RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 NUP188Q5SRE5 1749 aa12.89□□□□□ -0.35
CCDC40-203ENST00000374877 BIN1O00499 593 aa12.89□□□□□ -0.35
CCDC40-203ENST00000374877 NBPF11Q86T75 865 aa12.89□□□□□ -0.35
CCDC40-203ENST00000374877 IFNKQ9P0W0 207 aa12.89□□□□□ -0.35
CCDC40-203ENST00000374877 NEURL1BA8MQ27 555 aa12.89□□□□□ -0.35
CCDC40-203ENST00000374877 IL6STP40189 918 aaPredicted RBP12.89□□□□□ -0.35
CCDC40-203ENST00000374877 GORABQ5T7V8 394 aa12.89□□□□□ -0.35
CCDC40-203ENST00000374877 XPO4Q9C0E2 1151 aaKnown RBP12.89□□□□□ -0.35
CCDC40-203ENST00000374877 SFPQP23246 707 aaKnown RBP eCLIP12.88□□□□□ -0.35
CCDC40-203ENST00000374877 PIP4K2AP48426 406 aaPredicted RBP12.88□□□□□ -0.35
CCDC40-203ENST00000374877 GCKRQ14397 625 aa12.88□□□□□ -0.35
CCDC40-203ENST00000374877 DPCR1Q3MIW9 517 aa12.88□□□□□ -0.35
CCDC40-203ENST00000374877 E4F1Q66K89 784 aaPredicted RBP12.88□□□□□ -0.35
CCDC40-203ENST00000374877 PCDHA7Q9UN72 937 aa12.88□□□□□ -0.35
CCDC40-203ENST00000374877 HMGB1P09429 215 aaKnown RBP12.88□□□□□ -0.35
CCDC40-203ENST00000374877 ATP6V1AP38606 617 aa12.88□□□□□ -0.35
CCDC40-203ENST00000374877 HOMER1Q86YM7 354 aa12.88□□□□□ -0.35
CCDC40-203ENST00000374877 PPP1R13BQ96KQ4 1090 aa12.88□□□□□ -0.35
CCDC40-203ENST00000374877 NRDCO43847 1150 aa12.87□□□□□ -0.35
CCDC40-203ENST00000374877 NDUFA8P51970 172 aa12.87□□□□□ -0.35
CCDC40-203ENST00000374877 STK38Q15208 465 aa12.87□□□□□ -0.35
CCDC40-203ENST00000374877 OTUD7BQ6GQQ9 843 aa12.87□□□□□ -0.35
CCDC40-203ENST00000374877 TTLL7Q6ZT98 887 aa12.87□□□□□ -0.35
CCDC40-203ENST00000374877 LRRN4CLQ8ND94 238 aa12.87□□□□□ -0.35
CCDC40-203ENST00000374877 OSBPL5Q9H0X9 879 aaPredicted RBP12.87□□□□□ -0.35
CCDC40-203ENST00000374877 CCDC87Q9NVE4 849 aa12.87□□□□□ -0.35
CCDC40-203ENST00000374877 CCDC66A2RUB6 948 aa12.87□□□□□ -0.35
CCDC40-203ENST00000374877 KIF6Q6ZMV9 814 aa12.87□□□□□ -0.35
CCDC40-203ENST00000374877 FAM196AQ6ZSG2 479 aa12.87□□□□□ -0.35
CCDC40-203ENST00000374877 FMR1NBQ8N0W7 255 aaPredicted RBP12.87□□□□□ -0.35
CCDC40-203ENST00000374877 ZNF446Q9NWS9 450 aa12.87□□□□□ -0.35
CCDC40-203ENST00000374877 BTAF1O14981 1849 aa12.87□□□□□ -0.35
CCDC40-203ENST00000374877 A0A0G2JLW4 131 aa12.87□□□□□ -0.35
CCDC40-203ENST00000374877 POLR3DP05423 398 aaPredicted RBP12.87□□□□□ -0.35
CCDC40-203ENST00000374877 ARMCX5Q6P1M9 558 aa12.87□□□□□ -0.35
CCDC40-203ENST00000374877 KRT27Q7Z3Y8 459 aa12.87□□□□□ -0.35
CCDC40-203ENST00000374877 ILDR1Q86SU0 546 aaPredicted RBP12.87□□□□□ -0.35
CCDC40-203ENST00000374877 CCDC150Q8NCX0 1101 aa12.87□□□□□ -0.35
CCDC40-203ENST00000374877 IMPACTQ9P2X3 320 aa12.87□□□□□ -0.35
CCDC40-203ENST00000374877 PTPN12Q05209 780 aaKnown RBP12.86□□□□□ -0.35
CCDC40-203ENST00000374877 ITPK1Q13572 414 aa12.86□□□□□ -0.35
CCDC40-203ENST00000374877 ATL3Q6DD88 541 aa12.86□□□□□ -0.35
CCDC40-203ENST00000374877 UBE3BQ7Z3V4 1068 aa12.86□□□□□ -0.35
CCDC40-203ENST00000374877 NEUROD6Q96NK8 337 aa12.86□□□□□ -0.35
CCDC40-203ENST00000374877 COPRSQ9NQ92 184 aa12.86□□□□□ -0.35
CCDC40-203ENST00000374877 COL5A3P25940 1745 aaPredicted RBP12.86□□□□□ -0.35
CCDC40-203ENST00000374877 GOLIM4O00461 696 aa12.86□□□□□ -0.35
CCDC40-203ENST00000374877 ISM2Q6H9L7 571 aa12.86□□□□□ -0.35
CCDC40-203ENST00000374877 INTS5Q6P9B9 1019 aaKnown RBP12.86□□□□□ -0.35
CCDC40-203ENST00000374877 HAUS7Q99871 368 aa12.86□□□□□ -0.35
CCDC40-203ENST00000374877 KIAA1468Q9P260 1216 aa12.86□□□□□ -0.35
CCDC40-203ENST00000374877 TAOK2Q9UL54 1235 aa12.86□□□□□ -0.35
CCDC40-203ENST00000374877 ZBTB1Q9Y2K1 713 aa12.86□□□□□ -0.35
CCDC40-203ENST00000374877 SBF2Q86WG5 1849 aa12.86□□□□□ -0.35
CCDC40-203ENST00000374877 MAP3K15Q6ZN16 1313 aa12.86□□□□□ -0.35
CCDC40-203ENST00000374877 TPM4P67936 248 aa12.85□□□□□ -0.35
CCDC40-203ENST00000374877 TRIM28Q13263 835 aaKnown RBP12.85□□□□□ -0.35
CCDC40-203ENST00000374877 ADALQ6DHV7 355 aa12.85□□□□□ -0.35
CCDC40-203ENST00000374877 ERVV-1B6SEH8 477 aa12.85□□□□□ -0.35
CCDC40-203ENST00000374877 BMS1Q14692 1282 aaKnown RBP12.85□□□□□ -0.35
CCDC40-203ENST00000374877 ARHGAP29Q52LW3 1261 aa12.85□□□□□ -0.35
CCDC40-203ENST00000374877 HSP90AB3PQ58FF7 597 aa12.85□□□□□ -0.35
CCDC40-203ENST00000374877 KBTBD3Q8NAB2 608 aa12.85□□□□□ -0.35
CCDC40-203ENST00000374877 CNTNAP4Q9C0A0 1308 aa12.85□□□□□ -0.35
CCDC40-203ENST00000374877 ZBTB22O15209 634 aa12.85□□□□□ -0.35
CCDC40-203ENST00000374877 LMOD1P29536 600 aaPredicted RBP12.85□□□□□ -0.35
CCDC40-203ENST00000374877 PDIA3P30101 505 aaKnown RBP12.85□□□□□ -0.35
CCDC40-203ENST00000374877 CRKLP46109 303 aaKnown RBP12.85□□□□□ -0.35
CCDC40-203ENST00000374877 EIF5P55010 431 aaKnown RBP12.85□□□□□ -0.35
CCDC40-203ENST00000374877 CLIC4Q9Y696 253 aa12.85□□□□□ -0.35
CCDC40-203ENST00000374877 CARMIL3Q8ND23 1372 aa12.85□□□□□ -0.35
CCDC40-203ENST00000374877 E7EWF7 191 aa12.84□□□□□ -0.35
CCDC40-203ENST00000374877 SLC3A2P08195 630 aaKnown RBP12.84□□□□□ -0.35
CCDC40-203ENST00000374877 CCDC191Q8NCU4 936 aa12.84□□□□□ -0.35
CCDC40-203ENST00000374877 NOL10Q9BSC4 688 aaKnown RBP12.84□□□□□ -0.35
CCDC40-203ENST00000374877 ISCA1Q9BUE6 129 aa12.84□□□□□ -0.35
CCDC40-203ENST00000374877 L2HGDHQ9H9P8 463 aa12.84□□□□□ -0.35
CCDC40-203ENST00000374877 KCND1Q9NSA2 647 aa12.84□□□□□ -0.35
CCDC40-203ENST00000374877 DNAI1Q9UI46 699 aa12.84□□□□□ -0.35
CCDC40-203ENST00000374877 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.84□□□□□ -0.35
CCDC40-203ENST00000374877 ATP5J2-PTCD1G3V325 749 aa12.84□□□□□ -0.35
CCDC40-203ENST00000374877 CLCN6P51797 869 aa12.84□□□□□ -0.35
CCDC40-203ENST00000374877 TCIRG1Q13488 830 aa12.84□□□□□ -0.35
CCDC40-203ENST00000374877 RC3H1Q5TC82 1133 aaKnown RBP12.84□□□□□ -0.35
CCDC40-203ENST00000374877 RGL2O15211 777 aa12.84□□□□□ -0.35
CCDC40-203ENST00000374877 EXOSC10Q01780 885 aaKnown RBP12.84□□□□□ -0.35
CCDC40-203ENST00000374877 FAM53CQ9NYF3 392 aa12.84□□□□□ -0.35
CCDC40-203ENST00000374877 RTEL1Q9NZ71 1219 aa12.84□□□□□ -0.35
CCDC40-203ENST00000374877 LY75O60449 1722 aa12.84□□□□□ -0.35
CCDC40-203ENST00000374877 PSDA5PKW4 1024 aaPredicted RBP12.83□□□□□ -0.36
CCDC40-203ENST00000374877 H2AFXP16104 143 aaPredicted RBP12.83□□□□□ -0.36
CCDC40-203ENST00000374877 RFX5P48382 616 aaPredicted RBP12.83□□□□□ -0.36
CCDC40-203ENST00000374877 RAB11FIP4Q86YS3 637 aa12.83□□□□□ -0.36
CCDC40-203ENST00000374877 LINC00301Q8NCQ3 95 aa12.83□□□□□ -0.36
CCDC40-203ENST00000374877 GPHNQ9NQX3 736 aaPredicted RBP12.83□□□□□ -0.36
CCDC40-203ENST00000374877 CWC25Q9NXE8 425 aaPredicted RBP12.83□□□□□ -0.36
CCDC40-203ENST00000374877 GIGYF2Q6Y7W6 1299 aaKnown RBP12.83□□□□□ -0.36
CCDC40-203ENST00000374877 C8orf76Q96K31 380 aa12.83□□□□□ -0.36
CCDC40-203ENST00000374877 ZBTB3Q9H5J0 574 aa12.83□□□□□ -0.36
CCDC40-203ENST00000374877 SALL1Q9NSC2 1324 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms