RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 SPDYE2Q495Y8 402 aa12.98□□□□□ -0.33
NEDD8-202ENST00000396828 IFNL1Q8IU54 200 aa12.98□□□□□ -0.33
NEDD8-202ENST00000396828 DZIP1LQ8IYY4 767 aaKnown RBP12.98□□□□□ -0.33
NEDD8-202ENST00000396828 VGLL2Q8N8G2 317 aa12.98□□□□□ -0.33
NEDD8-202ENST00000396828 TEPSINQ96N21 525 aa12.98□□□□□ -0.33
NEDD8-202ENST00000396828 PTPN18Q99952 460 aa12.98□□□□□ -0.33
NEDD8-202ENST00000396828 CFHR5Q9BXR6 569 aa12.98□□□□□ -0.33
NEDD8-202ENST00000396828 PPP2R3BQ9Y5P8 575 aa12.98□□□□□ -0.33
NEDD8-202ENST00000396828 LAMB1P07942 1786 aa12.98□□□□□ -0.33
NEDD8-202ENST00000396828 ARAP2Q8WZ64 1704 aa12.98□□□□□ -0.33
NEDD8-202ENST00000396828 PPP1R12BO60237 982 aaPredicted RBP12.97□□□□□ -0.33
NEDD8-202ENST00000396828 FKTNO75072 461 aa12.97□□□□□ -0.33
NEDD8-202ENST00000396828 CT47B1P0C2W7 299 aaPredicted RBP12.97□□□□□ -0.33
NEDD8-202ENST00000396828 SUPT20HL1Q3ZLR7 823 aa12.97□□□□□ -0.33
NEDD8-202ENST00000396828 NOM1Q5C9Z4 860 aaKnown RBP12.97□□□□□ -0.33
NEDD8-202ENST00000396828 TMEM39BQ9GZU3 492 aa12.97□□□□□ -0.33
NEDD8-202ENST00000396828 USP44Q9H0E7 712 aa12.97□□□□□ -0.33
NEDD8-202ENST00000396828 SERPINA10Q9UK55 444 aa12.97□□□□□ -0.33
NEDD8-202ENST00000396828 MROH5Q6ZUA9 1318 aa12.96□□□□□ -0.33
NEDD8-202ENST00000396828 MANSC4A6NHS7 340 aaPredicted RBP12.96□□□□□ -0.33
NEDD8-202ENST00000396828 TCP10L2B9ZVM9 353 aa12.96□□□□□ -0.33
NEDD8-202ENST00000396828 SLC34A2O95436 690 aa12.96□□□□□ -0.33
NEDD8-202ENST00000396828 ZBTB48P10074 688 aaPredicted RBP12.96□□□□□ -0.33
NEDD8-202ENST00000396828 CRKP46108 304 aa12.96□□□□□ -0.33
NEDD8-202ENST00000396828 BCAMP50895 628 aa12.96□□□□□ -0.33
NEDD8-202ENST00000396828 CACNB3P54284 484 aa12.96□□□□□ -0.33
NEDD8-202ENST00000396828 CHAF1AQ13111 956 aaPredicted RBP12.96□□□□□ -0.33
NEDD8-202ENST00000396828 ELP3Q9H9T3 547 aa12.96□□□□□ -0.33
NEDD8-202ENST00000396828 RCAN3Q9UKA8 241 aa12.96□□□□□ -0.33
NEDD8-202ENST00000396828 PDE8BO95263 885 aa12.95□□□□□ -0.34
NEDD8-202ENST00000396828 PKN2Q16513 984 aaKnown RBP12.95□□□□□ -0.34
NEDD8-202ENST00000396828 METTL24Q5JXM2 366 aa12.95□□□□□ -0.34
NEDD8-202ENST00000396828 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.95□□□□□ -0.34
NEDD8-202ENST00000396828 PTPRCP08575 1304 aa12.94□□□□□ -0.34
NEDD8-202ENST00000396828 IREB2P48200 963 aaKnown RBP12.94□□□□□ -0.34
NEDD8-202ENST00000396828 RFX5P48382 616 aaPredicted RBP12.94□□□□□ -0.34
NEDD8-202ENST00000396828 INHBEP58166 350 aa12.94□□□□□ -0.34
NEDD8-202ENST00000396828 CRHR2Q13324 411 aa12.94□□□□□ -0.34
NEDD8-202ENST00000396828 FBXO46Q6PJ61 603 aaPredicted RBP12.94□□□□□ -0.34
NEDD8-202ENST00000396828 ANKRD13AQ8IZ07 590 aa12.94□□□□□ -0.34
NEDD8-202ENST00000396828 OPTNQ96CV9 577 aa12.94□□□□□ -0.34
NEDD8-202ENST00000396828 MS4A4AQ96JQ5 239 aa12.94□□□□□ -0.34
NEDD8-202ENST00000396828 TESPA1A2RU30 521 aaPredicted RBP12.93□□□□□ -0.34
NEDD8-202ENST00000396828 ALDH1A1P00352 501 aa12.93□□□□□ -0.34
NEDD8-202ENST00000396828 FGFR2P21802 821 aa12.93□□□□□ -0.34
NEDD8-202ENST00000396828 OTOP1Q7RTM1 612 aa12.93□□□□□ -0.34
NEDD8-202ENST00000396828 VPS37DQ86XT2 251 aa12.93□□□□□ -0.34
NEDD8-202ENST00000396828 TRIM17Q9Y577 477 aa12.93□□□□□ -0.34
NEDD8-202ENST00000396828 UNCXA6NJT0 531 aa12.92□□□□□ -0.34
NEDD8-202ENST00000396828 VGLL4Q14135 290 aa12.92□□□□□ -0.34
NEDD8-202ENST00000396828 APOBEC3HQ6NTF7 200 aaKnown RBP12.92□□□□□ -0.34
NEDD8-202ENST00000396828 ATG9AQ7Z3C6 839 aa12.92□□□□□ -0.34
NEDD8-202ENST00000396828 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.92□□□□□ -0.344e-11■■□□□ 12.8
NEDD8-202ENST00000396828 CD99L2Q8TCZ2 262 aa12.92□□□□□ -0.34
NEDD8-202ENST00000396828 SUPT16HQ9Y5B9 1047 aaKnown RBP12.92□□□□□ -0.34
NEDD8-202ENST00000396828 FRAT2O75474 233 aaPredicted RBP12.91□□□□□ -0.34
NEDD8-202ENST00000396828 TNFAIP1Q13829 316 aa12.91□□□□□ -0.34
NEDD8-202ENST00000396828 CAVIN4Q5BKX8 364 aa12.91□□□□□ -0.34
NEDD8-202ENST00000396828 BRI3BPQ8WY22 251 aa12.91□□□□□ -0.34
NEDD8-202ENST00000396828 POTEFA5A3E0 1075 aa12.9□□□□□ -0.34
NEDD8-202ENST00000396828 EYA2O00167 538 aa12.9□□□□□ -0.34
NEDD8-202ENST00000396828 NEFLP07196 543 aa12.9□□□□□ -0.34
NEDD8-202ENST00000396828 MAP3K9P80192 1104 aa12.9□□□□□ -0.34
NEDD8-202ENST00000396828 HDLBPQ00341 1268 aaKnown RBP12.9□□□□□ -0.34
NEDD8-202ENST00000396828 PUM3Q15397 648 aaKnown RBP12.9□□□□□ -0.34
NEDD8-202ENST00000396828 FAM43AQ8N2R8 423 aa12.9□□□□□ -0.34
NEDD8-202ENST00000396828 TBC1D22AQ8WUA7 517 aa12.9□□□□□ -0.34
NEDD8-202ENST00000396828 TEKT1Q969V4 418 aa12.9□□□□□ -0.34
NEDD8-202ENST00000396828 ZDHHC15Q96MV8 337 aa12.9□□□□□ -0.34
NEDD8-202ENST00000396828 TNNI2P48788 182 aa12.89□□□□□ -0.35
NEDD8-202ENST00000396828 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.89□□□□□ -0.35
NEDD8-202ENST00000396828 ZKSCAN4Q969J2 545 aaPredicted RBP12.89□□□□□ -0.35
NEDD8-202ENST00000396828 OTUD5Q96G74 571 aa12.89□□□□□ -0.35
NEDD8-202ENST00000396828 SIL1Q9H173 461 aa12.89□□□□□ -0.35
NEDD8-202ENST00000396828 PTPN22Q9Y2R2 807 aa12.89□□□□□ -0.35
NEDD8-202ENST00000396828 SNCAIPQ9Y6H5 919 aa12.89□□□□□ -0.35
NEDD8-202ENST00000396828 ZSWIM8A7E2V4 1837 aa12.89□□□□□ -0.35
NEDD8-202ENST00000396828 MYH13Q9UKX3 1938 aa12.89□□□□□ -0.35
NEDD8-202ENST00000396828 CCL15-CCL14A0A0B4J2E2 113 aa12.88□□□□□ -0.35
NEDD8-202ENST00000396828 IFIT1P09914 478 aaKnown RBP12.88□□□□□ -0.35
NEDD8-202ENST00000396828 RARSP54136 660 aaKnown RBP12.88□□□□□ -0.35
NEDD8-202ENST00000396828 SP3Q02447 781 aa12.88□□□□□ -0.35
NEDD8-202ENST00000396828 DIXDC1Q155Q3 683 aa12.88□□□□□ -0.35
NEDD8-202ENST00000396828 CCL15Q16663 113 aa12.88□□□□□ -0.35
NEDD8-202ENST00000396828 ALDH1L2Q3SY69 923 aa12.88□□□□□ -0.35
NEDD8-202ENST00000396828 MIGA2Q7L4E1 593 aa12.88□□□□□ -0.35
NEDD8-202ENST00000396828 SMC4Q9NTJ3 1288 aa12.88□□□□□ -0.35
NEDD8-202ENST00000396828 RNF216Q9NWF9 866 aaPredicted RBP12.88□□□□□ -0.35
NEDD8-202ENST00000396828 NOB1Q9ULX3 412 aaKnown RBP12.88□□□□□ -0.35
NEDD8-202ENST00000396828 PA2G4Q9UQ80 394 aaKnown RBP12.88□□□□□ -0.35
NEDD8-202ENST00000396828 KIF16BQ96L93 1317 aa12.88□□□□□ -0.35
NEDD8-202ENST00000396828 NFIAQ12857 509 aa12.87□□□□□ -0.35
NEDD8-202ENST00000396828 OTUD7BQ6GQQ9 843 aa12.87□□□□□ -0.35
NEDD8-202ENST00000396828 HHIPL2Q6UWX4 724 aa12.87□□□□□ -0.35
NEDD8-202ENST00000396828 FAM83AQ86UY5 434 aa12.87□□□□□ -0.35
NEDD8-202ENST00000396828 LPIN2Q92539 896 aa12.87□□□□□ -0.35
NEDD8-202ENST00000396828 WRNIP1Q96S55 665 aa12.87□□□□□ -0.35
NEDD8-202ENST00000396828 MRIQ9BWK5 157 aa12.87□□□□□ -0.35
NEDD8-202ENST00000396828 SPDYE5A6NIY4 337 aa12.86□□□□□ -0.35
NEDD8-202ENST00000396828 IRF6O14896 467 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms