RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 MIGA1Q8NAN2 632 aa22.27■■□□□ 1.16
CLN3-206ENST00000360019 STRBPQ96SI9 672 aaKnown RBP22.27■■□□□ 1.16
CLN3-206ENST00000360019 TBC1D2Q9BYX2 928 aa22.27■■□□□ 1.16
CLN3-206ENST00000360019 FAM205AQ6ZU69 1335 aa22.27■■□□□ 1.16
CLN3-206ENST00000360019 MAST2Q6P0Q8 1798 aa22.27■■□□□ 1.16
CLN3-206ENST00000360019 CD2BP2O95400 341 aaKnown RBP22.27■■□□□ 1.15
CLN3-206ENST00000360019 GRIPAP1Q4V328 841 aa22.27■■□□□ 1.15
CLN3-206ENST00000360019 SPTY2D1Q68D10 685 aaPredicted RBP22.27■■□□□ 1.15
CLN3-206ENST00000360019 ARMT1Q9H993 441 aa22.27■■□□□ 1.15
CLN3-206ENST00000360019 TAF6LQ9Y6J9 622 aa22.27■■□□□ 1.15
CLN3-206ENST00000360019 SLC4A3P48751 1232 aa22.26■■□□□ 1.15
CLN3-206ENST00000360019 GTF2IP78347 998 aa22.26■■□□□ 1.15
CLN3-206ENST00000360019 RTKN2Q8IZC4 609 aa22.26■■□□□ 1.15
CLN3-206ENST00000360019 LDHBP07195 334 aaKnown RBP22.25■■□□□ 1.15
CLN3-206ENST00000360019 LCORLQ8N3X6 602 aa22.25■■□□□ 1.15
CLN3-206ENST00000360019 SNX21Q969T3 373 aa22.25■■□□□ 1.15
CLN3-206ENST00000360019 DBNDD1Q9H9R9 158 aa22.25■■□□□ 1.15
CLN3-206ENST00000360019 CYP21A2P08686 494 aa22.24■■□□□ 1.15
CLN3-206ENST00000360019 ZKSCAN1P17029 563 aaPredicted RBP22.24■■□□□ 1.15
CLN3-206ENST00000360019 KIAA2012Q0VF49 1180 aa22.24■■□□□ 1.15
CLN3-206ENST00000360019 AOC3Q16853 763 aa22.24■■□□□ 1.15
CLN3-206ENST00000360019 DALRD3Q5D0E6 543 aaKnown RBP22.24■■□□□ 1.15
CLN3-206ENST00000360019 RNF20Q5VTR2 975 aa22.24■■□□□ 1.15
CLN3-206ENST00000360019 SUPT20HQ8NEM7 779 aa22.24■■□□□ 1.15
CLN3-206ENST00000360019 PSMD1Q99460 953 aa22.24■■□□□ 1.15
CLN3-206ENST00000360019 SPON1Q9HCB6 807 aa22.24■■□□□ 1.15
CLN3-206ENST00000360019 CCDC88AQ3V6T2 1871 aa22.24■■□□□ 1.15
CLN3-206ENST00000360019 IGSF3O75054 1194 aa22.24■■□□□ 1.15
CLN3-206ENST00000360019 BECN1Q14457 450 aa22.24■■□□□ 1.15
CLN3-206ENST00000360019 ADCK5Q3MIX3 580 aa22.24■■□□□ 1.15
CLN3-206ENST00000360019 MFSD14BQ5SR56 506 aa22.24■■□□□ 1.15
CLN3-206ENST00000360019 DZIP1Q86YF9 867 aaKnown RBP22.24■■□□□ 1.15
CLN3-206ENST00000360019 RIOK1Q9BRS2 568 aaKnown RBP22.24■■□□□ 1.15
CLN3-206ENST00000360019 TTLL5Q6EMB2 1281 aa22.23■■□□□ 1.15
CLN3-206ENST00000360019 TMED8Q6PL24 325 aaPredicted RBP22.23■■□□□ 1.15
CLN3-206ENST00000360019 PODNQ7Z5L7 613 aa22.23■■□□□ 1.15
CLN3-206ENST00000360019 TBC1D22AQ8WUA7 517 aa22.23■■□□□ 1.15
CLN3-206ENST00000360019 UPF3BQ9BZI7 483 aaKnown RBP22.23■■□□□ 1.15
CLN3-206ENST00000360019 MAGEB6P1A0A0J9YX57 407 aa22.22■■□□□ 1.15
CLN3-206ENST00000360019 G3V3G9 751 aa22.22■■□□□ 1.15
CLN3-206ENST00000360019 FGAP02671 866 aa22.22■■□□□ 1.15
CLN3-206ENST00000360019 TSGA10IPQ3SY00 556 aa22.22■■□□□ 1.15
CLN3-206ENST00000360019 DCAF8Q5TAQ9 597 aa22.22■■□□□ 1.15
CLN3-206ENST00000360019 NEK4P51957 841 aa22.22■■□□□ 1.15
CLN3-206ENST00000360019 SOGA3Q5TF21 947 aa22.22■■□□□ 1.15
CLN3-206ENST00000360019 NLGN2Q8NFZ4 835 aa22.22■■□□□ 1.15
CLN3-206ENST00000360019 KCNQ5Q9NR82 932 aa22.22■■□□□ 1.15
CLN3-206ENST00000360019 RPAP1Q9BWH6 1393 aaPredicted RBP22.21■■□□□ 1.15
CLN3-206ENST00000360019 PPIP5K2O43314 1243 aa22.21■■□□□ 1.15
CLN3-206ENST00000360019 PRKAB2O43741 272 aa22.21■■□□□ 1.15
CLN3-206ENST00000360019 ECE2O60344 883 aa22.21■■□□□ 1.15
CLN3-206ENST00000360019 DYNLL1P63167 89 aaKnown RBP22.21■■□□□ 1.15
CLN3-206ENST00000360019 CERS5Q8N5B7 392 aa22.21■■□□□ 1.15
CLN3-206ENST00000360019 JAKMIP1Q96N16 626 aaKnown RBP22.21■■□□□ 1.15
CLN3-206ENST00000360019 EPB41L4AQ9HCS5 686 aaPredicted RBP22.21■■□□□ 1.15
CLN3-206ENST00000360019 SCN9AQ15858 1988 aa22.21■■□□□ 1.15
CLN3-206ENST00000360019 PATL2C9JE40 543 aaKnown RBP22.2■■□□□ 1.14
CLN3-206ENST00000360019 DIXDC1Q155Q3 683 aa22.2■■□□□ 1.14
CLN3-206ENST00000360019 HSCBQ8IWL3 235 aa22.2■■□□□ 1.14
CLN3-206ENST00000360019 FBXW7Q969H0 707 aa22.2■■□□□ 1.14
CLN3-206ENST00000360019 GSG1L2A8MUP6 293 aa22.2■■□□□ 1.14
CLN3-206ENST00000360019 ST18O60284 1047 aa22.2■■□□□ 1.14
CLN3-206ENST00000360019 APPP05067 770 aa22.2■■□□□ 1.14
CLN3-206ENST00000360019 GNAT2P19087 354 aa22.2■■□□□ 1.14
CLN3-206ENST00000360019 COL9A3Q14050 684 aaPredicted RBP22.2■■□□□ 1.14
CLN3-206ENST00000360019 MXD3Q9BW11 206 aa22.2■■□□□ 1.14
CLN3-206ENST00000360019 TM6SF1Q9BZW5 370 aa22.2■■□□□ 1.14
CLN3-206ENST00000360019 CTNNA3Q9UI47 895 aa22.2■■□□□ 1.14
CLN3-206ENST00000360019 SLC4A4Q9Y6R1 1079 aa22.2■■□□□ 1.14
CLN3-206ENST00000360019 CASTP20810 708 aaKnown RBP22.19■■□□□ 1.14
CLN3-206ENST00000360019 ZSWIM6Q9HCJ5 1215 aa22.19■■□□□ 1.14
CLN3-206ENST00000360019 ZNF277Q9NRM2 450 aaPredicted RBP22.19■■□□□ 1.14
CLN3-206ENST00000360019 AATFQ9NY61 560 aaKnown RBP eCLIP22.19■■□□□ 1.14
CLN3-206ENST00000360019 CPA1P15085 419 aa22.18■■□□□ 1.14
CLN3-206ENST00000360019 STOX1Q6ZVD7 989 aa22.18■■□□□ 1.14
CLN3-206ENST00000360019 IFNL3Q8IZI9 196 aa22.18■■□□□ 1.14
CLN3-206ENST00000360019 ZNF646O15015 1829 aaPredicted RBP22.18■■□□□ 1.14
CLN3-206ENST00000360019 COL4A5P29400 1685 aa22.18■■□□□ 1.14
CLN3-206ENST00000360019 GSTO1P78417 241 aa22.17■■□□□ 1.14
CLN3-206ENST00000360019 ALX1Q15699 326 aa22.17■■□□□ 1.14
CLN3-206ENST00000360019 DAXXQ9UER7 740 aaPredicted RBP22.17■■□□□ 1.14
CLN3-206ENST00000360019 BCS1LQ9Y276 419 aa22.17■■□□□ 1.14
CLN3-206ENST00000360019 SUGT1Q9Y2Z0 365 aa22.17■■□□□ 1.14
CLN3-206ENST00000360019 ZMYM6O95789 1325 aa22.17■■□□□ 1.14
CLN3-206ENST00000360019 KRT32Q14532 448 aa22.17■■□□□ 1.14
CLN3-206ENST00000360019 IMMTQ16891 758 aaKnown RBP22.17■■□□□ 1.14
CLN3-206ENST00000360019 STRIP1Q5VSL9 837 aa22.17■■□□□ 1.14
CLN3-206ENST00000360019 SDR42E1Q8WUS8 393 aa22.17■■□□□ 1.14
CLN3-206ENST00000360019 MROH7-TTC4A0A0A0MT08 1334 aa22.16■■□□□ 1.14
CLN3-206ENST00000360019 FER1L6Q2WGJ9 1857 aa22.16■■□□□ 1.14
CLN3-206ENST00000360019 YDJCA8MPS7 323 aa22.16■■□□□ 1.14
CLN3-206ENST00000360019 HAND2P61296 217 aa22.16■■□□□ 1.14
CLN3-206ENST00000360019 DACT2Q5SW24 774 aa22.16■■□□□ 1.14
CLN3-206ENST00000360019 TTC14Q96N46 770 aa22.16■■□□□ 1.14
CLN3-206ENST00000360019 MYH2Q9UKX2 1941 aa22.16■■□□□ 1.14
CLN3-206ENST00000360019 K7ELQ4 463 aaPredicted RBP22.15■■□□□ 1.14
CLN3-206ENST00000360019 PSMA5P28066 241 aa22.15■■□□□ 1.14
CLN3-206ENST00000360019 RUFY3Q7L099 469 aa22.15■■□□□ 1.14
CLN3-206ENST00000360019 LARGE2Q8N3Y3 721 aa22.15■■□□□ 1.14
CLN3-206ENST00000360019 NAPBQ9H115 298 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 256.6 ms