RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 HMG20BQ9P0W2 317 aa26.65■■□□□ 1.86
CLN3-207ENST00000395653 TMEM88BA6NKF7 163 aa26.65■■□□□ 1.86
CLN3-207ENST00000395653 CRKP46108 304 aa26.65■■□□□ 1.86
CLN3-207ENST00000395653 FMR1Q06787 632 aaKnown RBP eCLIP26.65■■□□□ 1.86
CLN3-207ENST00000395653 SPATA5Q8NB90 893 aa26.65■■□□□ 1.86
CLN3-207ENST00000395653 PRMT6Q96LA8 375 aaPredicted RBP26.65■■□□□ 1.86
CLN3-207ENST00000395653 DCTPP1Q9H773 170 aa26.65■■□□□ 1.86
CLN3-207ENST00000395653 PCDHAC2Q9Y5I4 1007 aa26.65■■□□□ 1.86
CLN3-207ENST00000395653 ADM5C9JUS6 153 aa26.64■■□□□ 1.85
CLN3-207ENST00000395653 MYO1BO43795 1136 aa26.64■■□□□ 1.85
CLN3-207ENST00000395653 LDHBP07195 334 aaKnown RBP26.64■■□□□ 1.85
CLN3-207ENST00000395653 PRDX5P30044 214 aa26.64■■□□□ 1.85
CLN3-207ENST00000395653 MCAMP43121 646 aa26.64■■□□□ 1.85
CLN3-207ENST00000395653 TEKT1Q969V4 418 aa26.64■■□□□ 1.85
CLN3-207ENST00000395653 ECM29Q5VYK3 1845 aa26.64■■□□□ 1.85
CLN3-207ENST00000395653 POLR2AP24928 1970 aaKnown RBP26.63■■□□□ 1.85
CLN3-207ENST00000395653 APOBEC3FQ8IUX4 373 aaKnown RBP26.63■■□□□ 1.85
CLN3-207ENST00000395653 TRPM7Q96QT4 1865 aa26.62■■□□□ 1.85
CLN3-207ENST00000395653 HTRA3P83110 453 aa26.62■■□□□ 1.85
CLN3-207ENST00000395653 HHIPL2Q6UWX4 724 aa26.62■■□□□ 1.85
CLN3-207ENST00000395653 LRRCC1Q9C099 1032 aa26.62■■□□□ 1.85
CLN3-207ENST00000395653 SPTY2D1Q68D10 685 aaPredicted RBP26.61■■□□□ 1.85
CLN3-207ENST00000395653 PI16Q6UXB8 463 aa26.61■■□□□ 1.85
CLN3-207ENST00000395653 ZDHHC15Q96MV8 337 aa26.61■■□□□ 1.85
CLN3-207ENST00000395653 ABCF2Q9UG63 623 aa26.61■■□□□ 1.85
CLN3-207ENST00000395653 CEP350Q5VT06 3117 aa26.61■■□□□ 1.85
CLN3-207ENST00000395653 CST9Q5W186 159 aa26.6■■□□□ 1.85
CLN3-207ENST00000395653 CELF2O95319 508 aaKnown RBP26.59■■□□□ 1.85
CLN3-207ENST00000395653 DLK2Q6UY11 383 aa26.59■■□□□ 1.85
CLN3-207ENST00000395653 EXOC6Q8TAG9 804 aa26.59■■□□□ 1.85
CLN3-207ENST00000395653 AOX1Q06278 1338 aa26.59■■□□□ 1.85
CLN3-207ENST00000395653 IFIT2P09913 472 aaKnown RBP26.58■■□□□ 1.85
CLN3-207ENST00000395653 SPDYE2Q495Y8 402 aa26.58■■□□□ 1.85
CLN3-207ENST00000395653 CDCA5Q96FF9 252 aa26.58■■□□□ 1.85
CLN3-207ENST00000395653 CLRN2A0PK11 232 aa26.57■■□□□ 1.84
CLN3-207ENST00000395653 ERICH6Q7L0X2 663 aa26.57■■□□□ 1.84
CLN3-207ENST00000395653 ZNF408Q9H9D4 720 aa26.57■■□□□ 1.84
CLN3-207ENST00000395653 AKAP11Q9UKA4 1901 aa26.57■■□□□ 1.84
CLN3-207ENST00000395653 HDAC1Q13547 482 aaPredicted RBP26.56■■□□□ 1.84
CLN3-207ENST00000395653 DIXDC1Q155Q3 683 aa26.56■■□□□ 1.84
CLN3-207ENST00000395653 APOBEC3HQ6NTF7 200 aaKnown RBP26.56■■□□□ 1.84
CLN3-207ENST00000395653 DZIP1Q86YF9 867 aaKnown RBP26.56■■□□□ 1.84
CLN3-207ENST00000395653 TDRD3Q9H7E2 651 aaKnown RBP26.56■■□□□ 1.84
CLN3-207ENST00000395653 ZNF70Q9UC06 446 aaPredicted RBP26.56■■□□□ 1.84
CLN3-207ENST00000395653 SCAF8Q9UPN6 1271 aaKnown RBP26.56■■□□□ 1.84
CLN3-207ENST00000395653 VEZTQ9HBM0 779 aa26.56■■□□□ 1.84
CLN3-207ENST00000395653 SNRKQ9NRH2 765 aa26.56■■□□□ 1.84
CLN3-207ENST00000395653 DAGLAQ9Y4D2 1042 aa26.56■■□□□ 1.84
CLN3-207ENST00000395653 PPP2R3BQ9Y5P8 575 aa26.56■■□□□ 1.84
CLN3-207ENST00000395653 TBC1D9Q6ZT07 1266 aa26.55■■□□□ 1.84
CLN3-207ENST00000395653 SLF2Q8IX21 1173 aa26.55■■□□□ 1.84
CLN3-207ENST00000395653 DNAJC5GQ8N7S2 189 aa26.55■■□□□ 1.84
CLN3-207ENST00000395653 DEFB129Q9H1M3 183 aa26.55■■□□□ 1.84
CLN3-207ENST00000395653 IGSF3O75054 1194 aa26.54■■□□□ 1.84
CLN3-207ENST00000395653 TNFAIP1Q13829 316 aa26.54■■□□□ 1.84
CLN3-207ENST00000395653 PPIL4Q8WUA2 492 aaKnown RBP eCLIP26.54■■□□□ 1.84
CLN3-207ENST00000395653 ABT1Q9ULW3 272 aaKnown RBP26.54■■□□□ 1.84
CLN3-207ENST00000395653 GAKO14976 1311 aa26.54■■□□□ 1.84
CLN3-207ENST00000395653 SMARCA5O60264 1052 aaPredicted RBP26.53■■□□□ 1.84
CLN3-207ENST00000395653 CYP2E1P05181 493 aaPredicted RBP26.53■■□□□ 1.84
CLN3-207ENST00000395653 ZAP70P43403 619 aa26.53■■□□□ 1.84
CLN3-207ENST00000395653 FAM163AQ96GL9 167 aaPredicted RBP26.53■■□□□ 1.84
CLN3-207ENST00000395653 BCL11AQ9H165 835 aa26.53■■□□□ 1.84
CLN3-207ENST00000395653 LRP2BPQ9P2M1 347 aa26.53■■□□□ 1.84
CLN3-207ENST00000395653 TLL2Q9Y6L7 1015 aa26.53■■□□□ 1.84
CLN3-207ENST00000395653 RASSF10A6NK89 507 aa26.52■■□□□ 1.84
CLN3-207ENST00000395653 MECOMQ03112 1051 aa26.52■■□□□ 1.84
CLN3-207ENST00000395653 KLRG1Q96E93 195 aa26.52■■□□□ 1.84
CLN3-207ENST00000395653 GBA2Q9HCG7 927 aaPredicted RBP26.52■■□□□ 1.84
CLN3-207ENST00000395653 SAPCD2Q86UD0 394 aa26.51■■□□□ 1.83
CLN3-207ENST00000395653 NSUN4Q96CB9 384 aaKnown RBP26.51■■□□□ 1.83
CLN3-207ENST00000395653 TMOD2Q9NZR1 351 aa26.51■■□□□ 1.83
CLN3-207ENST00000395653 RAI14Q9P0K7 980 aa26.51■■□□□ 1.83
CLN3-207ENST00000395653 CNTNAP1P78357 1384 aa26.51■■□□□ 1.83
CLN3-207ENST00000395653 GSTO1P78417 241 aa26.5■■□□□ 1.83
CLN3-207ENST00000395653 FKBP1CQ5VVH2 108 aa26.5■■□□□ 1.83
CLN3-207ENST00000395653 PRAMEF18Q5VWM3 479 aa26.5■■□□□ 1.83
CLN3-207ENST00000395653 C2orf69Q8N8R5 385 aa26.5■■□□□ 1.83
CLN3-207ENST00000395653 ZNF384Q8TF68 577 aa26.5■■□□□ 1.83
CLN3-207ENST00000395653 GCC1Q96CN9 775 aa26.5■■□□□ 1.83
CLN3-207ENST00000395653 MROH7-TTC4A0A0A0MT08 1334 aa26.5■■□□□ 1.83
CLN3-207ENST00000395653 MAST2Q6P0Q8 1798 aa26.5■■□□□ 1.83
CLN3-207ENST00000395653 MYH2Q9UKX2 1941 aa26.5■■□□□ 1.83
CLN3-207ENST00000395653 NF2P35240 595 aa26.49■■□□□ 1.83
CLN3-207ENST00000395653 TNNI2P48788 182 aa26.49■■□□□ 1.83
CLN3-207ENST00000395653 FKBP1BP68106 108 aa26.49■■□□□ 1.83
CLN3-207ENST00000395653 RASA3Q14644 834 aa26.49■■□□□ 1.83
CLN3-207ENST00000395653 LDHCP07864 332 aa26.48■■□□□ 1.83
CLN3-207ENST00000395653 MKRN1Q9UHC7 482 aaKnown RBP26.48■■□□□ 1.83
CLN3-207ENST00000395653 ATP5JP18859 108 aa26.48■■□□□ 1.83
CLN3-207ENST00000395653 IRX6P78412 446 aaPredicted RBP26.48■■□□□ 1.83
CLN3-207ENST00000395653 DEFB115Q30KQ5 88 aa26.48■■□□□ 1.83
CLN3-207ENST00000395653 CDC42EP5Q6NZY7 148 aa26.48■■□□□ 1.83
CLN3-207ENST00000395653 HHIPL1Q96JK4 782 aa26.48■■□□□ 1.83
CLN3-207ENST00000395653 RWDD1Q9H446 243 aaPredicted RBP26.48■■□□□ 1.83
CLN3-207ENST00000395653 PIH1D3Q9NQM4 214 aaKnown RBP26.48■■□□□ 1.83
CLN3-207ENST00000395653 PAPPA2Q9BXP8 1791 aa26.47■■□□□ 1.83
CLN3-207ENST00000395653 TCP10L2B9ZVM9 353 aa26.47■■□□□ 1.83
CLN3-207ENST00000395653 FAM83AQ86UY5 434 aa26.47■■□□□ 1.83
CLN3-207ENST00000395653 NDUFB9Q9Y6M9 179 aa26.47■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms