16.09■□□□□ 0.17
LIMS1-204ENST00000409441 CRKP46108 304 aa16.09■□□□□ 0.17
LIMS1-204ENST00000409441 RBM5P52756 815 aaKnown RBP eCLIP16.09■□□□□ 0.17
LIMS1-204ENST00000409441 RABEP1Q15276 862 aa16.09■□□□□ 0.17
LIMS1-204ENST00000409441 UBE3CQ15386 1083 aa16.09■□□□□ 0.17
LIMS1-204ENST00000409441 TMED8Q6PL24 325 aaPredicted RBP16.09■□□□□ 0.17
LIMS1-204ENST00000409441 HHIPL2Q6UWX4 724 aa16.09■□□□□ 0.17
LIMS1-204ENST00000409441 TEKT1Q969V4 418 aa16.09■□□□□ 0.17
LIMS1-204ENST00000409441 FAM163AQ96GL9 167 aaPredicted RBP16.09■□□□□ 0.17
LIMS1-204ENST00000409441 ZNF532Q9HCE3 1301 aa16.09■□□□□ 0.17
LIMS1-204ENST00000409441 TCRBV5S4A2TA0A5A2 114 aa16.08■□□□□ 0.17
LIMS1-204ENST00000409441 RBM26Q5T8P6 1007 aaKnown RBP16.08■□□□□ 0.17
LIMS1-204ENST00000409441 PSME4Q14997 1843 aa16.08■□□□□ 0.17
LIMS1-204ENST00000409441 CFAP100Q494V2 611 aa16.08■□□□□ 0.16
LIMS1-204ENST00000409441 SAMD7Q7Z3H4 446 aa16.08■□□□□ 0.16
LIMS1-204ENST00000409441 ADGRA1Q86SQ6 560 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms