RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 MXD3Q9BW11 206 aa11.51□□□□□ -0.57
VPS53-203ENST00000401468 C9orf78Q9NZ63 289 aaPredicted RBP11.51□□□□□ -0.57
VPS53-203ENST00000401468 PTPREP23469 700 aa11.5□□□□□ -0.57
VPS53-203ENST00000401468 FBXW7Q969H0 707 aa11.5□□□□□ -0.57
VPS53-203ENST00000401468 SUCLG2Q96I99 432 aa11.5□□□□□ -0.57
VPS53-203ENST00000401468 CHMP4BQ9H444 224 aaKnown RBP11.5□□□□□ -0.57
VPS53-203ENST00000401468 RTN4Q9NQC3 1192 aaKnown RBP11.5□□□□□ -0.57
VPS53-203ENST00000401468 CNOT7Q9UIV1 285 aaKnown RBP11.5□□□□□ -0.57
VPS53-203ENST00000401468 HDAC5Q9UQL6 1122 aa11.5□□□□□ -0.57
VPS53-203ENST00000401468 SNAP23O00161 211 aa11.49□□□□□ -0.57
VPS53-203ENST00000401468 UBTFL1P0CB47 393 aaPredicted RBP11.49□□□□□ -0.57
VPS53-203ENST00000401468 KLRK1P26718 216 aa11.49□□□□□ -0.57
VPS53-203ENST00000401468 CTSWP56202 376 aa11.49□□□□□ -0.57
VPS53-203ENST00000401468 CCDC152Q4G0S7 254 aa11.49□□□□□ -0.57
VPS53-203ENST00000401468 EPHA10Q5JZY3 1008 aa11.49□□□□□ -0.57
VPS53-203ENST00000401468 CST9Q5W186 159 aa11.49□□□□□ -0.57
VPS53-203ENST00000401468 CYP4F22Q6NT55 531 aa11.49□□□□□ -0.57
VPS53-203ENST00000401468 ANKRD44Q8N8A2 993 aa11.49□□□□□ -0.57
VPS53-203ENST00000401468 TTLL11Q8NHH1 800 aa11.49□□□□□ -0.57
VPS53-203ENST00000401468 ZDHHC16Q969W1 377 aa11.49□□□□□ -0.57
VPS53-203ENST00000401468 ADARB2Q9NS39 739 aaKnown RBP11.49□□□□□ -0.57
VPS53-203ENST00000401468 TSKSQ9UJT2 592 aa11.49□□□□□ -0.57
VPS53-203ENST00000401468 THSD7BQ9C0I4 1608 aa11.49□□□□□ -0.57
VPS53-203ENST00000401468 ADM5C9JUS6 153 aa11.48□□□□□ -0.57
VPS53-203ENST00000401468 AOC2O75106 756 aa11.48□□□□□ -0.57
VPS53-203ENST00000401468 GNAI2P04899 355 aa11.48□□□□□ -0.57
VPS53-203ENST00000401468 USP48Q86UV5 1035 aa11.48□□□□□ -0.57
VPS53-203ENST00000401468 ANKRD18AQ8IVF6 992 aa11.48□□□□□ -0.57
VPS53-203ENST00000401468 CRBNQ96SW2 442 aa11.48□□□□□ -0.57
VPS53-203ENST00000401468 BICC1Q9H694 974 aaKnown RBP11.48□□□□□ -0.57
VPS53-203ENST00000401468 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.48□□□□□ -0.57
VPS53-203ENST00000401468 GGA1Q9UJY5 639 aa11.48□□□□□ -0.57
VPS53-203ENST00000401468 VPS9D1Q9Y2B5 631 aa11.48□□□□□ -0.57
VPS53-203ENST00000401468 CHMP3Q9Y3E7 222 aa11.48□□□□□ -0.57
VPS53-203ENST00000401468 AK9Q5TCS8 1911 aa11.47□□□□□ -0.57
VPS53-203ENST00000401468 CELF2O95319 508 aaKnown RBP11.47□□□□□ -0.57
VPS53-203ENST00000401468 TNIP1Q15025 636 aa11.47□□□□□ -0.57
VPS53-203ENST00000401468 DEFB115Q30KQ5 88 aa11.47□□□□□ -0.57
VPS53-203ENST00000401468 GRIPAP1Q4V328 841 aa11.47□□□□□ -0.57
VPS53-203ENST00000401468 USP50Q70EL3 339 aaPredicted RBP11.47□□□□□ -0.57
VPS53-203ENST00000401468 TXNRD3Q86VQ6 643 aa11.47□□□□□ -0.57
VPS53-203ENST00000401468 SPRYD3Q8NCJ5 442 aa11.47□□□□□ -0.57
VPS53-203ENST00000401468 HELBQ8NG08 1087 aaPredicted RBP11.47□□□□□ -0.57
VPS53-203ENST00000401468 ZC3H12CQ9C0D7 883 aaKnown RBP11.47□□□□□ -0.57
VPS53-203ENST00000401468 HCSTQ9UBK5 93 aa11.47□□□□□ -0.57
VPS53-203ENST00000401468 LRRFIP2Q9Y608 721 aaKnown RBP11.47□□□□□ -0.57
VPS53-203ENST00000401468 ARAP2Q8WZ64 1704 aa11.46□□□□□ -0.57
VPS53-203ENST00000401468 WDR33Q9C0J8 1336 aaKnown RBP11.46□□□□□ -0.57
VPS53-203ENST00000401468 ZNF594Q96JF6 807 aaPredicted RBP11.46□□□□□ -0.57
VPS53-203ENST00000401468 ADAM33Q9BZ11 813 aa11.46□□□□□ -0.57
VPS53-203ENST00000401468 H7C1D1 291 aa11.45□□□□□ -0.58
VPS53-203ENST00000401468 TAF5LO75529 589 aa11.45□□□□□ -0.58
VPS53-203ENST00000401468 ITGA6P23229 1130 aa11.45□□□□□ -0.58
VPS53-203ENST00000401468 RFX5P48382 616 aaPredicted RBP11.45□□□□□ -0.58
VPS53-203ENST00000401468 CEP85Q6P2H3 762 aa11.45□□□□□ -0.58
VPS53-203ENST00000401468 LMBR1LQ6UX01 489 aa11.45□□□□□ -0.58
VPS53-203ENST00000401468 TMC4Q7Z404 712 aa11.45□□□□□ -0.58
VPS53-203ENST00000401468 RPAP2Q8IXW5 612 aaPredicted RBP11.45□□□□□ -0.58
VPS53-203ENST00000401468 SSH3Q8TE77 659 aa11.45□□□□□ -0.58
VPS53-203ENST00000401468 KCTD12Q96CX2 325 aaKnown RBP11.45□□□□□ -0.58
VPS53-203ENST00000401468 CAPNS2Q96L46 248 aa11.45□□□□□ -0.58
VPS53-203ENST00000401468 ZIC5Q96T25 663 aa11.45□□□□□ -0.58
VPS53-203ENST00000401468 EYA3Q99504 573 aa11.45□□□□□ -0.58
VPS53-203ENST00000401468 MINPP1Q9UNW1 487 aa11.45□□□□□ -0.58
VPS53-203ENST00000401468 JAG2Q9Y219 1238 aa11.45□□□□□ -0.58
VPS53-203ENST00000401468 XDHP47989 1333 aa11.44□□□□□ -0.58
VPS53-203ENST00000401468 CTCFP49711 727 aaPredicted RBP11.44□□□□□ -0.58
VPS53-203ENST00000401468 LBX1P52954 281 aa11.44□□□□□ -0.58
VPS53-203ENST00000401468 ATP8B2P98198 1209 aa11.44□□□□□ -0.58
VPS53-203ENST00000401468 PRAMEF18Q5VWM3 479 aa11.44□□□□□ -0.58
VPS53-203ENST00000401468 SIRT2Q8IXJ6 389 aa11.44□□□□□ -0.58
VPS53-203ENST00000401468 EXOC6Q8TAG9 804 aa11.44□□□□□ -0.58
VPS53-203ENST00000401468 VPS33BQ9H267 617 aa11.44□□□□□ -0.58
VPS53-203ENST00000401468 OTOFQ9HC10 1997 aa11.43□□□□□ -0.58
VPS53-203ENST00000401468 RASSF10A6NK89 507 aa11.43□□□□□ -0.58
VPS53-203ENST00000401468 KIF4BQ2VIQ3 1234 aa11.43□□□□□ -0.58
VPS53-203ENST00000401468 ERICH6BQ5W0A0 696 aa11.43□□□□□ -0.58
VPS53-203ENST00000401468 CDC5LQ99459 802 aaKnown RBP11.43□□□□□ -0.58
VPS53-203ENST00000401468 SLC4A5Q9BY07 1137 aa11.43□□□□□ -0.58
VPS53-203ENST00000401468 GGA3Q9NZ52 723 aa11.43□□□□□ -0.58
VPS53-203ENST00000401468 PODXL2Q9NZ53 605 aa11.43□□□□□ -0.58
VPS53-203ENST00000401468 PNMA6EA0A0J9YXQ4 647 aa11.42□□□□□ -0.58
VPS53-203ENST00000401468 DPYSL4O14531 572 aa11.42□□□□□ -0.58
VPS53-203ENST00000401468 PTPN12Q05209 780 aaKnown RBP11.42□□□□□ -0.58
VPS53-203ENST00000401468 CAMK2BQ13554 666 aa11.42□□□□□ -0.58
VPS53-203ENST00000401468 MOB2Q70IA6 237 aa11.42□□□□□ -0.58
VPS53-203ENST00000401468 KRT26Q7Z3Y9 468 aa11.42□□□□□ -0.58
VPS53-203ENST00000401468 C1orf115Q9H7X2 142 aa11.42□□□□□ -0.58
VPS53-203ENST00000401468 COPRSQ9NQ92 184 aa11.42□□□□□ -0.58
VPS53-203ENST00000401468 PCDHB15Q9Y5E8 787 aa11.42□□□□□ -0.58
VPS53-203ENST00000401468 PCDHGA10Q9Y5H3 936 aa11.42□□□□□ -0.58
VPS53-203ENST00000401468 SRGAP3O43295 1099 aa11.41□□□□□ -0.58
VPS53-203ENST00000401468 SASH1O94885 1247 aa11.41□□□□□ -0.58
VPS53-203ENST00000401468 VIL1P09327 827 aaKnown RBP11.41□□□□□ -0.58
VPS53-203ENST00000401468 ATP2B4P23634 1241 aa11.41□□□□□ -0.58
VPS53-203ENST00000401468 IGHMBP2P38935 993 aaKnown RBP11.41□□□□□ -0.58
VPS53-203ENST00000401468 CHRNDQ07001 517 aa11.41□□□□□ -0.58
VPS53-203ENST00000401468 IFIT5Q13325 482 aaKnown RBP11.41□□□□□ -0.58
VPS53-203ENST00000401468 CCDC57Q2TAC2 916 aa11.41□□□□□ -0.58
VPS53-203ENST00000401468 ANGEL2Q5VTE6 544 aaKnown RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms