RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 TTC14Q96N46 770 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 L2HGDHQ9H9P8 463 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 AOX1Q06278 1338 aa10.54□□□□□ -0.72
COL28A1-201ENST00000399429 MARCH6O60337 910 aa10.54□□□□□ -0.72
COL28A1-201ENST00000399429 ACTN3Q08043 901 aaPredicted RBP10.54□□□□□ -0.72
COL28A1-201ENST00000399429 NAA16Q6N069 864 aaPredicted RBP10.54□□□□□ -0.72
COL28A1-201ENST00000399429 GOPCQ9HD26 462 aa10.54□□□□□ -0.72
COL28A1-201ENST00000399429 INCENPQ9NQS7 918 aa10.54□□□□□ -0.72
COL28A1-201ENST00000399429 MAP3K2Q9Y2U5 619 aa10.54□□□□□ -0.72
COL28A1-201ENST00000399429 KIF1CO43896 1103 aaKnown RBP10.54□□□□□ -0.72
COL28A1-201ENST00000399429 RXRAP19793 462 aa10.54□□□□□ -0.72
COL28A1-201ENST00000399429 IARSP41252 1262 aaKnown RBP10.54□□□□□ -0.72
COL28A1-201ENST00000399429 MCMDC2Q4G0Z9 681 aa10.54□□□□□ -0.72
COL28A1-201ENST00000399429 TTC39AQ5SRH9 613 aa10.54□□□□□ -0.72
COL28A1-201ENST00000399429 FOXR1Q6PIV2 292 aa10.54□□□□□ -0.72
COL28A1-201ENST00000399429 DHX40Q8IX18 779 aaKnown RBP10.54□□□□□ -0.72
COL28A1-201ENST00000399429 CORO7P57737 925 aa10.54□□□□□ -0.72
COL28A1-201ENST00000399429 KIF5AQ12840 1032 aa10.54□□□□□ -0.72
COL28A1-201ENST00000399429 WHAMMP3Q1A5X7 153 aa10.54□□□□□ -0.72
COL28A1-201ENST00000399429 TOGARAM2Q6ZUX3 1019 aa10.54□□□□□ -0.72
COL28A1-201ENST00000399429 SMARCC2Q8TAQ2 1214 aa10.54□□□□□ -0.72
COL28A1-201ENST00000399429 NUDT16Q96DE0 195 aaKnown RBP10.54□□□□□ -0.72
COL28A1-201ENST00000399429 SEC62Q99442 399 aaKnown RBP10.54□□□□□ -0.72
COL28A1-201ENST00000399429 CDC5LQ99459 802 aaKnown RBP10.54□□□□□ -0.72
COL28A1-201ENST00000399429 KCNH3Q9ULD8 1083 aa10.54□□□□□ -0.72
COL28A1-201ENST00000399429 ZBTB12Q9Y330 459 aaPredicted RBP10.54□□□□□ -0.72
COL28A1-201ENST00000399429 KIF24Q5T7B8 1368 aa10.54□□□□□ -0.72
COL28A1-201ENST00000399429 PRDM15P57071 1507 aaPredicted RBP10.54□□□□□ -0.72
COL28A1-201ENST00000399429 A0A0D9SFI3 127 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 SOWAHDA6NJG2 315 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 AKR1B10O60218 316 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 RRAGBQ5VZM2 374 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 ALS2CR12Q96Q35 445 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 TACO1Q9BSH4 297 aaKnown RBP10.53□□□□□ -0.72
COL28A1-201ENST00000399429 RIPOR2Q9Y4F9 1068 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 CCDC61Q9Y6R9 512 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 SYNMO15061 1565 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 CLSTN1O94985 981 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 KRT9P35527 623 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 CYLC1P35663 651 aaPredicted RBP10.53□□□□□ -0.72
COL28A1-201ENST00000399429 TDRD12Q587J7 1177 aaKnown RBP10.53□□□□□ -0.72
COL28A1-201ENST00000399429 NAA15Q9BXJ9 866 aaKnown RBP10.53□□□□□ -0.72
COL28A1-201ENST00000399429 USP44Q9H0E7 712 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 SNRKQ9NRH2 765 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 SPATS2LQ9NUQ6 558 aaKnown RBP10.53□□□□□ -0.72
COL28A1-201ENST00000399429 CHPF2Q9P2E5 772 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 RCOR1Q9UKL0 485 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 MTMR7Q9Y216 660 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 CLIC4Q9Y696 253 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 PIK3R4Q99570 1358 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 BTBD11A6QL63 1104 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 TMEM232C9JQI7 657 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 SASH3O75995 380 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 EPS15P42566 896 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 METAP2P50579 478 aaKnown RBP eCLIP10.53□□□□□ -0.72
COL28A1-201ENST00000399429 UBXN1Q04323 297 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 NCAPH2Q6IBW4 605 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 FCHSD1Q86WN1 690 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 SLC26A6Q9BXS9 759 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 GOLPH3LQ9H4A5 285 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 GNL3LQ9NVN8 582 aaKnown RBP10.53□□□□□ -0.72
COL28A1-201ENST00000399429 CEP131Q9UPN4 1083 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 SAR1BQ9Y6B6 198 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 ERVK-7P63135 1459 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 H3BQF6 201 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 ZNF213O14771 459 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 MYO1BO43795 1136 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 EIF4A2Q14240 407 aaKnown RBP10.53□□□□□ -0.72
COL28A1-201ENST00000399429 BRAPQ7Z569 592 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 FUT8Q9BYC5 575 aa10.53□□□□□ -0.72
COL28A1-201ENST00000399429 TRIM6Q9C030 488 aaPredicted RBP10.53□□□□□ -0.72
COL28A1-201ENST00000399429 LUC7LQ9NQ29 371 aaKnown RBP10.53□□□□□ -0.72
COL28A1-201ENST00000399429 POLR2DO15514 142 aaKnown RBP10.52□□□□□ -0.73
COL28A1-201ENST00000399429 IL13P35225 146 aa10.52□□□□□ -0.73
COL28A1-201ENST00000399429 SNCBQ16143 134 aa10.52□□□□□ -0.73
COL28A1-201ENST00000399429 IL25Q9H293 177 aa10.52□□□□□ -0.73
COL28A1-201ENST00000399429 LUC7L2Q9Y383 392 aaKnown RBP10.52□□□□□ -0.73
COL28A1-201ENST00000399429 CD109Q6YHK3 1445 aa10.52□□□□□ -0.73
COL28A1-201ENST00000399429 IFIT1P09914 478 aaKnown RBP10.52□□□□□ -0.73
COL28A1-201ENST00000399429 NOP2P46087 812 aaKnown RBP10.52□□□□□ -0.73
COL28A1-201ENST00000399429 RNASE9P60153 205 aaKnown RBP10.52□□□□□ -0.73
COL28A1-201ENST00000399429 RESTQ13127 1097 aa10.52□□□□□ -0.73
COL28A1-201ENST00000399429 ARFGAP2Q8N6H7 521 aa10.52□□□□□ -0.73
COL28A1-201ENST00000399429 USHBP1Q8N6Y0 703 aa10.52□□□□□ -0.73
COL28A1-201ENST00000399429 RIN2Q8WYP3 895 aaPredicted RBP10.52□□□□□ -0.73
COL28A1-201ENST00000399429 LLPHQ9BRT6 129 aaKnown RBP10.52□□□□□ -0.73
COL28A1-201ENST00000399429 CHUKO15111 745 aa10.52□□□□□ -0.73
COL28A1-201ENST00000399429 CUTAO60888 179 aa10.52□□□□□ -0.73
COL28A1-201ENST00000399429 TACC1O75410 805 aa10.52□□□□□ -0.73
COL28A1-201ENST00000399429 CSB-PGBD3P0DP91 1061 aa10.52□□□□□ -0.73
COL28A1-201ENST00000399429 KRT83P78385 493 aa10.52□□□□□ -0.73
COL28A1-201ENST00000399429 SCRN1Q12765 414 aa10.52□□□□□ -0.73
COL28A1-201ENST00000399429 MTHFSDQ2M296 383 aaKnown RBP10.52□□□□□ -0.73
COL28A1-201ENST00000399429 KANK3Q6NY19 840 aa10.52□□□□□ -0.73
COL28A1-201ENST00000399429 GPIHBP1Q8IV16 184 aa10.52□□□□□ -0.73
COL28A1-201ENST00000399429 TTC5Q8N0Z6 440 aa10.52□□□□□ -0.73
COL28A1-201ENST00000399429 AIDAQ96BJ3 306 aa10.52□□□□□ -0.73
COL28A1-201ENST00000399429 PSD3Q9NYI0 1048 aa10.52□□□□□ -0.73
COL28A1-201ENST00000399429 MRFAP1Q9Y605 127 aa10.52□□□□□ -0.73
COL28A1-201ENST00000399429 PARP3Q9Y6F1 533 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms