RNA–Protein interactions for RNA: ENST00000399275.6

SMAD9-203, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMAD9, Length 5,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-203ENST00000399275 CHCHD3Q9NX63 227 aaKnown RBP10.8□□□□□ -0.68
SMAD9-203ENST00000399275 UBAP1Q9NZ09 502 aa10.8□□□□□ -0.68
SMAD9-203ENST00000399275 KIF5AQ12840 1032 aa10.8□□□□□ -0.68
SMAD9-203ENST00000399275 TUBB2AQ13885 445 aa10.8□□□□□ -0.68
SMAD9-203ENST00000399275 VSIG1Q86XK7 387 aa10.8□□□□□ -0.68
SMAD9-203ENST00000399275 TUBB2BQ9BVA1 445 aa10.8□□□□□ -0.68
SMAD9-203ENST00000399275 DMRT2Q9Y5R5 561 aa10.8□□□□□ -0.68
SMAD9-203ENST00000399275 KDM6BO15054 1643 aa10.79□□□□□ -0.68
SMAD9-203ENST00000399275 HPDP32754 393 aaPredicted RBP10.79□□□□□ -0.68
SMAD9-203ENST00000399275 PSME1Q06323 249 aa10.79□□□□□ -0.68
SMAD9-203ENST00000399275 CCDC57Q2TAC2 916 aa10.79□□□□□ -0.68
SMAD9-203ENST00000399275 C8orf58Q8NAV2 365 aa10.79□□□□□ -0.68
SMAD9-203ENST00000399275 CTAGE1Q96RT6 745 aa10.79□□□□□ -0.68
SMAD9-203ENST00000399275 RBM8AQ9Y5S9 174 aaKnown RBP10.79□□□□□ -0.68
SMAD9-203ENST00000399275 BTBD11A6QL63 1104 aa10.79□□□□□ -0.68
SMAD9-203ENST00000399275 MAGEA9P43362 315 aa10.79□□□□□ -0.68
SMAD9-203ENST00000399275 KIAA0753Q2KHM9 967 aa10.79□□□□□ -0.68
SMAD9-203ENST00000399275 FKBP15Q5T1M5 1219 aa10.79□□□□□ -0.68
SMAD9-203ENST00000399275 ANKRD24Q8TF21 1146 aa10.79□□□□□ -0.68
SMAD9-203ENST00000399275 TSC1Q92574 1164 aa10.79□□□□□ -0.68
SMAD9-203ENST00000399275 YIPF3Q9GZM5 350 aa10.79□□□□□ -0.68
SMAD9-203ENST00000399275 ADGBQ8N7X0 1667 aa10.79□□□□□ -0.68
SMAD9-203ENST00000399275 ATP2A2P16615 1042 aaKnown RBP10.79□□□□□ -0.68
SMAD9-203ENST00000399275 NUDT16Q96DE0 195 aaKnown RBP10.79□□□□□ -0.68
SMAD9-203ENST00000399275 SPDL1Q96EA4 605 aa10.79□□□□□ -0.68
SMAD9-203ENST00000399275 UTP6Q9NYH9 597 aaKnown RBP10.79□□□□□ -0.68
SMAD9-203ENST00000399275 FAN1Q9Y2M0 1017 aa10.79□□□□□ -0.68
SMAD9-203ENST00000399275 SSH2Q76I76 1423 aa10.78□□□□□ -0.68
SMAD9-203ENST00000399275 HNRNPH2P55795 449 aaKnown RBP10.78□□□□□ -0.68
SMAD9-203ENST00000399275 GUCY1B3Q02153 619 aa10.78□□□□□ -0.68
SMAD9-203ENST00000399275 VPS36Q86VN1 386 aa10.78□□□□□ -0.68
SMAD9-203ENST00000399275 CBX8Q9HC52 389 aa10.78□□□□□ -0.68
SMAD9-203ENST00000399275 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.78□□□□□ -0.68
SMAD9-203ENST00000399275 RTL1A6NKG5 1358 aa10.78□□□□□ -0.68
SMAD9-203ENST00000399275 GADD45BO75293 160 aaPredicted RBP10.78□□□□□ -0.68
SMAD9-203ENST00000399275 SMARCC2Q8TAQ2 1214 aa10.78□□□□□ -0.68
SMAD9-203ENST00000399275 SCOCQ9UIL1 159 aa10.78□□□□□ -0.68
SMAD9-203ENST00000399275 STK38LQ9Y2H1 464 aa10.78□□□□□ -0.68
SMAD9-203ENST00000399275 DTNBP1Q96EV8 351 aa10.78□□□□□ -0.68
SMAD9-203ENST00000399275 USP19O94966 1318 aa10.78□□□□□ -0.68
SMAD9-203ENST00000399275 RAD50Q92878 1312 aa10.78□□□□□ -0.68
SMAD9-203ENST00000399275 SYKP43405 635 aa10.78□□□□□ -0.68
SMAD9-203ENST00000399275 TXNDC2Q86VQ3 553 aa10.78□□□□□ -0.68
SMAD9-203ENST00000399275 SERPINI2O75830 405 aa10.77□□□□□ -0.68
SMAD9-203ENST00000399275 PHEXP78562 749 aa10.77□□□□□ -0.68
SMAD9-203ENST00000399275 SMC1BQ8NDV3 1235 aa10.77□□□□□ -0.68
SMAD9-203ENST00000399275 PYM1Q9BRP8 204 aaKnown RBP10.77□□□□□ -0.68
SMAD9-203ENST00000399275 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.77□□□□□ -0.68
SMAD9-203ENST00000399275 ZNF530Q6P9A1 599 aaPredicted RBP10.77□□□□□ -0.69
SMAD9-203ENST00000399275 PPP1R21Q6ZMI0 780 aa10.77□□□□□ -0.69
SMAD9-203ENST00000399275 ZNF280CQ8ND82 737 aa10.77□□□□□ -0.69
SMAD9-203ENST00000399275 IWS1Q96ST2 819 aa10.77□□□□□ -0.69
SMAD9-203ENST00000399275 KRT18P05783 430 aaKnown RBP10.77□□□□□ -0.69
SMAD9-203ENST00000399275 PPFIA1Q13136 1202 aa10.77□□□□□ -0.69
SMAD9-203ENST00000399275 TLDC2A0PJX2 215 aa10.77□□□□□ -0.69
SMAD9-203ENST00000399275 ATP10BO94823 1461 aa10.77□□□□□ -0.69
SMAD9-203ENST00000399275 ACTN2P35609 894 aa10.77□□□□□ -0.69
SMAD9-203ENST00000399275 CCT2P78371 535 aaKnown RBP10.77□□□□□ -0.69
SMAD9-203ENST00000399275 ERBB4Q15303 1308 aa10.77□□□□□ -0.69
SMAD9-203ENST00000399275 NME9Q86XW9 330 aa10.77□□□□□ -0.69
SMAD9-203ENST00000399275 WDR75Q8IWA0 830 aaKnown RBP10.77□□□□□ -0.69
SMAD9-203ENST00000399275 ABTB2Q8N961 1025 aa10.77□□□□□ -0.69
SMAD9-203ENST00000399275 ZNF711Q9Y462 761 aa10.77□□□□□ -0.69
SMAD9-203ENST00000399275 CLTAP09496 248 aa10.76□□□□□ -0.69
SMAD9-203ENST00000399275 TDRD12Q587J7 1177 aaKnown RBP10.76□□□□□ -0.69
SMAD9-203ENST00000399275 IQCA1Q86XH1 822 aa10.76□□□□□ -0.69
SMAD9-203ENST00000399275 VPS37DQ86XT2 251 aa10.76□□□□□ -0.69
SMAD9-203ENST00000399275 RAB3IPQ96QF0 476 aaPredicted RBP10.76□□□□□ -0.69
SMAD9-203ENST00000399275 CCDC8Q9H0W5 538 aaPredicted RBP10.76□□□□□ -0.69
SMAD9-203ENST00000399275 ELP1O95163 1332 aa10.76□□□□□ -0.69
SMAD9-203ENST00000399275 PRPF4BQ13523 1007 aaKnown RBP10.76□□□□□ -0.69
SMAD9-203ENST00000399275 BCAS4Q8TDM0 211 aa10.76□□□□□ -0.69
SMAD9-203ENST00000399275 CNKSR2Q8WXI2 1034 aa10.76□□□□□ -0.69
SMAD9-203ENST00000399275 IFNKQ9P0W0 207 aa10.76□□□□□ -0.69
SMAD9-203ENST00000399275 FAM83GA6ND36 823 aa10.76□□□□□ -0.69
SMAD9-203ENST00000399275 GOLGA8BA8MQT2 603 aa10.76□□□□□ -0.69
SMAD9-203ENST00000399275 E7EVH7 732 aa10.76□□□□□ -0.69
SMAD9-203ENST00000399275 PPFIA4O75335 1185 aa10.76□□□□□ -0.69
SMAD9-203ENST00000399275 TRAF1Q13077 416 aa10.76□□□□□ -0.69
SMAD9-203ENST00000399275 SF3B2Q13435 895 aaKnown RBP10.76□□□□□ -0.69
SMAD9-203ENST00000399275 NBPF10Q6P3W6 841 aaKnown RBP10.76□□□□□ -0.69
SMAD9-203ENST00000399275 ZCRB1Q8TBF4 217 aaKnown RBP10.76□□□□□ -0.69
SMAD9-203ENST00000399275 KCNK9Q9NPC2 374 aa10.76□□□□□ -0.69
SMAD9-203ENST00000399275 TSC22D4Q9Y3Q8 395 aa10.76□□□□□ -0.69
SMAD9-203ENST00000399275 FKBP4Q02790 459 aaKnown RBP eCLIP10.76□□□□□ -0.69
SMAD9-203ENST00000399275 ERCC6LQ2NKX8 1250 aa10.76□□□□□ -0.69
SMAD9-203ENST00000399275 BRF1Q92994 677 aa10.76□□□□□ -0.69
SMAD9-203ENST00000399275 BICD1Q96G01 975 aa10.76□□□□□ -0.69
SMAD9-203ENST00000399275 PFDN4Q9NQP4 134 aa10.76□□□□□ -0.69
SMAD9-203ENST00000399275 CEP126Q9P2H0 1117 aa10.76□□□□□ -0.69
SMAD9-203ENST00000399275 DISP1Q96F81 1524 aa10.76□□□□□ -0.69
SMAD9-203ENST00000399275 TRAPPC8Q9Y2L5 1435 aa10.75□□□□□ -0.69
SMAD9-203ENST00000399275 RASSF2P50749 326 aa10.75□□□□□ -0.69
SMAD9-203ENST00000399275 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.75□□□□□ -0.69
SMAD9-203ENST00000399275 TSPYL6Q8N831 410 aa10.75□□□□□ -0.69
SMAD9-203ENST00000399275 SYTL4Q96C24 671 aaPredicted RBP10.75□□□□□ -0.69
SMAD9-203ENST00000399275 EIF2AQ9BY44 585 aaKnown RBP10.75□□□□□ -0.69
SMAD9-203ENST00000399275 GOLGA6BA6NDN3 693 aa10.75□□□□□ -0.69
SMAD9-203ENST00000399275 CHUKO15111 745 aa10.75□□□□□ -0.69
SMAD9-203ENST00000399275 NUDCD3Q8IVD9 361 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms