RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 RNF20Q5VTR2 975 aa15.64■□□□□ 0.09
SQSTM1-201ENST00000360718 C7orf43Q8WVR3 580 aa15.64■□□□□ 0.09
SQSTM1-201ENST00000360718 IL17RAQ96F46 866 aa15.64■□□□□ 0.09
SQSTM1-201ENST00000360718 SGIP1Q9BQI5 828 aa15.64■□□□□ 0.09
SQSTM1-201ENST00000360718 LMBRD1Q9NUN5 540 aa15.64■□□□□ 0.09
SQSTM1-201ENST00000360718 RBM8AQ9Y5S9 174 aaKnown RBP15.64■□□□□ 0.09
SQSTM1-201ENST00000360718 DPEP1P16444 411 aa15.64■□□□□ 0.09
SQSTM1-201ENST00000360718 ZKSCAN1P17029 563 aaPredicted RBP15.64■□□□□ 0.09
SQSTM1-201ENST00000360718 NCLP19338 710 aaKnown RBP15.64■□□□□ 0.09
SQSTM1-201ENST00000360718 NEK4P51957 841 aa15.64■□□□□ 0.09
SQSTM1-201ENST00000360718 NECTIN1Q15223 517 aa15.64■□□□□ 0.09
SQSTM1-201ENST00000360718 ILDR2Q71H61 639 aa15.64■□□□□ 0.09
SQSTM1-201ENST00000360718 MPNDQ8N594 471 aa15.64■□□□□ 0.09
SQSTM1-201ENST00000360718 MAGEB6Q8N7X4 407 aa15.64■□□□□ 0.09
SQSTM1-201ENST00000360718 TDRD7Q8NHU6 1098 aaKnown RBP15.64■□□□□ 0.09
SQSTM1-201ENST00000360718 ZNF384Q8TF68 577 aa15.64■□□□□ 0.09
SQSTM1-201ENST00000360718 LRP2BPQ9P2M1 347 aa15.64■□□□□ 0.09
SQSTM1-201ENST00000360718 ABCF2Q9UG63 623 aa15.64■□□□□ 0.09
SQSTM1-201ENST00000360718 TAF6LQ9Y6J9 622 aa15.64■□□□□ 0.09
SQSTM1-201ENST00000360718 SNED1Q8TER0 1413 aa15.64■□□□□ 0.09
SQSTM1-201ENST00000360718 CHAF1AQ13111 956 aaPredicted RBP15.63■□□□□ 0.09
SQSTM1-201ENST00000360718 UBE3CQ15386 1083 aa15.63■□□□□ 0.09
SQSTM1-201ENST00000360718 ZNF804AQ7Z570 1209 aa15.63■□□□□ 0.09
SQSTM1-201ENST00000360718 CNKSR1Q969H4 720 aa15.63■□□□□ 0.09
SQSTM1-201ENST00000360718 PPP1R9BQ96SB3 815 aa15.63■□□□□ 0.09
SQSTM1-201ENST00000360718 CD209Q9NNX6 404 aa15.63■□□□□ 0.09
SQSTM1-201ENST00000360718 SNX14Q9Y5W7 946 aa15.63■□□□□ 0.09
SQSTM1-201ENST00000360718 U3KPZ7 1027 aaPredicted RBP15.63■□□□□ 0.09
SQSTM1-201ENST00000360718 PDS5AQ29RF7 1337 aaKnown RBP15.62■□□□□ 0.09
SQSTM1-201ENST00000360718 RIMBP2O15034 1052 aa15.62■□□□□ 0.09
SQSTM1-201ENST00000360718 DPP8Q6V1X1 898 aaPredicted RBP15.62■□□□□ 0.09
SQSTM1-201ENST00000360718 ADGRA1Q86SQ6 560 aa15.62■□□□□ 0.09
SQSTM1-201ENST00000360718 ZGPATQ8N5A5 531 aaKnown RBP15.62■□□□□ 0.09
SQSTM1-201ENST00000360718 COL9A3Q14050 684 aaPredicted RBP15.61■□□□□ 0.09
SQSTM1-201ENST00000360718 SRCAPQ6ZRS2 3230 aa15.61■□□□□ 0.09
SQSTM1-201ENST00000360718 GPAA1O43292 621 aa15.61■□□□□ 0.09
SQSTM1-201ENST00000360718 HSPD1P10809 573 aaKnown RBP15.61■□□□□ 0.09
SQSTM1-201ENST00000360718 PRDX5P30044 214 aa15.61■□□□□ 0.09
SQSTM1-201ENST00000360718 PTGER2P43116 358 aa15.61■□□□□ 0.09
SQSTM1-201ENST00000360718 GRIK5Q16478 980 aa15.61■□□□□ 0.09
SQSTM1-201ENST00000360718 DSCC1Q9BVC3 393 aa15.61■□□□□ 0.09
SQSTM1-201ENST00000360718 ZBTB22O15209 634 aa15.6■□□□□ 0.09
SQSTM1-201ENST00000360718 PRPF40AO75400 957 aaKnown RBP15.6■□□□□ 0.09
SQSTM1-201ENST00000360718 IL1R1P14778 569 aa15.6■□□□□ 0.09
SQSTM1-201ENST00000360718 CREB3L3Q68CJ9 461 aa15.6■□□□□ 0.09
SQSTM1-201ENST00000360718 CAVIN1Q6NZI2 390 aaKnown RBP15.6■□□□□ 0.09
SQSTM1-201ENST00000360718 KCNB2Q92953 911 aa15.6■□□□□ 0.09
SQSTM1-201ENST00000360718 INTS4Q96HW7 963 aaKnown RBP15.6■□□□□ 0.09
SQSTM1-201ENST00000360718 TMX3Q96JJ7 454 aa15.6■□□□□ 0.09
SQSTM1-201ENST00000360718 SLC27A2O14975 620 aa15.6■□□□□ 0.09
SQSTM1-201ENST00000360718 POLD1P28340 1107 aa15.6■□□□□ 0.09
SQSTM1-201ENST00000360718 ADCK5Q3MIX3 580 aa15.6■□□□□ 0.09
SQSTM1-201ENST00000360718 NAP1L5Q96NT1 182 aaPredicted RBP15.6■□□□□ 0.09
SQSTM1-201ENST00000360718 RAI14Q9P0K7 980 aa15.6■□□□□ 0.09
SQSTM1-201ENST00000360718 MAST2Q6P0Q8 1798 aa15.6■□□□□ 0.09
SQSTM1-201ENST00000360718 C21orf2O43822 256 aa15.59■□□□□ 0.09
SQSTM1-201ENST00000360718 CUL4AQ13619 759 aa15.59■□□□□ 0.09
SQSTM1-201ENST00000360718 PKP1Q13835 747 aa15.59■□□□□ 0.09
SQSTM1-201ENST00000360718 ZSCAN23Q3MJ62 389 aa15.59■□□□□ 0.09
SQSTM1-201ENST00000360718 BRCA1P38398 1863 aaKnown RBP15.59■□□□□ 0.09
SQSTM1-201ENST00000360718 TTLL6Q8N841 843 aa15.59■□□□□ 0.09
SQSTM1-201ENST00000360718 UPF3BQ9BZI7 483 aaKnown RBP15.59■□□□□ 0.09
SQSTM1-201ENST00000360718 LAMA4Q16363 1823 aa15.58■□□□□ 0.09
SQSTM1-201ENST00000360718 MBD3O95983 291 aa15.58■□□□□ 0.08
SQSTM1-201ENST00000360718 DOK7Q18PE1 504 aa15.58■□□□□ 0.08
SQSTM1-201ENST00000360718 TTLL5Q6EMB2 1281 aa15.58■□□□□ 0.08
SQSTM1-201ENST00000360718 MIGA1Q8NAN2 632 aa15.58■□□□□ 0.08
SQSTM1-201ENST00000360718 AIDAQ96BJ3 306 aa15.58■□□□□ 0.08
SQSTM1-201ENST00000360718 NSUN4Q96CB9 384 aaKnown RBP15.58■□□□□ 0.08
SQSTM1-201ENST00000360718 CTNNA3Q9UI47 895 aa15.58■□□□□ 0.08
SQSTM1-201ENST00000360718 ZDHHC9Q9Y397 364 aa15.58■□□□□ 0.08
SQSTM1-201ENST00000360718 MBD4O95243 580 aa15.57■□□□□ 0.08
SQSTM1-201ENST00000360718 CYP21A2P08686 494 aa15.57■□□□□ 0.08
SQSTM1-201ENST00000360718 CYP7A1P22680 504 aa15.57■□□□□ 0.08
SQSTM1-201ENST00000360718 PSMA5P28066 241 aa15.57■□□□□ 0.08
SQSTM1-201ENST00000360718 MECOMQ03112 1051 aa15.57■□□□□ 0.08
SQSTM1-201ENST00000360718 SPTY2D1Q68D10 685 aaPredicted RBP15.57■□□□□ 0.08
SQSTM1-201ENST00000360718 WDR66Q8TBY9 1149 aa15.57■□□□□ 0.08
SQSTM1-201ENST00000360718 STRBPQ96SI9 672 aaKnown RBP15.57■□□□□ 0.08
SQSTM1-201ENST00000360718 ARMT1Q9H993 441 aa15.57■□□□□ 0.08
SQSTM1-201ENST00000360718 SALL1Q9NSC2 1324 aa15.57■□□□□ 0.08
SQSTM1-201ENST00000360718 CPA1P15085 419 aa15.57■□□□□ 0.08
SQSTM1-201ENST00000360718 KRT32Q14532 448 aa15.57■□□□□ 0.08
SQSTM1-201ENST00000360718 LCORLQ8N3X6 602 aa15.57■□□□□ 0.08
SQSTM1-201ENST00000360718 RTFDC1Q9BY42 306 aaPredicted RBP15.57■□□□□ 0.08
SQSTM1-201ENST00000360718 TM6SF1Q9BZW5 370 aa15.57■□□□□ 0.08
SQSTM1-201ENST00000360718 ZC3H12CQ9C0D7 883 aaKnown RBP15.57■□□□□ 0.08
SQSTM1-201ENST00000360718 PPP1R1BQ9UD71 204 aaPredicted RBP15.57■□□□□ 0.08
SQSTM1-201ENST00000360718 SCN9AQ15858 1988 aa15.57■□□□□ 0.08
SQSTM1-201ENST00000360718 TMED8Q6PL24 325 aaPredicted RBP15.56■□□□□ 0.08
SQSTM1-201ENST00000360718 JAKMIP1Q96N16 626 aaKnown RBP15.56■□□□□ 0.08
SQSTM1-201ENST00000360718 UTRNP46939 3433 aa15.56■□□□□ 0.08
SQSTM1-201ENST00000360718 IGSF3O75054 1194 aa15.56■□□□□ 0.08
SQSTM1-201ENST00000360718 CASTP20810 708 aaKnown RBP15.56■□□□□ 0.08
SQSTM1-201ENST00000360718 EYA3Q99504 573 aa15.56■□□□□ 0.08
SQSTM1-201ENST00000360718 COA1Q9GZY4 146 aa15.56■□□□□ 0.08
SQSTM1-201ENST00000360718 KCNQ5Q9NR82 932 aa15.56■□□□□ 0.08
SQSTM1-201ENST00000360718 MYH2Q9UKX2 1941 aa15.56■□□□□ 0.08
SQSTM1-201ENST00000360718 PRKAB2O43741 272 aa15.55■□□□□ 0.08
SQSTM1-201ENST00000360718 FGAP02671 866 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms