RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 MFSD14BQ5SR56 506 aa17.59■□□□□ 0.41
VPS29-201ENST00000360579 LDHAL6AQ6ZMR3 332 aa17.59■□□□□ 0.41
VPS29-201ENST00000360579 WWC1Q8IX03 1113 aa17.59■□□□□ 0.41
VPS29-201ENST00000360579 MS4A4AQ96JQ5 239 aa17.59■□□□□ 0.41
VPS29-201ENST00000360579 ZNF70Q9UC06 446 aaPredicted RBP17.59■□□□□ 0.41
VPS29-201ENST00000360579 JAG2Q9Y219 1238 aa17.59■□□□□ 0.41
VPS29-201ENST00000360579 AOX1Q06278 1338 aa17.58■□□□□ 0.4
VPS29-201ENST00000360579 CCL15-CCL14A0A0B4J2E2 113 aa17.58■□□□□ 0.4
VPS29-201ENST00000360579 MAP3K9P80192 1104 aa17.58■□□□□ 0.4
VPS29-201ENST00000360579 CCL15Q16663 113 aa17.58■□□□□ 0.4
VPS29-201ENST00000360579 CNNM1Q9NRU3 951 aa17.58■□□□□ 0.4
VPS29-201ENST00000360579 TTF2Q9UNY4 1162 aaKnown RBP17.58■□□□□ 0.4
VPS29-201ENST00000360579 CSADQ9Y600 493 aa17.58■□□□□ 0.4
VPS29-201ENST00000360579 FXR1P51114 621 aaKnown RBP eCLIP17.57■□□□□ 0.4
VPS29-201ENST00000360579 SLC4A8Q2Y0W8 1093 aa17.57■□□□□ 0.4
VPS29-201ENST00000360579 LMBR1LQ6UX01 489 aa17.57■□□□□ 0.4
VPS29-201ENST00000360579 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.57■□□□□ 0.4
VPS29-201ENST00000360579 BRI3BPQ8WY22 251 aa17.57■□□□□ 0.4
VPS29-201ENST00000360579 TDRD3Q9H7E2 651 aaKnown RBP17.57■□□□□ 0.4
VPS29-201ENST00000360579 PLIN1O60240 522 aa17.56■□□□□ 0.4
VPS29-201ENST00000360579 VGLL4Q14135 290 aa17.56■□□□□ 0.4
VPS29-201ENST00000360579 UBE4AQ14139 1066 aa17.56■□□□□ 0.4
VPS29-201ENST00000360579 DZIP1LQ8IYY4 767 aaKnown RBP17.56■□□□□ 0.4
VPS29-201ENST00000360579 TDRD7Q8NHU6 1098 aaKnown RBP17.56■□□□□ 0.4
VPS29-201ENST00000360579 TEPSINQ96N21 525 aa17.56■□□□□ 0.4
VPS29-201ENST00000360579 ZCCHC17Q9NP64 241 aaKnown RBP17.56■□□□□ 0.4
VPS29-201ENST00000360579 PTCH2Q9Y6C5 1203 aa17.56■□□□□ 0.4
VPS29-201ENST00000360579 HIBADHP31937 336 aaKnown RBP17.55■□□□□ 0.4
VPS29-201ENST00000360579 CAP1Q01518 475 aa17.55■□□□□ 0.4
VPS29-201ENST00000360579 KIF22Q14807 665 aa17.55■□□□□ 0.4
VPS29-201ENST00000360579 BEND3Q5T5X7 828 aa17.55■□□□□ 0.4
VPS29-201ENST00000360579 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.55■□□□□ 0.4
VPS29-201ENST00000360579 TCP10L2B9ZVM9 353 aa17.54■□□□□ 0.4
VPS29-201ENST00000360579 GNRH1P01148 92 aa17.54■□□□□ 0.4
VPS29-201ENST00000360579 HOOK2Q96ED9 719 aa17.54■□□□□ 0.4
VPS29-201ENST00000360579 OTUD5Q96G74 571 aa17.54■□□□□ 0.4
VPS29-201ENST00000360579 ZNF594Q96JF6 807 aaPredicted RBP17.54■□□□□ 0.4
VPS29-201ENST00000360579 TMEM39BQ9GZU3 492 aa17.54■□□□□ 0.4
VPS29-201ENST00000360579 A0A1B0GUL6 1792 aa17.53■□□□□ 0.4
VPS29-201ENST00000360579 SPDYE5A6NIY4 337 aa17.53■□□□□ 0.4
VPS29-201ENST00000360579 GRM8O00222 908 aa17.53■□□□□ 0.4
VPS29-201ENST00000360579 TLR2O60603 784 aa17.53■□□□□ 0.4
VPS29-201ENST00000360579 CETPP11597 493 aa17.53■□□□□ 0.4
VPS29-201ENST00000360579 CRKP46108 304 aa17.53■□□□□ 0.4
VPS29-201ENST00000360579 PRMT2P55345 433 aa17.53■□□□□ 0.4
VPS29-201ENST00000360579 FAM43AQ8N2R8 423 aa17.53■□□□□ 0.4
VPS29-201ENST00000360579 COLQQ9Y215 455 aaPredicted RBP17.53■□□□□ 0.4
VPS29-201ENST00000360579 OTOFQ9HC10 1997 aa17.53■□□□□ 0.4
VPS29-201ENST00000360579 FANCIQ9NVI1 1328 aa17.52■□□□□ 0.4
VPS29-201ENST00000360579 VAMP4O75379 141 aa17.52■□□□□ 0.4
VPS29-201ENST00000360579 GYG1P46976 350 aa17.52■□□□□ 0.4
VPS29-201ENST00000360579 HDLBPQ00341 1268 aaKnown RBP17.52■□□□□ 0.4
VPS29-201ENST00000360579 POTEHQ6S545 545 aa17.52■□□□□ 0.4
VPS29-201ENST00000360579 ERO1BQ86YB8 467 aa17.52■□□□□ 0.4
VPS29-201ENST00000360579 CDAN1Q8IWY9 1227 aa17.52■□□□□ 0.4
VPS29-201ENST00000360579 TBC1D22AQ8WUA7 517 aa17.52■□□□□ 0.4
VPS29-201ENST00000360579 FAM84BQ96KN1 310 aaPredicted RBP17.52■□□□□ 0.4
VPS29-201ENST00000360579 C9orf78Q9NZ63 289 aaPredicted RBP17.52■□□□□ 0.4
VPS29-201ENST00000360579 F6X3S4 739 aa17.51■□□□□ 0.39
VPS29-201ENST00000360579 LACTBP83111 547 aaPredicted RBP17.51■□□□□ 0.39
VPS29-201ENST00000360579 SNAPC2Q13487 334 aa17.51■□□□□ 0.39
VPS29-201ENST00000360579 EPHA10Q5JZY3 1008 aa17.51■□□□□ 0.39
VPS29-201ENST00000360579 VPS37DQ86XT2 251 aa17.51■□□□□ 0.39
VPS29-201ENST00000360579 TMOD2Q9NZR1 351 aa17.51■□□□□ 0.39
VPS29-201ENST00000360579 CACNA1FO60840 1977 aa17.51■□□□□ 0.39
VPS29-201ENST00000360579 MROH5Q6ZUA9 1318 aa17.5■□□□□ 0.39
VPS29-201ENST00000360579 TEKT1Q969V4 418 aa17.5■□□□□ 0.39
VPS29-201ENST00000360579 ALDH1L1O75891 902 aa17.49■□□□□ 0.39
VPS29-201ENST00000360579 PPIL2Q13356 520 aa17.49■□□□□ 0.39
VPS29-201ENST00000360579 FKBP1CQ5VVH2 108 aa17.49■□□□□ 0.39
VPS29-201ENST00000360579 FAM83AQ86UY5 434 aa17.49■□□□□ 0.39
VPS29-201ENST00000360579 WDR63Q8IWG1 891 aa17.49■□□□□ 0.39
VPS29-201ENST00000360579 SH3TC2Q8TF17 1288 aa17.49■□□□□ 0.39
VPS29-201ENST00000360579 WRNIP1Q96S55 665 aa17.49■□□□□ 0.39
VPS29-201ENST00000360579 MRIQ9BWK5 157 aa17.49■□□□□ 0.39
VPS29-201ENST00000360579 SNCAIPQ9Y6H5 919 aa17.49■□□□□ 0.39
VPS29-201ENST00000360579 BTBD19C9JJ37 291 aa17.48■□□□□ 0.39
VPS29-201ENST00000360579 H0YGN5 161 aa17.48■□□□□ 0.39
VPS29-201ENST00000360579 FRAT2O75474 233 aaPredicted RBP17.48■□□□□ 0.39
VPS29-201ENST00000360579 CAVIN4Q5BKX8 364 aa17.48■□□□□ 0.39
VPS29-201ENST00000360579 DCAF15Q66K64 600 aa17.48■□□□□ 0.39
VPS29-201ENST00000360579 MAST3O60307 1309 aa17.47■□□□□ 0.39
VPS29-201ENST00000360579 CEP290O15078 2479 aa17.47■□□□□ 0.39
VPS29-201ENST00000360579 ARAP2Q8WZ64 1704 aa17.47■□□□□ 0.39
VPS29-201ENST00000360579 IRF6O14896 467 aa17.47■□□□□ 0.39
VPS29-201ENST00000360579 MYCP01106 439 aaPredicted RBP17.47■□□□□ 0.39
VPS29-201ENST00000360579 HOXD10P28358 340 aa17.47■□□□□ 0.39
VPS29-201ENST00000360579 EXOSC9Q06265 439 aaKnown RBP17.47■□□□□ 0.39
VPS29-201ENST00000360579 FBXO33Q7Z6M2 555 aa17.47■□□□□ 0.39
VPS29-201ENST00000360579 NKX2-3Q8TAU0 364 aa17.47■□□□□ 0.39
VPS29-201ENST00000360579 ZDHHC15Q96MV8 337 aa17.47■□□□□ 0.39
VPS29-201ENST00000360579 ARHGAP39Q9C0H5 1083 aa17.47■□□□□ 0.39
VPS29-201ENST00000360579 SRCIN1Q9C0H9 1055 aa17.47■□□□□ 0.39
VPS29-201ENST00000360579 SUGT1Q9Y2Z0 365 aa17.47■□□□□ 0.39
VPS29-201ENST00000360579 PPATQ06203 517 aa17.46■□□□□ 0.39
VPS29-201ENST00000360579 CHAF1AQ13111 956 aaPredicted RBP17.46■□□□□ 0.39
VPS29-201ENST00000360579 ZKSCAN4Q969J2 545 aaPredicted RBP17.46■□□□□ 0.39
VPS29-201ENST00000360579 RIPOR2Q9Y4F9 1068 aa17.46■□□□□ 0.39
VPS29-201ENST00000360579 SZT2Q5T011 3432 aa17.46■□□□□ 0.38
VPS29-201ENST00000360579 RPAP1Q9BWH6 1393 aaPredicted RBP17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms