RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 IFFO2Q5TF58 517 aa20.54■□□□□ 0.88
SQSTM1-202ENST00000389805 GIGYF2Q6Y7W6 1299 aaKnown RBP20.54■□□□□ 0.88
SQSTM1-202ENST00000389805 ZBTB1Q9Y2K1 713 aa20.54■□□□□ 0.88
SQSTM1-202ENST00000389805 STRCQ7RTU9 1775 aa20.53■□□□□ 0.88
SQSTM1-202ENST00000389805 A0A0G2JS52 829 aa20.53■□□□□ 0.88
SQSTM1-202ENST00000389805 FOXP2O15409 715 aa20.53■□□□□ 0.88
SQSTM1-202ENST00000389805 CSF1RP07333 972 aa20.53■□□□□ 0.88
SQSTM1-202ENST00000389805 H2AFXP16104 143 aaPredicted RBP20.53■□□□□ 0.88
SQSTM1-202ENST00000389805 TRIM28Q13263 835 aaKnown RBP20.53■□□□□ 0.88
SQSTM1-202ENST00000389805 CERS3Q8IU89 383 aa20.53■□□□□ 0.88
SQSTM1-202ENST00000389805 MAP3K15Q6ZN16 1313 aa20.53■□□□□ 0.88
SQSTM1-202ENST00000389805 ITGA6P23229 1130 aa20.53■□□□□ 0.88
SQSTM1-202ENST00000389805 SARM1Q6SZW1 724 aa20.53■□□□□ 0.88
SQSTM1-202ENST00000389805 LDHAL6AQ6ZMR3 332 aa20.53■□□□□ 0.88
SQSTM1-202ENST00000389805 NLRP10Q86W26 655 aa20.53■□□□□ 0.88
SQSTM1-202ENST00000389805 PUS7LQ9H0K6 701 aaKnown RBP20.53■□□□□ 0.88
SQSTM1-202ENST00000389805 STX1AQ16623 288 aa20.52■□□□□ 0.88
SQSTM1-202ENST00000389805 E4F1Q66K89 784 aaPredicted RBP20.52■□□□□ 0.88
SQSTM1-202ENST00000389805 CCAR1Q8IX12 1150 aaKnown RBP20.52■□□□□ 0.88
SQSTM1-202ENST00000389805 DHX40Q8IX18 779 aaKnown RBP20.52■□□□□ 0.88
SQSTM1-202ENST00000389805 GUCY1B3Q02153 619 aa20.52■□□□□ 0.88
SQSTM1-202ENST00000389805 METTL24Q5JXM2 366 aa20.52■□□□□ 0.88
SQSTM1-202ENST00000389805 NSUN7Q8NE18 718 aaKnown RBP20.52■□□□□ 0.88
SQSTM1-202ENST00000389805 TTLL11Q8NHH1 800 aa20.52■□□□□ 0.88
SQSTM1-202ENST00000389805 PAPPAQ13219 1627 aa20.52■□□□□ 0.88
SQSTM1-202ENST00000389805 PFKFB2O60825 505 aa20.52■□□□□ 0.87
SQSTM1-202ENST00000389805 SEC31AO94979 1220 aaKnown RBP20.52■□□□□ 0.87
SQSTM1-202ENST00000389805 RESTQ13127 1097 aa20.52■□□□□ 0.87
SQSTM1-202ENST00000389805 ZCCHC17Q9NP64 241 aaKnown RBP20.52■□□□□ 0.87
SQSTM1-202ENST00000389805 RAD51AP2Q09MP3 1159 aa20.51■□□□□ 0.87
SQSTM1-202ENST00000389805 ZBTB9Q96C00 473 aa20.51■□□□□ 0.87
SQSTM1-202ENST00000389805 TEX13AQ9BXU3 409 aaPredicted RBP20.51■□□□□ 0.87
SQSTM1-202ENST00000389805 GOLPH3LQ9H4A5 285 aa20.51■□□□□ 0.87
SQSTM1-202ENST00000389805 ZKSCAN7Q9P0L1 754 aaPredicted RBP20.51■□□□□ 0.87
SQSTM1-202ENST00000389805 AKAP2Q9Y2D5 859 aa20.51■□□□□ 0.87
SQSTM1-202ENST00000389805 CYP19A1P11511 503 aaPredicted RBP20.51■□□□□ 0.87
SQSTM1-202ENST00000389805 HOMER1Q86YM7 354 aa20.51■□□□□ 0.87
SQSTM1-202ENST00000389805 RAB11FIP4Q86YS3 637 aa20.51■□□□□ 0.87
SQSTM1-202ENST00000389805 EPC1Q9H2F5 836 aa20.51■□□□□ 0.87
SQSTM1-202ENST00000389805 PTPDC1A2A3K4 754 aa20.5■□□□□ 0.87
SQSTM1-202ENST00000389805 HMGB1P09429 215 aaKnown RBP20.5■□□□□ 0.87
SQSTM1-202ENST00000389805 PPP1R13BQ96KQ4 1090 aa20.5■□□□□ 0.87
SQSTM1-202ENST00000389805 RIPOR2Q9Y4F9 1068 aa20.5■□□□□ 0.87
SQSTM1-202ENST00000389805 FGAP02671 866 aa20.5■□□□□ 0.87
SQSTM1-202ENST00000389805 SMARCC2Q8TAQ2 1214 aa20.5■□□□□ 0.87
SQSTM1-202ENST00000389805 TRMT112Q9UI30 125 aaKnown RBP20.5■□□□□ 0.87
SQSTM1-202ENST00000389805 SMC2O95347 1197 aa20.49■□□□□ 0.87
SQSTM1-202ENST00000389805 ST5P78524 1137 aa20.49■□□□□ 0.87
SQSTM1-202ENST00000389805 HELBQ8NG08 1087 aaPredicted RBP20.49■□□□□ 0.87
SQSTM1-202ENST00000389805 CNNM1Q9NRU3 951 aa20.49■□□□□ 0.87
SQSTM1-202ENST00000389805 FEZ2Q9UHY8 353 aaPredicted RBP20.49■□□□□ 0.87
SQSTM1-202ENST00000389805 IRS4O14654 1257 aaPredicted RBP20.49■□□□□ 0.87
SQSTM1-202ENST00000389805 PDIA3P30101 505 aaKnown RBP20.49■□□□□ 0.87
SQSTM1-202ENST00000389805 MCAMP43121 646 aa20.49■□□□□ 0.87
SQSTM1-202ENST00000389805 TMC6Q7Z403 805 aa20.49■□□□□ 0.87
SQSTM1-202ENST00000389805 ABCA3Q99758 1704 aa20.49■□□□□ 0.87
SQSTM1-202ENST00000389805 SNAP23O00161 211 aa20.49■□□□□ 0.87
SQSTM1-202ENST00000389805 NBPF11Q86T75 865 aa20.49■□□□□ 0.87
SQSTM1-202ENST00000389805 PLA2G12BQ9BX93 195 aa20.49■□□□□ 0.87
SQSTM1-202ENST00000389805 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.49■□□□□ 0.878e-7■□□□□ 10.8
SQSTM1-202ENST00000389805 DENND2AQ9ULE3 1009 aa20.48■□□□□ 0.87
SQSTM1-202ENST00000389805 PDIA4P13667 645 aaKnown RBP20.48■□□□□ 0.87
SQSTM1-202ENST00000389805 ZFP91Q96JP5 570 aaPredicted RBP20.48■□□□□ 0.87
SQSTM1-202ENST00000389805 DNAI1Q9UI46 699 aa20.48■□□□□ 0.87
SQSTM1-202ENST00000389805 LAMA4Q16363 1823 aa20.47■□□□□ 0.87
SQSTM1-202ENST00000389805 CAVIN2O95810 425 aa20.47■□□□□ 0.87
SQSTM1-202ENST00000389805 TMCO3Q6UWJ1 677 aa20.47■□□□□ 0.87
SQSTM1-202ENST00000389805 AGXT2Q9BYV1 514 aa20.47■□□□□ 0.87
SQSTM1-202ENST00000389805 CTSWP56202 376 aa20.47■□□□□ 0.87
SQSTM1-202ENST00000389805 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.47■□□□□ 0.87
SQSTM1-202ENST00000389805 UBXN4Q92575 508 aa20.47■□□□□ 0.87
SQSTM1-202ENST00000389805 L2HGDHQ9H9P8 463 aa20.47■□□□□ 0.87
SQSTM1-202ENST00000389805 KINO60870 393 aaKnown RBP20.46■□□□□ 0.87
SQSTM1-202ENST00000389805 ARMCX5Q6P1M9 558 aa20.46■□□□□ 0.87
SQSTM1-202ENST00000389805 EXOC5O00471 708 aa20.46■□□□□ 0.87
SQSTM1-202ENST00000389805 OTUD7BQ6GQQ9 843 aa20.46■□□□□ 0.87
SQSTM1-202ENST00000389805 CCDC73Q6ZRK6 1079 aa20.46■□□□□ 0.87
SQSTM1-202ENST00000389805 NKX2-3Q8TAU0 364 aa20.46■□□□□ 0.87
SQSTM1-202ENST00000389805 ADD1P35611 737 aaKnown RBP20.46■□□□□ 0.87
SQSTM1-202ENST00000389805 KRBA2Q6ZNG9 492 aa20.46■□□□□ 0.87
SQSTM1-202ENST00000389805 FAM177A1Q8N128 213 aaPredicted RBP20.46■□□□□ 0.87
SQSTM1-202ENST00000389805 XPO4Q9C0E2 1151 aaKnown RBP20.46■□□□□ 0.87
SQSTM1-202ENST00000389805 IFNKQ9P0W0 207 aa20.46■□□□□ 0.87
SQSTM1-202ENST00000389805 ANKRD18BA2A2Z9 1011 aa20.45■□□□□ 0.86
SQSTM1-202ENST00000389805 GPAA1O43292 621 aa20.45■□□□□ 0.86
SQSTM1-202ENST00000389805 CEP57L1Q8IYX8 460 aa20.45■□□□□ 0.86
SQSTM1-202ENST00000389805 SMARCE1Q969G3 411 aa20.45■□□□□ 0.86
SQSTM1-202ENST00000389805 CCDC34Q96HJ3 373 aa20.45■□□□□ 0.86
SQSTM1-202ENST00000389805 ANO10Q9NW15 660 aa20.45■□□□□ 0.86
SQSTM1-202ENST00000389805 CFAP45Q9UL16 551 aa20.45■□□□□ 0.86
SQSTM1-202ENST00000389805 RIC1Q4ADV7 1423 aa20.45■□□□□ 0.86
SQSTM1-202ENST00000389805 KIF2AO00139 706 aaPredicted RBP20.45■□□□□ 0.86
SQSTM1-202ENST00000389805 GYS2P54840 703 aa20.45■□□□□ 0.86
SQSTM1-202ENST00000389805 CCDC93Q567U6 631 aa20.45■□□□□ 0.86
SQSTM1-202ENST00000389805 DZIP3Q86Y13 1208 aaKnown RBP20.45■□□□□ 0.86
SQSTM1-202ENST00000389805 LLPHQ9BRT6 129 aaKnown RBP20.45■□□□□ 0.86
SQSTM1-202ENST00000389805 UBN2Q6ZU65 1347 aa20.45■□□□□ 0.86
SQSTM1-202ENST00000389805 SLC20A2Q08357 652 aa20.44■□□□□ 0.86
SQSTM1-202ENST00000389805 TEX35Q5T0J7 233 aa20.44■□□□□ 0.86
SQSTM1-202ENST00000389805 APPBP2Q92624 585 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms