RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 MTX1Q13505 466 aa27.02■■□□□ 1.92
CCDC28B-201ENST00000373602 LDLRAD1Q5T700 205 aa27.02■■□□□ 1.92
CCDC28B-201ENST00000373602 ANGEL1Q9UNK9 670 aaKnown RBP27.02■■□□□ 1.92
CCDC28B-201ENST00000373602 RASA3Q14644 834 aa27.01■■□□□ 1.91
CCDC28B-201ENST00000373602 MAP3K11Q16584 847 aa27.01■■□□□ 1.91
CCDC28B-201ENST00000373602 ATP2B3Q16720 1220 aa27.01■■□□□ 1.91
CCDC28B-201ENST00000373602 CLUAP1Q96AJ1 413 aa27.01■■□□□ 1.91
CCDC28B-201ENST00000373602 TDRD3Q9H7E2 651 aaKnown RBP27.01■■□□□ 1.91
CCDC28B-201ENST00000373602 RNF186Q9NXI6 227 aa27.01■■□□□ 1.91
CCDC28B-201ENST00000373602 SUGT1Q9Y2Z0 365 aa27.01■■□□□ 1.91
CCDC28B-201ENST00000373602 SSC5DA1L4H1 1573 aa27.01■■□□□ 1.91
CCDC28B-201ENST00000373602 TNFAIP1Q13829 316 aa27■■□□□ 1.91
CCDC28B-201ENST00000373602 SUPT20HL1Q3ZLR7 823 aa27■■□□□ 1.91
CCDC28B-201ENST00000373602 ZKSCAN2Q63HK3 967 aa27■■□□□ 1.91
CCDC28B-201ENST00000373602 MRIQ9BWK5 157 aa27■■□□□ 1.91
CCDC28B-201ENST00000373602 SRGAP3O43295 1099 aa26.99■■□□□ 1.91
CCDC28B-201ENST00000373602 NBPF12Q5TAG4 269 aaPredicted RBP26.99■■□□□ 1.91
CCDC28B-201ENST00000373602 FZD1Q9UP38 647 aa26.99■■□□□ 1.91
CCDC28B-201ENST00000373602 ZBED9Q6R2W3 1325 aa26.98■■□□□ 1.91
CCDC28B-201ENST00000373602 PPP1R12BO60237 982 aaPredicted RBP26.98■■□□□ 1.91
CCDC28B-201ENST00000373602 TRPA1O75762 1119 aa26.98■■□□□ 1.91
CCDC28B-201ENST00000373602 WDR66Q8TBY9 1149 aa26.98■■□□□ 1.91
CCDC28B-201ENST00000373602 TEKT1Q969V4 418 aa26.98■■□□□ 1.91
CCDC28B-201ENST00000373602 AKAP11Q9UKA4 1901 aa26.98■■□□□ 1.91
CCDC28B-201ENST00000373602 MAST3O60307 1309 aa26.97■■□□□ 1.91
CCDC28B-201ENST00000373602 GNAI2P04899 355 aa26.97■■□□□ 1.91
CCDC28B-201ENST00000373602 TMEM57Q8N5G2 664 aa26.96■■□□□ 1.91
CCDC28B-201ENST00000373602 GNL3LQ9NVN8 582 aaKnown RBP26.96■■□□□ 1.91
CCDC28B-201ENST00000373602 CASP8AP2Q9UKL3 1982 aa26.96■■□□□ 1.91
CCDC28B-201ENST00000373602 UNCXA6NJT0 531 aa26.95■■□□□ 1.9
CCDC28B-201ENST00000373602 ZDHHC15Q96MV8 337 aa26.95■■□□□ 1.9
CCDC28B-201ENST00000373602 MYH13Q9UKX3 1938 aa26.94■■□□□ 1.9
CCDC28B-201ENST00000373602 TCP10L2B9ZVM9 353 aa26.94■■□□□ 1.9
CCDC28B-201ENST00000373602 ZBTB22O15209 634 aa26.94■■□□□ 1.9
CCDC28B-201ENST00000373602 TM4SF4P48230 202 aa26.94■■□□□ 1.9
CCDC28B-201ENST00000373602 HHIPL2Q6UWX4 724 aa26.94■■□□□ 1.9
CCDC28B-201ENST00000373602 ABHD8Q96I13 439 aa26.94■■□□□ 1.9
CCDC28B-201ENST00000373602 TEPSINQ96N21 525 aa26.94■■□□□ 1.9
CCDC28B-201ENST00000373602 USP2O75604 605 aaPredicted RBP26.93■■□□□ 1.9
CCDC28B-201ENST00000373602 PHKA1P46020 1223 aa26.93■■□□□ 1.9
CCDC28B-201ENST00000373602 TNNI2P48788 182 aa26.93■■□□□ 1.9
CCDC28B-201ENST00000373602 MKRN3Q13064 507 aaKnown RBP26.93■■□□□ 1.9
CCDC28B-201ENST00000373602 SPRYD7Q5W111 196 aa26.93■■□□□ 1.9
CCDC28B-201ENST00000373602 APOBEC3HQ6NTF7 200 aaKnown RBP26.93■■□□□ 1.9
CCDC28B-201ENST00000373602 SLC10A4Q96EP9 437 aa26.93■■□□□ 1.9
CCDC28B-201ENST00000373602 SEMA3EO15041 775 aa26.92■■□□□ 1.9
CCDC28B-201ENST00000373602 ADORA1P30542 326 aa26.92■■□□□ 1.9
CCDC28B-201ENST00000373602 IREB2P48200 963 aaKnown RBP26.92■■□□□ 1.9
CCDC28B-201ENST00000373602 DENND2AQ9ULE3 1009 aa26.92■■□□□ 1.9
CCDC28B-201ENST00000373602 CLMNQ96JQ2 1002 aa26.91■■□□□ 1.9
CCDC28B-201ENST00000373602 TMEM39BQ9GZU3 492 aa26.91■■□□□ 1.9
CCDC28B-201ENST00000373602 PNMA6EA0A0J9YXQ4 647 aa26.9■■□□□ 1.9
CCDC28B-201ENST00000373602 TIMM10P62072 90 aa26.9■■□□□ 1.9
CCDC28B-201ENST00000373602 TFCP2Q12800 502 aa26.9■■□□□ 1.9
CCDC28B-201ENST00000373602 CCDC102BQ68D86 513 aa26.9■■□□□ 1.9
CCDC28B-201ENST00000373602 CDAN1Q8IWY9 1227 aa26.9■■□□□ 1.9
CCDC28B-201ENST00000373602 AKAP2Q9Y2D5 859 aa26.9■■□□□ 1.9
CCDC28B-201ENST00000373602 SALL1Q9NSC2 1324 aa26.9■■□□□ 1.9
CCDC28B-201ENST00000373602 SREBF2Q12772 1141 aa26.89■■□□□ 1.9
CCDC28B-201ENST00000373602 FKBP1CQ5VVH2 108 aa26.89■■□□□ 1.9
CCDC28B-201ENST00000373602 TMOD2Q9NZR1 351 aa26.89■■□□□ 1.9
CCDC28B-201ENST00000373602 A0A1B0GUL7 405 aa26.88■■□□□ 1.89
CCDC28B-201ENST00000373602 ZBTB48P10074 688 aaPredicted RBP26.88■■□□□ 1.89
CCDC28B-201ENST00000373602 CACNB3P54284 484 aa26.88■■□□□ 1.89
CCDC28B-201ENST00000373602 FTSJ3Q8IY81 847 aaKnown RBP26.88■■□□□ 1.89
CCDC28B-201ENST00000373602 ANKRD13AQ8IZ07 590 aa26.88■■□□□ 1.89
CCDC28B-201ENST00000373602 WNK4Q96J92 1243 aa26.88■■□□□ 1.89
CCDC28B-201ENST00000373602 MCOLN1Q9GZU1 580 aa26.88■■□□□ 1.89
CCDC28B-201ENST00000373602 PRDX5P30044 214 aa26.87■■□□□ 1.89
CCDC28B-201ENST00000373602 FAM83AQ86UY5 434 aa26.87■■□□□ 1.89
CCDC28B-201ENST00000373602 XAGE2Q96GT9 111 aa26.87■■□□□ 1.89
CCDC28B-201ENST00000373602 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP26.87■■□□□ 1.89
CCDC28B-201ENST00000373602 LDHBP07195 334 aaKnown RBP26.86■■□□□ 1.89
CCDC28B-201ENST00000373602 RLBP1P12271 317 aa26.86■■□□□ 1.89
CCDC28B-201ENST00000373602 DGKZQ13574 1117 aa26.86■■□□□ 1.89
CCDC28B-201ENST00000373602 DIXDC1Q155Q3 683 aa26.86■■□□□ 1.89
CCDC28B-201ENST00000373602 ZBTB4Q9P1Z0 1013 aaPredicted RBP26.86■■□□□ 1.89
CCDC28B-201ENST00000373602 DAGLAQ9Y4D2 1042 aa26.86■■□□□ 1.89
CCDC28B-201ENST00000373602 MANSC4A6NHS7 340 aaPredicted RBP26.85■■□□□ 1.89
CCDC28B-201ENST00000373602 G3BP1Q13283 466 aaKnown RBP eCLIP26.85■■□□□ 1.89
CCDC28B-201ENST00000373602 MVPQ14764 893 aaKnown RBP26.85■■□□□ 1.89
CCDC28B-201ENST00000373602 PDS5AQ29RF7 1337 aaKnown RBP26.85■■□□□ 1.89
CCDC28B-201ENST00000373602 TBC1D8O95759 1140 aa26.84■■□□□ 1.89
CCDC28B-201ENST00000373602 INHBEP58166 350 aa26.84■■□□□ 1.89
CCDC28B-201ENST00000373602 RASGRF1Q13972 1273 aa26.84■■□□□ 1.89
CCDC28B-201ENST00000373602 POLA2Q14181 598 aa26.84■■□□□ 1.89
CCDC28B-201ENST00000373602 ZGPATQ8N5A5 531 aaKnown RBP26.84■■□□□ 1.89
CCDC28B-201ENST00000373602 ATP8B2P98198 1209 aa26.83■■□□□ 1.89
CCDC28B-201ENST00000373602 ITPRIPQ8IWB1 547 aa26.83■■□□□ 1.89
CCDC28B-201ENST00000373602 NEUROD6Q96NK8 337 aa26.83■■□□□ 1.89
CCDC28B-201ENST00000373602 CFHR5Q9BXR6 569 aa26.83■■□□□ 1.89
CCDC28B-201ENST00000373602 OTOFQ9HC10 1997 aa26.82■■□□□ 1.88
CCDC28B-201ENST00000373602 ZBTB7BO15156 539 aaPredicted RBP26.82■■□□□ 1.88
CCDC28B-201ENST00000373602 GJA5P36382 358 aa26.82■■□□□ 1.88
CCDC28B-201ENST00000373602 CDC42EP5Q6NZY7 148 aa26.82■■□□□ 1.88
CCDC28B-201ENST00000373602 PPP1R3FQ6ZSY5 799 aaPredicted RBP26.82■■□□□ 1.88
CCDC28B-201ENST00000373602 DDX55Q8NHQ9 600 aaKnown RBP eCLIP26.82■■□□□ 1.882e-6■□□□□ 8.3
CCDC28B-201ENST00000373602 SSH3Q8TE77 659 aa26.82■■□□□ 1.88
CCDC28B-201ENST00000373602 RPAP1Q9BWH6 1393 aaPredicted RBP26.82■■□□□ 1.88
CCDC28B-201ENST00000373602 MAP3K9P80192 1104 aa26.81■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms