RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 CD33P20138 364 aa7.23□□□□□ -1.25
CLK1-202ENST00000409403 GRIN2CQ14957 1233 aa7.23□□□□□ -1.25
CLK1-202ENST00000409403 FOXR1Q6PIV2 292 aa7.23□□□□□ -1.25
CLK1-202ENST00000409403 TREML4Q6UXN2 200 aa7.23□□□□□ -1.25
CLK1-202ENST00000409403 GALNT12Q8IXK2 581 aa7.23□□□□□ -1.25
CLK1-202ENST00000409403 OR13H1Q8NG92 308 aa7.23□□□□□ -1.25
CLK1-202ENST00000409403 EPS8L3Q8TE67 593 aaKnown RBP7.23□□□□□ -1.25
CLK1-202ENST00000409403 TRERF1Q96PN7 1200 aa7.23□□□□□ -1.25
CLK1-202ENST00000409403 NPHS2Q9NP85 383 aa7.23□□□□□ -1.25
CLK1-202ENST00000409403 ZFATQ9P243 1243 aa7.23□□□□□ -1.25
CLK1-202ENST00000409403 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.23□□□□□ -1.25
CLK1-202ENST00000409403 AK5Q9Y6K8 562 aa7.23□□□□□ -1.25
CLK1-202ENST00000409403 NKTRP30414 1462 aaKnown RBP7.23□□□□□ -1.25
CLK1-202ENST00000409403 GLI3P10071 1580 aa7.23□□□□□ -1.25
CLK1-202ENST00000409403 NCOA2Q15596 1464 aa7.22□□□□□ -1.25
CLK1-202ENST00000409403 MARF1Q9Y4F3 1742 aaKnown RBP7.22□□□□□ -1.25
CLK1-202ENST00000409403 CDC14CA4D256 554 aa7.22□□□□□ -1.25
CLK1-202ENST00000409403 PHF20L1A8MW92 1017 aa7.22□□□□□ -1.25
CLK1-202ENST00000409403 GIPC1O14908 333 aa7.22□□□□□ -1.25
CLK1-202ENST00000409403 NFKB1P19838 968 aa7.22□□□□□ -1.25
CLK1-202ENST00000409403 FGFR3P22607 806 aa7.22□□□□□ -1.25
CLK1-202ENST00000409403 IRS1P35568 1242 aa7.22□□□□□ -1.25
CLK1-202ENST00000409403 FAM182BQ5T319 152 aa7.22□□□□□ -1.25
CLK1-202ENST00000409403 PI16Q6UXB8 463 aa7.22□□□□□ -1.25
CLK1-202ENST00000409403 CCDC136Q96JN2 1154 aa7.22□□□□□ -1.25
CLK1-202ENST00000409403 TRPC5Q9UL62 973 aaPredicted RBP7.22□□□□□ -1.25
CLK1-202ENST00000409403 VPS8Q8N3P4 1428 aa7.22□□□□□ -1.25
CLK1-202ENST00000409403 CAMSAP2Q08AD1 1489 aa7.22□□□□□ -1.25
CLK1-202ENST00000409403 ARHGAP23Q9P227 1491 aa7.22□□□□□ -1.25
CLK1-202ENST00000409403 SCAMP3O14828 347 aaKnown RBP7.22□□□□□ -1.25
CLK1-202ENST00000409403 MAP3K6O95382 1288 aa7.22□□□□□ -1.25
CLK1-202ENST00000409403 ADAMTS2O95450 1211 aa7.22□□□□□ -1.25
CLK1-202ENST00000409403 EIF4BP23588 611 aaKnown RBP7.22□□□□□ -1.25
CLK1-202ENST00000409403 LCE2AQ5TA79 106 aaPredicted RBP7.22□□□□□ -1.25
CLK1-202ENST00000409403 SLC30A3Q99726 388 aa7.22□□□□□ -1.25
CLK1-202ENST00000409403 USP21Q9UK80 565 aa7.22□□□□□ -1.25
CLK1-202ENST00000409403 MIA2Q96PC5 1412 aa7.21□□□□□ -1.25
CLK1-202ENST00000409403 A2MP01023 1474 aa7.21□□□□□ -1.25
CLK1-202ENST00000409403 ANP32CO43423 234 aa7.21□□□□□ -1.26
CLK1-202ENST00000409403 CYP2E1P05181 493 aaPredicted RBP7.21□□□□□ -1.26
CLK1-202ENST00000409403 PSAPP07602 524 aa7.21□□□□□ -1.26
CLK1-202ENST00000409403 EDN3P14138 238 aa7.21□□□□□ -1.26
CLK1-202ENST00000409403 SOX18P35713 384 aa7.21□□□□□ -1.26
CLK1-202ENST00000409403 VEGFBP49765 207 aa7.21□□□□□ -1.26
CLK1-202ENST00000409403 TMEM87AQ8NBN3 555 aa7.21□□□□□ -1.26
CLK1-202ENST00000409403 BHMTQ93088 406 aa7.21□□□□□ -1.26
CLK1-202ENST00000409403 C12orf49Q9H741 205 aa7.21□□□□□ -1.26
CLK1-202ENST00000409403 KANSL3Q9P2N6 904 aa7.21□□□□□ -1.26
CLK1-202ENST00000409403 PPP1R1BQ9UD71 204 aaPredicted RBP7.21□□□□□ -1.26
CLK1-202ENST00000409403 MYOM1P52179 1685 aa7.21□□□□□ -1.26
CLK1-202ENST00000409403 PNPLA6Q8IY17 1366 aa7.21□□□□□ -1.26
CLK1-202ENST00000409403 NRKQ7Z2Y5 1582 aa7.2□□□□□ -1.26
CLK1-202ENST00000409403 NUP188Q5SRE5 1749 aa7.2□□□□□ -1.26
CLK1-202ENST00000409403 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.2□□□□□ -1.26
CLK1-202ENST00000409403 GPR25O00155 361 aa7.2□□□□□ -1.26
CLK1-202ENST00000409403 LDLRAD1Q5T700 205 aa7.2□□□□□ -1.26
CLK1-202ENST00000409403 SV2AQ7L0J3 742 aa7.2□□□□□ -1.26
CLK1-202ENST00000409403 RAB44Q7Z6P3 723 aaPredicted RBP7.2□□□□□ -1.26
CLK1-202ENST00000409403 VWA5B2Q8N398 1253 aa7.2□□□□□ -1.26
CLK1-202ENST00000409403 CRELD1Q96HD1 420 aa7.2□□□□□ -1.26
CLK1-202ENST00000409403 IPO9Q96P70 1041 aaKnown RBP7.2□□□□□ -1.26
CLK1-202ENST00000409403 TLR7Q9NYK1 1049 aaKnown RBP7.2□□□□□ -1.26
CLK1-202ENST00000409403 SETD5Q9C0A6 1442 aa7.2□□□□□ -1.26
CLK1-202ENST00000409403 GPATCH8Q9UKJ3 1502 aaKnown RBP7.2□□□□□ -1.26
CLK1-202ENST00000409403 UTRNP46939 3433 aa7.2□□□□□ -1.26
CLK1-202ENST00000409403 CFAP65Q6ZU64 1925 aaKnown RBP7.19□□□□□ -1.26
CLK1-202ENST00000409403 GADD45BO75293 160 aaPredicted RBP7.19□□□□□ -1.26
CLK1-202ENST00000409403 PLAURQ03405 335 aa7.19□□□□□ -1.26
CLK1-202ENST00000409403 NANOS1Q8WY41 292 aaKnown RBP7.19□□□□□ -1.26
CLK1-202ENST00000409403 OSBPL7Q9BZF2 842 aa7.19□□□□□ -1.26
CLK1-202ENST00000409403 SRCIN1Q9C0H9 1055 aa7.19□□□□□ -1.26
CLK1-202ENST00000409403 WASHC2AQ641Q2 1341 aa7.19□□□□□ -1.26
CLK1-202ENST00000409403 SLIT1O75093 1534 aa7.19□□□□□ -1.26
CLK1-202ENST00000409403 ASXL1Q8IXJ9 1541 aa7.19□□□□□ -1.26
CLK1-202ENST00000409403 HOXD8P13378 290 aaPredicted RBP7.19□□□□□ -1.26
CLK1-202ENST00000409403 LTKP29376 864 aa7.19□□□□□ -1.26
CLK1-202ENST00000409403 CTBSQ01459 385 aa7.19□□□□□ -1.26
CLK1-202ENST00000409403 DHX32Q7L7V1 743 aaKnown RBP7.19□□□□□ -1.26
CLK1-202ENST00000409403 BCO2Q9BYV7 579 aa7.19□□□□□ -1.26
CLK1-202ENST00000409403 SUV39H2Q9H5I1 410 aa7.19□□□□□ -1.26
CLK1-202ENST00000409403 SALL4Q9UJQ4 1053 aa7.19□□□□□ -1.26
CLK1-202ENST00000409403 PRR12Q9ULL5 1215 aa7.19□□□□□ -1.26
CLK1-202ENST00000409403 RALGAPBQ86X10 1494 aa7.19□□□□□ -1.26
CLK1-202ENST00000409403 RREB1Q92766 1687 aa7.18□□□□□ -1.26
CLK1-202ENST00000409403 SYCP2Q9BX26 1530 aa7.18□□□□□ -1.26
CLK1-202ENST00000409403 WASHC2CQ9Y4E1 1318 aa7.18□□□□□ -1.26
CLK1-202ENST00000409403 PPM1GO15355 546 aaPredicted RBP7.18□□□□□ -1.26
CLK1-202ENST00000409403 BAG6P46379 1132 aa7.18□□□□□ -1.26
CLK1-202ENST00000409403 HYAL2Q12891 473 aa7.18□□□□□ -1.26
CLK1-202ENST00000409403 NCAPG2Q86XI2 1143 aa7.18□□□□□ -1.26
CLK1-202ENST00000409403 FAM8A1Q9UBU6 413 aa7.18□□□□□ -1.26
CLK1-202ENST00000409403 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.18□□□□□ -1.26
CLK1-202ENST00000409403 CHD2O14647 1828 aaKnown RBP7.17□□□□□ -1.26
CLK1-202ENST00000409403 CDC42BPAQ5VT25 1732 aa7.17□□□□□ -1.26
CLK1-202ENST00000409403 WFS1O76024 890 aa7.17□□□□□ -1.26
CLK1-202ENST00000409403 KIF4AO95239 1232 aa7.17□□□□□ -1.26
CLK1-202ENST00000409403 CTSHP09668 335 aa7.17□□□□□ -1.26
CLK1-202ENST00000409403 NRLP54845 237 aa7.17□□□□□ -1.26
CLK1-202ENST00000409403 KIAA0319Q5VV43 1072 aa7.17□□□□□ -1.26
CLK1-202ENST00000409403 PEAR1Q5VY43 1037 aaPredicted RBP7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms