RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 ARHGAP45Q92619 1136 aa20.7■□□□□ 0.9
SHANK1-202ENST00000359082 PCDHB15Q9Y5E8 787 aa20.7■□□□□ 0.9
SHANK1-202ENST00000359082 NBPF11Q86T75 865 aa20.69■□□□□ 0.9
SHANK1-202ENST00000359082 RUFY3Q7L099 469 aa20.69■□□□□ 0.9
SHANK1-202ENST00000359082 CCDC65Q8IXS2 484 aa20.69■□□□□ 0.9
SHANK1-202ENST00000359082 CCT6AP40227 531 aaKnown RBP20.69■□□□□ 0.9
SHANK1-202ENST00000359082 MTRF1LQ9UGC7 380 aaKnown RBP20.69■□□□□ 0.9
SHANK1-202ENST00000359082 ALDH1L1O75891 902 aa20.69■□□□□ 0.9
SHANK1-202ENST00000359082 HARSP12081 509 aaKnown RBP20.69■□□□□ 0.9
SHANK1-202ENST00000359082 ZNF174Q15697 407 aa20.69■□□□□ 0.9
SHANK1-202ENST00000359082 KRT9P35527 623 aa20.69■□□□□ 0.9
SHANK1-202ENST00000359082 NOL3O60936 208 aaKnown RBP20.68■□□□□ 0.9
SHANK1-202ENST00000359082 AKAP4Q5JQC9 854 aa20.68■□□□□ 0.9
SHANK1-202ENST00000359082 TRIM7Q9C029 511 aa20.68■□□□□ 0.9
SHANK1-202ENST00000359082 AGTPBP1Q9UPW5 1226 aa20.68■□□□□ 0.9
SHANK1-202ENST00000359082 BACH1O14867 736 aa20.68■□□□□ 0.9
SHANK1-202ENST00000359082 URB2Q14146 1524 aaKnown RBP20.68■□□□□ 0.9
SHANK1-202ENST00000359082 TEX14Q8IWB6 1497 aa20.68■□□□□ 0.9
SHANK1-202ENST00000359082 PPIP5K1Q6PFW1 1433 aa20.68■□□□□ 0.9
SHANK1-202ENST00000359082 CCDC14Q49A88 953 aa20.68■□□□□ 0.9
SHANK1-202ENST00000359082 PPP1R21Q6ZMI0 780 aa20.68■□□□□ 0.9
SHANK1-202ENST00000359082 SAMD15Q9P1V8 674 aa20.68■□□□□ 0.9
SHANK1-202ENST00000359082 VWA3AA6NCI4 1184 aa20.67■□□□□ 0.9
SHANK1-202ENST00000359082 PARP1P09874 1014 aaKnown RBP20.67■□□□□ 0.9
SHANK1-202ENST00000359082 MRRFQ96E11 262 aaKnown RBP20.67■□□□□ 0.9
SHANK1-202ENST00000359082 RALGAPBQ86X10 1494 aa20.67■□□□□ 0.9
SHANK1-202ENST00000359082 TNRQ92752 1358 aa20.67■□□□□ 0.9
SHANK1-202ENST00000359082 CWF19L2Q2TBE0 894 aaKnown RBP20.67■□□□□ 0.9
SHANK1-202ENST00000359082 C14orf93Q9H972 538 aaKnown RBP20.67■□□□□ 0.9
SHANK1-202ENST00000359082 FRMD4BQ9Y2L6 1034 aa20.67■□□□□ 0.9
SHANK1-202ENST00000359082 B4DLN1 442 aa20.67■□□□□ 0.9
SHANK1-202ENST00000359082 IRS4O14654 1257 aaPredicted RBP20.67■□□□□ 0.9
SHANK1-202ENST00000359082 XRCC6P12956 609 aaKnown RBP eCLIP20.67■□□□□ 0.9
SHANK1-202ENST00000359082 MRPL12P52815 198 aaKnown RBP20.67■□□□□ 0.9
SHANK1-202ENST00000359082 CHMP2AO43633 222 aa20.66■□□□□ 0.9
SHANK1-202ENST00000359082 TNNC1P63316 161 aa20.66■□□□□ 0.9
SHANK1-202ENST00000359082 CRCPO75575 148 aa20.66■□□□□ 0.9
SHANK1-202ENST00000359082 KIAA1524Q8TCG1 905 aa20.66■□□□□ 0.9
SHANK1-202ENST00000359082 RBM28Q9NW13 759 aaKnown RBP20.66■□□□□ 0.9
SHANK1-202ENST00000359082 CADPS2Q86UW7 1296 aa20.66■□□□□ 0.9
SHANK1-202ENST00000359082 LDHBP07195 334 aaKnown RBP20.66■□□□□ 0.9
SHANK1-202ENST00000359082 GNA11P29992 359 aa20.66■□□□□ 0.9
SHANK1-202ENST00000359082 SETDB1Q15047 1291 aa20.66■□□□□ 0.9
SHANK1-202ENST00000359082 LRRC59Q96AG4 307 aaKnown RBP20.66■□□□□ 0.9
SHANK1-202ENST00000359082 MTUS1Q9ULD2 1270 aa20.66■□□□□ 0.9
SHANK1-202ENST00000359082 SV2BQ7L1I2 683 aa20.65■□□□□ 0.9
SHANK1-202ENST00000359082 PARP3Q9Y6F1 533 aa20.65■□□□□ 0.9
SHANK1-202ENST00000359082 LUC7L2Q9Y383 392 aaKnown RBP20.65■□□□□ 0.9
SHANK1-202ENST00000359082 EPB41P11171 864 aaKnown RBP20.65■□□□□ 0.9
SHANK1-202ENST00000359082 LETM2Q2VYF4 491 aa20.65■□□□□ 0.9
SHANK1-202ENST00000359082 CCDC122Q5T0U0 273 aa20.65■□□□□ 0.9
SHANK1-202ENST00000359082 GPCPD1Q9NPB8 672 aa20.65■□□□□ 0.9
SHANK1-202ENST00000359082 TTC41PQ6P2S7 1318 aa20.65■□□□□ 0.9
SHANK1-202ENST00000359082 GAS8O95995 478 aa20.65■□□□□ 0.9
SHANK1-202ENST00000359082 CALCOCO2Q13137 446 aa20.65■□□□□ 0.9
SHANK1-202ENST00000359082 LEO1Q8WVC0 666 aaPredicted RBP20.65■□□□□ 0.9
SHANK1-202ENST00000359082 C8orf37Q96NL8 207 aa20.65■□□□□ 0.9
SHANK1-202ENST00000359082 VAV2P52735 878 aa20.64■□□□□ 0.9
SHANK1-202ENST00000359082 NSFL1CQ9UNZ2 370 aaKnown RBP20.64■□□□□ 0.9
SHANK1-202ENST00000359082 ZKSCAN5Q9Y2L8 839 aa20.64■□□□□ 0.9
SHANK1-202ENST00000359082 ALDH3A1P30838 453 aa20.64■□□□□ 0.89
SHANK1-202ENST00000359082 BIRC3Q13489 604 aa20.64■□□□□ 0.89
SHANK1-202ENST00000359082 NOC4LQ9BVI4 516 aaKnown RBP20.64■□□□□ 0.89
SHANK1-202ENST00000359082 EBAG9O00559 213 aa20.64■□□□□ 0.89
SHANK1-202ENST00000359082 RAB3GAP1Q15042 981 aa20.64■□□□□ 0.89
SHANK1-202ENST00000359082 FAM76AQ8TAV0 307 aa20.64■□□□□ 0.89
SHANK1-202ENST00000359082 PLCG2P16885 1265 aa20.64■□□□□ 0.89
SHANK1-202ENST00000359082 GEN1Q17RS7 908 aa20.64■□□□□ 0.89
SHANK1-202ENST00000359082 WDR44Q5JSH3 913 aa20.64■□□□□ 0.89
SHANK1-202ENST00000359082 BRAPQ7Z569 592 aa20.64■□□□□ 0.89
SHANK1-202ENST00000359082 A0A1B0GVL5 298 aa20.63■□□□□ 0.89
SHANK1-202ENST00000359082 ZC3H12CQ9C0D7 883 aaKnown RBP20.63■□□□□ 0.89
SHANK1-202ENST00000359082 AKR1B15C9JRZ8 316 aaPredicted RBP20.63■□□□□ 0.89
SHANK1-202ENST00000359082 E7EVH7 732 aa20.63■□□□□ 0.89
SHANK1-202ENST00000359082 CCT6BQ92526 530 aa20.63■□□□□ 0.89
SHANK1-202ENST00000359082 BICC1Q9H694 974 aaKnown RBP20.63■□□□□ 0.89
SHANK1-202ENST00000359082 MSH6P52701 1360 aa20.63■□□□□ 0.89
SHANK1-202ENST00000359082 ERCC5P28715 1186 aaPredicted RBP20.63■□□□□ 0.89
SHANK1-202ENST00000359082 TTC31Q49AM3 519 aaPredicted RBP20.63■□□□□ 0.89
SHANK1-202ENST00000359082 SNX21Q969T3 373 aa20.63■□□□□ 0.89
SHANK1-202ENST00000359082 KIFC2Q96AC6 838 aa20.63■□□□□ 0.89
SHANK1-202ENST00000359082 FAM160A1Q05DH4 1040 aa20.63■□□□□ 0.89
SHANK1-202ENST00000359082 RNASE9P60153 205 aaKnown RBP20.63■□□□□ 0.89
SHANK1-202ENST00000359082 MTHFSDQ2M296 383 aaKnown RBP20.63■□□□□ 0.89
SHANK1-202ENST00000359082 NFATC2IPQ8NCF5 419 aa20.63■□□□□ 0.89
SHANK1-202ENST00000359082 BAG1Q99933 345 aaPredicted RBP20.63■□□□□ 0.89
SHANK1-202ENST00000359082 RNF34Q969K3 372 aa20.62■□□□□ 0.89
SHANK1-202ENST00000359082 TUBB4AP04350 444 aa20.62■□□□□ 0.89
SHANK1-202ENST00000359082 FNBP1Q96RU3 617 aa20.62■□□□□ 0.89
SHANK1-202ENST00000359082 TNNQ9UQP3 1299 aa20.62■□□□□ 0.89
SHANK1-202ENST00000359082 ASXL1Q8IXJ9 1541 aa20.62■□□□□ 0.89
SHANK1-202ENST00000359082 KDM5BQ9UGL1 1544 aa20.62■□□□□ 0.89
SHANK1-202ENST00000359082 CCNT1O60563 726 aaKnown RBP20.62■□□□□ 0.89
SHANK1-202ENST00000359082 JAKMIP2Q96AA8 810 aa20.62■□□□□ 0.89
SHANK1-202ENST00000359082 CIB2O75838 187 aa20.62■□□□□ 0.89
SHANK1-202ENST00000359082 TRAF5O00463 557 aa20.62■□□□□ 0.89
SHANK1-202ENST00000359082 DHX32Q7L7V1 743 aaKnown RBP20.62■□□□□ 0.89
SHANK1-202ENST00000359082 IQUBQ8NA54 791 aa20.62■□□□□ 0.89
SHANK1-202ENST00000359082 BIVM-ERCC5R4GMW8 1640 aa20.62■□□□□ 0.89
SHANK1-202ENST00000359082 CEP85Q6P2H3 762 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms