RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 MRPL50Q8N5N7 158 aaKnown RBP6.85□□□□□ -1.31
SCN1A-203ENST00000409050 P3H4Q92791 437 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 NOX5Q96PH1 765 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 MBIPQ9NS73 344 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 FAN1Q9Y2M0 1017 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 ATP6V0A2Q9Y487 856 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 BUB1BO60566 1050 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-203ENST00000409050 PHACTR2O75167 634 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 FAM13AO94988 1023 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 EVCP57679 992 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 NAA16Q6N069 864 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-203ENST00000409050 DTHD1Q6ZMT9 781 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 TEX14Q8IWB6 1497 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 A0A1B0GVL5 298 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 CALUO43852 315 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-203ENST00000409050 EPB41P11171 864 aaKnown RBP6.85□□□□□ -1.31
SCN1A-203ENST00000409050 YWHAEP62258 255 aaKnown RBP6.85□□□□□ -1.31
SCN1A-203ENST00000409050 AOPEPQ8N6M6 819 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 IWS1Q96ST2 819 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 BAG1Q99933 345 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-203ENST00000409050 TM6SF1Q9BZW5 370 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 FAM169AQ9Y6X4 670 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 ZWINTO95229 277 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 RUFY3Q7L099 469 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 MCM10Q7L590 875 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 MICU3Q86XE3 530 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 ZC3H15Q8WU90 426 aaKnown RBP6.85□□□□□ -1.31
SCN1A-203ENST00000409050 MIS12Q9H081 205 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 FLT4P35916 1363 aa6.84□□□□□ -1.31
SCN1A-203ENST00000409050 DEXIO95424 95 aa6.84□□□□□ -1.31
SCN1A-203ENST00000409050 XRCC6P12956 609 aaKnown RBP eCLIP6.84□□□□□ -1.31
SCN1A-203ENST00000409050 ERCC5P28715 1186 aaPredicted RBP6.84□□□□□ -1.31
SCN1A-203ENST00000409050 CCT2P78371 535 aaKnown RBP6.84□□□□□ -1.31
SCN1A-203ENST00000409050 INF2Q27J81 1249 aa6.84□□□□□ -1.31
SCN1A-203ENST00000409050 EYA3Q99504 573 aa6.84□□□□□ -1.31
SCN1A-203ENST00000409050 SLC8A3P57103 927 aa6.84□□□□□ -1.31
SCN1A-203ENST00000409050 SV2BQ7L1I2 683 aa6.84□□□□□ -1.31
SCN1A-203ENST00000409050 TTC6Q86TZ1 520 aa6.84□□□□□ -1.31
SCN1A-203ENST00000409050 MICALL1Q8N3F8 863 aa6.84□□□□□ -1.31
SCN1A-203ENST00000409050 VCX3AQ9NNX9 186 aa6.84□□□□□ -1.31
SCN1A-203ENST00000409050 TPCN1Q9ULQ1 816 aa6.84□□□□□ -1.31
SCN1A-203ENST00000409050 SPDYE3A6NKU9 549 aa6.84□□□□□ -1.31
SCN1A-203ENST00000409050 SMARCA5O60264 1052 aaPredicted RBP6.84□□□□□ -1.31
SCN1A-203ENST00000409050 WHAMMP3Q1A5X7 153 aa6.84□□□□□ -1.31
SCN1A-203ENST00000409050 TRIML1Q8N9V2 468 aa6.84□□□□□ -1.31
SCN1A-203ENST00000409050 BBOF1Q8ND07 529 aa6.84□□□□□ -1.31
SCN1A-203ENST00000409050 SMARCC2Q8TAQ2 1214 aa6.84□□□□□ -1.31
SCN1A-203ENST00000409050 SEC62Q99442 399 aaKnown RBP6.84□□□□□ -1.31
SCN1A-203ENST00000409050 TFIP11Q9UBB9 837 aaKnown RBP6.84□□□□□ -1.31
SCN1A-203ENST00000409050 FRMD4BQ9Y2L6 1034 aa6.84□□□□□ -1.31
SCN1A-203ENST00000409050 PDE6BP35913 854 aa6.84□□□□□ -1.32
SCN1A-203ENST00000409050 KIF11P52732 1056 aa6.84□□□□□ -1.32
SCN1A-203ENST00000409050 NAPAP54920 295 aa6.84□□□□□ -1.32
SCN1A-203ENST00000409050 IRX3P78415 501 aaPredicted RBP6.84□□□□□ -1.32
SCN1A-203ENST00000409050 GSTA5Q7RTV2 222 aa6.84□□□□□ -1.32
SCN1A-203ENST00000409050 HAUS8Q9BT25 410 aa6.84□□□□□ -1.32
SCN1A-203ENST00000409050 RAB17Q9H0T7 212 aa6.84□□□□□ -1.32
SCN1A-203ENST00000409050 CLSTN2Q9H4D0 955 aa6.84□□□□□ -1.32
SCN1A-203ENST00000409050 MAGEF1Q9HAY2 307 aa6.84□□□□□ -1.32
SCN1A-203ENST00000409050 UTP11Q9Y3A2 253 aaKnown RBP6.84□□□□□ -1.32
SCN1A-203ENST00000409050 NESP48681 1621 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 CCDC117Q8IWD4 279 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-203ENST00000409050 CDAN1Q8IWY9 1227 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 NCAPGQ9BPX3 1015 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 LARSQ9P2J5 1176 aaKnown RBP6.83□□□□□ -1.32
SCN1A-203ENST00000409050 RABGAP1Q9Y3P9 1069 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 GRIN2AQ12879 1464 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 UBXN1Q04323 297 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 RNASELQ05823 741 aaKnown RBP6.83□□□□□ -1.32
SCN1A-203ENST00000409050 NEDD9Q14511 834 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 GIMAP6Q6P9H5 292 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 PAG1Q9NWQ8 432 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 H0YCG3 227 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 LUC7L3O95232 432 aaKnown RBP6.83□□□□□ -1.32
SCN1A-203ENST00000409050 ABCD1P33897 745 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 PPP1R7Q15435 360 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 WDR44Q5JSH3 913 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 MYRIPQ8NFW9 859 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 TRAF3IP1Q8TDR0 691 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-203ENST00000409050 PPP1R12CQ9BZL4 782 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 THEGQ9P2T0 379 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 ODF2LQ9ULJ1 636 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 TCOF1Q13428 1488 aaKnown RBP6.83□□□□□ -1.32
SCN1A-203ENST00000409050 BIN1O00499 593 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 TPD52P55327 224 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-203ENST00000409050 PPP2R3AQ06190 1150 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 MCM6Q14566 821 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 PARP10Q53GL7 1025 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 Q6ZUG5 572 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 ARMC9Q7Z3E5 817 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 MMRN2Q9H8L6 949 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 PFDN4Q9NQP4 134 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 DENND2AQ9ULE3 1009 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 ARHGEF11O15085 1522 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 KDM5BQ9UGL1 1544 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 PI4KAP2A4QPH2 592 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 EVI5O60447 810 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 SLC8A1P32418 973 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 PI4KAP1Q8N8J0 262 aa6.83□□□□□ -1.32
SCN1A-203ENST00000409050 TEKT1Q969V4 418 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms