RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 PALLDQ8WX93 1383 aa14.07□□□□□ -0.16
CLIP3-201ENST00000360535 OVOS2A0A0G2JMS6 1433 aa14.06□□□□□ -0.16
CLIP3-201ENST00000360535 SNAP23O00161 211 aa14.06□□□□□ -0.16
CLIP3-201ENST00000360535 TPM4P67936 248 aa14.06□□□□□ -0.16
CLIP3-201ENST00000360535 LAMA4Q16363 1823 aa14.06□□□□□ -0.16
CLIP3-201ENST00000360535 CFAP100Q494V2 611 aa14.06□□□□□ -0.16
CLIP3-201ENST00000360535 SALL1Q9NSC2 1324 aa14.06□□□□□ -0.16
CLIP3-201ENST00000360535 HPS5Q9UPZ3 1129 aa14.06□□□□□ -0.16
CLIP3-201ENST00000360535 SYKP43405 635 aa14.06□□□□□ -0.16
CLIP3-201ENST00000360535 CCDC191Q8NCU4 936 aa14.06□□□□□ -0.16
CLIP3-201ENST00000360535 CGNQ9P2M7 1197 aaKnown RBP14.06□□□□□ -0.16
CLIP3-201ENST00000360535 FOXP2O15409 715 aa14.06□□□□□ -0.16
CLIP3-201ENST00000360535 NEMFO60524 1076 aa14.06□□□□□ -0.16
CLIP3-201ENST00000360535 METAP2P50579 478 aaKnown RBP eCLIP14.06□□□□□ -0.16
CLIP3-201ENST00000360535 ARMCX5Q6P1M9 558 aa14.06□□□□□ -0.16
CLIP3-201ENST00000360535 PDILTQ8N807 584 aa14.06□□□□□ -0.16
CLIP3-201ENST00000360535 LRRN4CLQ8ND94 238 aa14.06□□□□□ -0.16
CLIP3-201ENST00000360535 AGXT2Q9BYV1 514 aa14.06□□□□□ -0.16
CLIP3-201ENST00000360535 ERCC6LQ2NKX8 1250 aa14.05□□□□□ -0.16
CLIP3-201ENST00000360535 CMTR1Q8N1G2 835 aaKnown RBP14.05□□□□□ -0.16
CLIP3-201ENST00000360535 ZKSCAN3Q9BRR0 538 aa14.05□□□□□ -0.16
CLIP3-201ENST00000360535 KMT5BQ4FZB7 885 aa14.05□□□□□ -0.16
CLIP3-201ENST00000360535 MROH7-TTC4A0A0A0MT08 1334 aa14.05□□□□□ -0.16
CLIP3-201ENST00000360535 RBM6P78332 1123 aaKnown RBP14.05□□□□□ -0.16
CLIP3-201ENST00000360535 FANCCQ00597 558 aa14.05□□□□□ -0.16
CLIP3-201ENST00000360535 LRRFIP1Q32MZ4 808 aaKnown RBP14.05□□□□□ -0.16
CLIP3-201ENST00000360535 KLHL34Q8N239 644 aa14.05□□□□□ -0.16
CLIP3-201ENST00000360535 APPBP2Q92624 585 aa14.05□□□□□ -0.16
CLIP3-201ENST00000360535 KIF23Q02241 960 aaPredicted RBP14.04□□□□□ -0.16
CLIP3-201ENST00000360535 E4F1Q66K89 784 aaPredicted RBP14.04□□□□□ -0.16
CLIP3-201ENST00000360535 CYB5R4Q7L1T6 521 aa14.04□□□□□ -0.16
CLIP3-201ENST00000360535 VPS37DQ86XT2 251 aa14.04□□□□□ -0.16
CLIP3-201ENST00000360535 MB21D2Q8IYB1 491 aaPredicted RBP14.04□□□□□ -0.16
CLIP3-201ENST00000360535 DPF2Q92785 391 aa14.04□□□□□ -0.16
CLIP3-201ENST00000360535 OGFRQ9NZT2 677 aa14.04□□□□□ -0.16
CLIP3-201ENST00000360535 DNAI1Q9UI46 699 aa14.04□□□□□ -0.16
CLIP3-201ENST00000360535 AKAP2Q9Y2D5 859 aa14.04□□□□□ -0.16
CLIP3-201ENST00000360535 C1orf167Q5SNV9 1468 aa14.04□□□□□ -0.16
CLIP3-201ENST00000360535 NRDCO43847 1150 aa14.04□□□□□ -0.16
CLIP3-201ENST00000360535 UBASH3AP57075 661 aa14.04□□□□□ -0.16
CLIP3-201ENST00000360535 KRT40Q6A162 431 aa14.04□□□□□ -0.16
CLIP3-201ENST00000360535 FBXO38Q6PIJ6 1188 aa14.04□□□□□ -0.16
CLIP3-201ENST00000360535 ST7Q9NRC1 585 aa14.04□□□□□ -0.16
CLIP3-201ENST00000360535 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.04□□□□□ -0.16
CLIP3-201ENST00000360535 MCAMP43121 646 aa14.03□□□□□ -0.16
CLIP3-201ENST00000360535 GSDMDP57764 484 aa14.03□□□□□ -0.16
CLIP3-201ENST00000360535 ATL3Q6DD88 541 aa14.03□□□□□ -0.16
CLIP3-201ENST00000360535 NYAP1Q6ZVC0 841 aa14.03□□□□□ -0.16
CLIP3-201ENST00000360535 DNAJC10Q8IXB1 793 aa14.03□□□□□ -0.16
CLIP3-201ENST00000360535 PPP1R13BQ96KQ4 1090 aa14.03□□□□□ -0.16
CLIP3-201ENST00000360535 SLC26A6Q9BXS9 759 aa14.03□□□□□ -0.16
CLIP3-201ENST00000360535 SLU7O95391 586 aaKnown RBP14.03□□□□□ -0.16
CLIP3-201ENST00000360535 CDC27P30260 824 aa14.03□□□□□ -0.16
CLIP3-201ENST00000360535 NLRP12P59046 1061 aa14.03□□□□□ -0.16
CLIP3-201ENST00000360535 CTDSPL2Q05D32 466 aa14.03□□□□□ -0.16
CLIP3-201ENST00000360535 TRIM29Q14134 588 aa14.03□□□□□ -0.16
CLIP3-201ENST00000360535 TBC1D10CQ8IV04 446 aa14.03□□□□□ -0.16
CLIP3-201ENST00000360535 RFX7Q2KHR2 1363 aa14.03□□□□□ -0.16
CLIP3-201ENST00000360535 FOXN1O15353 648 aa14.03□□□□□ -0.16
CLIP3-201ENST00000360535 EVA1CP58658 441 aa14.03□□□□□ -0.16
CLIP3-201ENST00000360535 UTP14AQ9BVJ6 771 aaKnown RBP14.03□□□□□ -0.16
CLIP3-201ENST00000360535 GREM2Q9H772 168 aa14.03□□□□□ -0.16
CLIP3-201ENST00000360535 GPR108Q9NPR9 543 aa14.03□□□□□ -0.16
CLIP3-201ENST00000360535 USP54Q70EL1 1684 aa14.02□□□□□ -0.16
CLIP3-201ENST00000360535 A0A1W2PQ27 194 aa14.02□□□□□ -0.16
CLIP3-201ENST00000360535 A0A1W2PQ64 194 aa14.02□□□□□ -0.16
CLIP3-201ENST00000360535 A0A1W2PQD8 194 aa14.02□□□□□ -0.16
CLIP3-201ENST00000360535 POLR3EQ9NVU0 708 aa14.02□□□□□ -0.16
CLIP3-201ENST00000360535 TMEM232C9JQI7 657 aa14.02□□□□□ -0.17
CLIP3-201ENST00000360535 YEATS4O95619 227 aa14.02□□□□□ -0.17
CLIP3-201ENST00000360535 ITGA6P23229 1130 aa14.02□□□□□ -0.17
CLIP3-201ENST00000360535 ZNF827Q17R98 1081 aa14.02□□□□□ -0.17
CLIP3-201ENST00000360535 KIF6Q6ZMV9 814 aa14.02□□□□□ -0.17
CLIP3-201ENST00000360535 FEZ1Q99689 392 aa14.02□□□□□ -0.17
CLIP3-201ENST00000360535 ASAP1Q9ULH1 1129 aa14.02□□□□□ -0.17
CLIP3-201ENST00000360535 MRC1P22897 1456 aa14.02□□□□□ -0.17
CLIP3-201ENST00000360535 SIPA1L3O60292 1781 aaPredicted RBP14.02□□□□□ -0.17
CLIP3-201ENST00000360535 ERICH4A6NGS2 130 aa14.02□□□□□ -0.17
CLIP3-201ENST00000360535 GOLGA8AA7E2F4 631 aa14.02□□□□□ -0.17
CLIP3-201ENST00000360535 URI1O94763 535 aaPredicted RBP14.02□□□□□ -0.17
CLIP3-201ENST00000360535 CDK11BP21127 795 aaKnown RBP14.02□□□□□ -0.17
CLIP3-201ENST00000360535 TCIRG1Q13488 830 aa14.02□□□□□ -0.17
CLIP3-201ENST00000360535 AXDND1Q5T1B0 1012 aaPredicted RBP14.02□□□□□ -0.17
CLIP3-201ENST00000360535 CPLX2Q6PUV4 134 aaKnown RBP14.02□□□□□ -0.17
CLIP3-201ENST00000360535 BRAPQ7Z569 592 aa14.02□□□□□ -0.17
CLIP3-201ENST00000360535 CNNM3Q8NE01 707 aa14.02□□□□□ -0.17
CLIP3-201ENST00000360535 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.02□□□□□ -0.17
CLIP3-201ENST00000360535 ANGEL1Q9UNK9 670 aaKnown RBP14.02□□□□□ -0.17
CLIP3-201ENST00000360535 KCNJ14Q9UNX9 436 aa14.02□□□□□ -0.17
CLIP3-201ENST00000360535 SLIT3O75094 1523 aa14.01□□□□□ -0.17
CLIP3-201ENST00000360535 IARSP41252 1262 aaKnown RBP14.01□□□□□ -0.17
CLIP3-201ENST00000360535 HLFQ16534 295 aa14.01□□□□□ -0.17
CLIP3-201ENST00000360535 TMEM67Q5HYA8 995 aa14.01□□□□□ -0.17
CLIP3-201ENST00000360535 AIDAQ96BJ3 306 aa14.01□□□□□ -0.17
CLIP3-201ENST00000360535 SCN11AQ9UI33 1791 aa14.01□□□□□ -0.17
CLIP3-201ENST00000360535 ZNF532Q9HCE3 1301 aa14.01□□□□□ -0.17
CLIP3-201ENST00000360535 ZFYP08048 801 aaPredicted RBP14.01□□□□□ -0.17
CLIP3-201ENST00000360535 ZNF397Q8NF99 534 aaPredicted RBP14.01□□□□□ -0.17
CLIP3-201ENST00000360535 NUP133Q8WUM0 1156 aa14.01□□□□□ -0.17
CLIP3-201ENST00000360535 CHMP4CQ96CF2 233 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms