RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 GOLIM4O00461 696 aa26.99■■□□□ 1.91
SHMT1-203ENST00000354098 TBC1D10BQ4KMP7 808 aaPredicted RBP26.99■■□□□ 1.91
SHMT1-203ENST00000354098 SUGT1Q9Y2Z0 365 aa26.99■■□□□ 1.91
SHMT1-203ENST00000354098 SCN4AP35499 1836 aa26.99■■□□□ 1.91
SHMT1-203ENST00000354098 TRPM4Q8TD43 1214 aa26.98■■□□□ 1.91
SHMT1-203ENST00000354098 MYOZ2Q9NPC6 264 aa26.98■■□□□ 1.91
SHMT1-203ENST00000354098 ADARB2Q9NS39 739 aaKnown RBP26.98■■□□□ 1.91
SHMT1-203ENST00000354098 PCDHAC2Q9Y5I4 1007 aa26.98■■□□□ 1.91
SHMT1-203ENST00000354098 ERC2O15083 957 aa26.98■■□□□ 1.91
SHMT1-203ENST00000354098 MAP4K4O95819 1239 aaPredicted RBP26.98■■□□□ 1.91
SHMT1-203ENST00000354098 ERICH6Q7L0X2 663 aa26.98■■□□□ 1.91
SHMT1-203ENST00000354098 PAG1Q9NWQ8 432 aa26.98■■□□□ 1.91
SHMT1-203ENST00000354098 LRP2BPQ9P2M1 347 aa26.98■■□□□ 1.91
SHMT1-203ENST00000354098 HDAC9Q9UKV0 1011 aa26.98■■□□□ 1.91
SHMT1-203ENST00000354098 GLRX3O76003 335 aaKnown RBP26.97■■□□□ 1.91
SHMT1-203ENST00000354098 HIRAP54198 1017 aaPredicted RBP26.97■■□□□ 1.91
SHMT1-203ENST00000354098 SPTY2D1Q68D10 685 aaPredicted RBP26.97■■□□□ 1.91
SHMT1-203ENST00000354098 ZNF384Q8TF68 577 aa26.97■■□□□ 1.91
SHMT1-203ENST00000354098 DIXDC1Q155Q3 683 aa26.96■■□□□ 1.91
SHMT1-203ENST00000354098 RAI14Q9P0K7 980 aa26.96■■□□□ 1.91
SHMT1-203ENST00000354098 MECOMQ03112 1051 aa26.95■■□□□ 1.91
SHMT1-203ENST00000354098 KIF3CO14782 793 aa26.95■■□□□ 1.9
SHMT1-203ENST00000354098 POTEIP0CG38 1075 aa26.95■■□□□ 1.9
SHMT1-203ENST00000354098 POTEJP0CG39 1038 aa26.95■■□□□ 1.9
SHMT1-203ENST00000354098 KIF4BQ2VIQ3 1234 aa26.95■■□□□ 1.9
SHMT1-203ENST00000354098 EAPPQ56P03 285 aaPredicted RBP26.95■■□□□ 1.9
SHMT1-203ENST00000354098 OSBPL3Q9H4L5 887 aa26.95■■□□□ 1.9
SHMT1-203ENST00000354098 IDH1O75874 414 aaKnown RBP26.94■■□□□ 1.9
SHMT1-203ENST00000354098 CRKP46108 304 aa26.94■■□□□ 1.9
SHMT1-203ENST00000354098 CFAP100Q494V2 611 aa26.94■■□□□ 1.9
SHMT1-203ENST00000354098 DZIP1Q86YF9 867 aaKnown RBP26.94■■□□□ 1.9
SHMT1-203ENST00000354098 NSUN4Q96CB9 384 aaKnown RBP26.94■■□□□ 1.9
SHMT1-203ENST00000354098 SERPINA10Q9UK55 444 aa26.94■■□□□ 1.9
SHMT1-203ENST00000354098 ADAMTSL1Q8N6G6 1762 aa26.93■■□□□ 1.9
SHMT1-203ENST00000354098 MAST3O60307 1309 aa26.93■■□□□ 1.9
SHMT1-203ENST00000354098 MYO5AQ9Y4I1 1855 aaKnown RBP26.93■■□□□ 1.9
SHMT1-203ENST00000354098 RBM5P52756 815 aaKnown RBP eCLIP26.93■■□□□ 1.9
SHMT1-203ENST00000354098 TTF1Q15361 905 aaPredicted RBP26.93■■□□□ 1.9
SHMT1-203ENST00000354098 USP50Q70EL3 339 aaPredicted RBP26.93■■□□□ 1.9
SHMT1-203ENST00000354098 AOX1Q06278 1338 aa26.93■■□□□ 1.9
SHMT1-203ENST00000354098 MMP14P50281 582 aa26.92■■□□□ 1.9
SHMT1-203ENST00000354098 NBPF9Q3BBW0 867 aa26.92■■□□□ 1.9
SHMT1-203ENST00000354098 HDLBPQ00341 1268 aaKnown RBP26.92■■□□□ 1.9
SHMT1-203ENST00000354098 DLGAP5Q15398 846 aa26.92■■□□□ 1.9
SHMT1-203ENST00000354098 PNMA8AQ86V59 439 aaPredicted RBP26.92■■□□□ 1.9
SHMT1-203ENST00000354098 TEKT1Q969V4 418 aa26.92■■□□□ 1.9
SHMT1-203ENST00000354098 PRMT6Q96LA8 375 aaPredicted RBP26.92■■□□□ 1.9
SHMT1-203ENST00000354098 MRIQ9BWK5 157 aa26.92■■□□□ 1.9
SHMT1-203ENST00000354098 ASTN2O75129 1339 aaPredicted RBP26.91■■□□□ 1.9
SHMT1-203ENST00000354098 WNT10BO00744 389 aa26.91■■□□□ 1.9
SHMT1-203ENST00000354098 ZBED3Q96IU2 234 aaPredicted RBP26.91■■□□□ 1.9
SHMT1-203ENST00000354098 HHIPL2Q6UWX4 724 aa26.9■■□□□ 1.9
SHMT1-203ENST00000354098 MTMR14Q8NCE2 650 aa26.9■■□□□ 1.9
SHMT1-203ENST00000354098 SPDYE2BA6NHP3 402 aa26.89■■□□□ 1.9
SHMT1-203ENST00000354098 SPDYE6P0CI01 402 aa26.89■■□□□ 1.9
SHMT1-203ENST00000354098 MAP3K12Q12852 859 aa26.89■■□□□ 1.9
SHMT1-203ENST00000354098 DAGLAQ9Y4D2 1042 aa26.89■■□□□ 1.9
SHMT1-203ENST00000354098 CHGBP05060 677 aa26.89■■□□□ 1.89
SHMT1-203ENST00000354098 ZDHHC15Q96MV8 337 aa26.89■■□□□ 1.89
SHMT1-203ENST00000354098 DOCK2Q92608 1830 aa26.88■■□□□ 1.89
SHMT1-203ENST00000354098 NAA16Q6N069 864 aaPredicted RBP26.88■■□□□ 1.89
SHMT1-203ENST00000354098 APOBEC3HQ6NTF7 200 aaKnown RBP26.88■■□□□ 1.89
SHMT1-203ENST00000354098 ADGRA1Q86SQ6 560 aa26.88■■□□□ 1.89
SHMT1-203ENST00000354098 MAGEB6Q8N7X4 407 aa26.88■■□□□ 1.89
SHMT1-203ENST00000354098 CLEC11AQ9Y240 323 aa26.88■■□□□ 1.89
SHMT1-203ENST00000354098 SLFNL1Q499Z3 407 aa26.87■■□□□ 1.89
SHMT1-203ENST00000354098 SLC9C2Q5TAH2 1124 aa26.87■■□□□ 1.89
SHMT1-203ENST00000354098 KBTBD3Q8NAB2 608 aa26.87■■□□□ 1.89
SHMT1-203ENST00000354098 GTF3C3Q9Y5Q9 886 aa26.87■■□□□ 1.89
SHMT1-203ENST00000354098 GAKO14976 1311 aa26.87■■□□□ 1.89
SHMT1-203ENST00000354098 GSTO1P78417 241 aa26.86■■□□□ 1.89
SHMT1-203ENST00000354098 FAM163AQ96GL9 167 aaPredicted RBP26.86■■□□□ 1.89
SHMT1-203ENST00000354098 MROH7-TTC4A0A0A0MT08 1334 aa26.86■■□□□ 1.89
SHMT1-203ENST00000354098 PDE6AP16499 860 aa26.85■■□□□ 1.89
SHMT1-203ENST00000354098 CYP7A1P22680 504 aa26.85■■□□□ 1.89
SHMT1-203ENST00000354098 RGS3P49796 1198 aa26.85■■□□□ 1.89
SHMT1-203ENST00000354098 SLF2Q8IX21 1173 aa26.85■■□□□ 1.89
SHMT1-203ENST00000354098 TDRD3Q9H7E2 651 aaKnown RBP26.85■■□□□ 1.89
SHMT1-203ENST00000354098 TTC22Q5TAA0 569 aa26.85■■□□□ 1.89
SHMT1-203ENST00000354098 MYH2Q9UKX2 1941 aa26.85■■□□□ 1.89
SHMT1-203ENST00000354098 MAST2Q6P0Q8 1798 aa26.84■■□□□ 1.89
SHMT1-203ENST00000354098 CLRN2A0PK11 232 aa26.84■■□□□ 1.89
SHMT1-203ENST00000354098 TRIM6-TRIM34B2RNG4 842 aa26.84■■□□□ 1.89
SHMT1-203ENST00000354098 LDHCP07864 332 aa26.84■■□□□ 1.89
SHMT1-203ENST00000354098 GSPT1P15170 499 aaKnown RBP26.84■■□□□ 1.89
SHMT1-203ENST00000354098 ANGEL2Q5VTE6 544 aaKnown RBP26.84■■□□□ 1.89
SHMT1-203ENST00000354098 LDHDQ86WU2 507 aa26.84■■□□□ 1.89
SHMT1-203ENST00000354098 EVI5LQ96CN4 794 aa26.84■■□□□ 1.89
SHMT1-203ENST00000354098 GGA3Q9NZ52 723 aa26.84■■□□□ 1.89
SHMT1-203ENST00000354098 PGAP2Q9UHJ9 254 aa26.84■■□□□ 1.89
SHMT1-203ENST00000354098 SCAF8Q9UPN6 1271 aaKnown RBP26.84■■□□□ 1.89
SHMT1-203ENST00000354098 IGSF3O75054 1194 aa26.83■■□□□ 1.89
SHMT1-203ENST00000354098 ZC3H15Q8WU90 426 aaKnown RBP26.83■■□□□ 1.89
SHMT1-203ENST00000354098 RILPL2Q969X0 211 aa26.83■■□□□ 1.89
SHMT1-203ENST00000354098 FSD1Q9BTV5 496 aa26.83■■□□□ 1.89
SHMT1-203ENST00000354098 DDX24Q9GZR7 859 aaKnown RBP eCLIP26.83■■□□□ 1.89
SHMT1-203ENST00000354098 ZNF532Q9HCE3 1301 aa26.83■■□□□ 1.89
SHMT1-203ENST00000354098 GPR75-ASB3A0A0A6YYF3 556 aa26.82■■□□□ 1.88
SHMT1-203ENST00000354098 TCRBV5S4A2TA0A5A2 114 aa26.82■■□□□ 1.88
SHMT1-203ENST00000354098 ADD2P35612 726 aa26.82■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms