RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 BAG1Q99933 345 aaPredicted RBP13.01□□□□□ -0.33
VPS13A-205ENST00000376636 RTL9Q8NET4 1388 aa13.01□□□□□ -0.33
VPS13A-205ENST00000376636 ZBTB43O43298 467 aa13.01□□□□□ -0.33
VPS13A-205ENST00000376636 CAMSAP2Q08AD1 1489 aa13□□□□□ -0.33
VPS13A-205ENST00000376636 PALM3A6NDB9 673 aaPredicted RBP13□□□□□ -0.33
VPS13A-205ENST00000376636 SPOPO43791 374 aa13□□□□□ -0.33
VPS13A-205ENST00000376636 HIP1RO75146 1068 aa13□□□□□ -0.33
VPS13A-205ENST00000376636 CCDC141Q6ZP82 1450 aa13□□□□□ -0.33
VPS13A-205ENST00000376636 ERO1AQ96HE7 468 aa13□□□□□ -0.33
VPS13A-205ENST00000376636 EPB41P11171 864 aaKnown RBP13□□□□□ -0.33
VPS13A-205ENST00000376636 RTN1Q16799 776 aa13□□□□□ -0.33
VPS13A-205ENST00000376636 VAT1LQ9HCJ6 419 aa13□□□□□ -0.33
VPS13A-205ENST00000376636 BAG5Q9UL15 447 aa13□□□□□ -0.33
VPS13A-205ENST00000376636 ORC6Q9Y5N6 252 aa13□□□□□ -0.33
VPS13A-205ENST00000376636 SYF2O95926 243 aaKnown RBP13□□□□□ -0.33
VPS13A-205ENST00000376636 ZC3H6P61129 1189 aaKnown RBP13□□□□□ -0.33
VPS13A-205ENST00000376636 PNMA8AQ86V59 439 aaPredicted RBP13□□□□□ -0.33
VPS13A-205ENST00000376636 RILPQ96NA2 401 aa13□□□□□ -0.33
VPS13A-205ENST00000376636 CCT6AP40227 531 aaKnown RBP13□□□□□ -0.33
VPS13A-205ENST00000376636 ARHGAP4P98171 946 aa13□□□□□ -0.33
VPS13A-205ENST00000376636 TAF7Q15545 349 aaPredicted RBP13□□□□□ -0.33
VPS13A-205ENST00000376636 NAPGQ99747 312 aaPredicted RBP13□□□□□ -0.33
VPS13A-205ENST00000376636 TTF2Q9UNY4 1162 aaKnown RBP13□□□□□ -0.33
VPS13A-205ENST00000376636 AKR1B15C9JRZ8 316 aaPredicted RBP13□□□□□ -0.33
VPS13A-205ENST00000376636 CCDC124Q96CT7 223 aaKnown RBP13□□□□□ -0.33
VPS13A-205ENST00000376636 NUTM2AQ8IVF1 878 aaPredicted RBP13□□□□□ -0.33
VPS13A-205ENST00000376636 SYCE1Q8N0S2 351 aa13□□□□□ -0.33
VPS13A-205ENST00000376636 RASEFQ8IZ41 740 aa13□□□□□ -0.33
VPS13A-205ENST00000376636 P3H4Q92791 437 aa13□□□□□ -0.33
VPS13A-205ENST00000376636 SIRT1Q96EB6 747 aa13□□□□□ -0.33
VPS13A-205ENST00000376636 ZNF830Q96NB3 372 aaPredicted RBP13□□□□□ -0.33
VPS13A-205ENST00000376636 TSKSQ9UJT2 592 aa13□□□□□ -0.33
VPS13A-205ENST00000376636 CYP26C1Q6V0L0 522 aa12.99□□□□□ -0.33
VPS13A-205ENST00000376636 HEATR3Q7Z4Q2 680 aa12.99□□□□□ -0.33
VPS13A-205ENST00000376636 EVCP57679 992 aa12.99□□□□□ -0.33
VPS13A-205ENST00000376636 RPS6KA2Q15349 733 aa12.99□□□□□ -0.33
VPS13A-205ENST00000376636 OSCARQ8IYS5 282 aa12.99□□□□□ -0.33
VPS13A-205ENST00000376636 PLCD3Q8N3E9 789 aa12.99□□□□□ -0.33
VPS13A-205ENST00000376636 CDK19Q9BWU1 502 aa12.99□□□□□ -0.33
VPS13A-205ENST00000376636 EHBP1L1Q8N3D4 1523 aa12.99□□□□□ -0.33
VPS13A-205ENST00000376636 ALG1Q9BT22 464 aa12.99□□□□□ -0.33
VPS13A-205ENST00000376636 PRDM11Q9NQV5 511 aa12.99□□□□□ -0.33
VPS13A-205ENST00000376636 RNF8O76064 485 aa12.99□□□□□ -0.33
VPS13A-205ENST00000376636 PLCB4Q15147 1175 aa12.99□□□□□ -0.33
VPS13A-205ENST00000376636 TBC1D9Q6ZT07 1266 aa12.99□□□□□ -0.33
VPS13A-205ENST00000376636 RLBP1P12271 317 aa12.99□□□□□ -0.33
VPS13A-205ENST00000376636 DIXDC1Q155Q3 683 aa12.99□□□□□ -0.33
VPS13A-205ENST00000376636 SPATS2LQ9NUQ6 558 aaKnown RBP12.99□□□□□ -0.33
VPS13A-205ENST00000376636 EPS15L1Q9UBC2 864 aa12.99□□□□□ -0.33
VPS13A-205ENST00000376636 TROVE2P10155 538 aaKnown RBP eCLIP12.99□□□□□ -0.33
VPS13A-205ENST00000376636 TYRO3Q06418 890 aa12.99□□□□□ -0.33
VPS13A-205ENST00000376636 PAXIP1Q6ZW49 1069 aaPredicted RBP12.99□□□□□ -0.33
VPS13A-205ENST00000376636 RAD50Q92878 1312 aa12.99□□□□□ -0.33
VPS13A-205ENST00000376636 PDZD8Q8NEN9 1154 aa12.99□□□□□ -0.33
VPS13A-205ENST00000376636 NOX5Q96PH1 765 aa12.99□□□□□ -0.33
VPS13A-205ENST00000376636 ECHDC1Q9NTX5 307 aa12.99□□□□□ -0.33
VPS13A-205ENST00000376636 NSMCE1Q8WV22 266 aa12.98□□□□□ -0.33
VPS13A-205ENST00000376636 DAPK3O43293 454 aa12.98□□□□□ -0.33
VPS13A-205ENST00000376636 TMEM132EQ6IEE7 984 aa12.98□□□□□ -0.33
VPS13A-205ENST00000376636 RBSNQ9H1K0 784 aa12.98□□□□□ -0.33
VPS13A-205ENST00000376636 PPP1R9AQ9ULJ8 1098 aa12.98□□□□□ -0.33
VPS13A-205ENST00000376636 SLC12A2P55011 1212 aa12.98□□□□□ -0.33
VPS13A-205ENST00000376636 ATL3Q6DD88 541 aa12.98□□□□□ -0.33
VPS13A-205ENST00000376636 KCNH5Q8NCM2 988 aa12.98□□□□□ -0.33
VPS13A-205ENST00000376636 KRT5P13647 590 aa12.98□□□□□ -0.33
VPS13A-205ENST00000376636 LMOD1P29536 600 aaPredicted RBP12.98□□□□□ -0.33
VPS13A-205ENST00000376636 CALM1P0DP23 149 aa12.98□□□□□ -0.33
VPS13A-205ENST00000376636 CALM2P0DP24 149 aa12.98□□□□□ -0.33
VPS13A-205ENST00000376636 CALM3P0DP25 149 aa12.98□□□□□ -0.33
VPS13A-205ENST00000376636 MX2P20592 715 aa12.98□□□□□ -0.33
VPS13A-205ENST00000376636 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.98□□□□□ -0.33
VPS13A-205ENST00000376636 TPX2Q9ULW0 747 aaKnown RBP12.98□□□□□ -0.33
VPS13A-205ENST00000376636 KRT2P35908 639 aa12.98□□□□□ -0.33
VPS13A-205ENST00000376636 SPC25Q9HBM1 224 aa12.98□□□□□ -0.33
VPS13A-205ENST00000376636 LRPPRCP42704 1394 aaKnown RBP12.98□□□□□ -0.33
VPS13A-205ENST00000376636 HSP90AA4PQ58FG1 418 aa12.98□□□□□ -0.33
VPS13A-205ENST00000376636 TRIM75PA6NK02 468 aa12.98□□□□□ -0.33
VPS13A-205ENST00000376636 RNF40O75150 1001 aa12.98□□□□□ -0.33
VPS13A-205ENST00000376636 SMTNP53814 917 aa12.98□□□□□ -0.33
VPS13A-205ENST00000376636 PAK2Q13177 524 aa12.98□□□□□ -0.33
VPS13A-205ENST00000376636 LRRC9Q6ZRR7 1453 aa12.97□□□□□ -0.33
VPS13A-205ENST00000376636 GNA11P29992 359 aa12.97□□□□□ -0.33
VPS13A-205ENST00000376636 TRIM68Q6AZZ1 485 aa12.97□□□□□ -0.33
VPS13A-205ENST00000376636 ZKSCAN3Q9BRR0 538 aa12.97□□□□□ -0.33
VPS13A-205ENST00000376636 NAPAP54920 295 aa12.97□□□□□ -0.33
VPS13A-205ENST00000376636 RAB17Q9H0T7 212 aa12.97□□□□□ -0.33
VPS13A-205ENST00000376636 PHBP35232 272 aa12.97□□□□□ -0.33
VPS13A-205ENST00000376636 KRT79Q5XKE5 535 aa12.97□□□□□ -0.33
VPS13A-205ENST00000376636 BRAPQ7Z569 592 aa12.97□□□□□ -0.33
VPS13A-205ENST00000376636 MRPL46Q9H2W6 279 aaKnown RBP12.97□□□□□ -0.33
VPS13A-205ENST00000376636 UTP14CQ5TAP6 766 aaKnown RBP12.97□□□□□ -0.33
VPS13A-205ENST00000376636 ATP6V1AP38606 617 aa12.97□□□□□ -0.33
VPS13A-205ENST00000376636 CNPY2Q9Y2B0 182 aa12.97□□□□□ -0.33
VPS13A-205ENST00000376636 PPFIA4O75335 1185 aa12.97□□□□□ -0.33
VPS13A-205ENST00000376636 KIF11P52732 1056 aa12.97□□□□□ -0.33
VPS13A-205ENST00000376636 CDR2Q01850 454 aa12.97□□□□□ -0.33
VPS13A-205ENST00000376636 KLHL14Q9P2G3 628 aa12.97□□□□□ -0.33
VPS13A-205ENST00000376636 TMPOP42166 694 aaKnown RBP12.97□□□□□ -0.33
VPS13A-205ENST00000376636 SPTLC2O15270 562 aa12.97□□□□□ -0.33
VPS13A-205ENST00000376636 CCDC93Q567U6 631 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms