RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 GIMAP7Q8NHV1 300 aa9.39□□□□□ -0.91
ATG4A-201ENST00000343524 TBC1D22AQ8WUA7 517 aa9.39□□□□□ -0.91
ATG4A-201ENST00000343524 ZCCHC17Q9NP64 241 aaKnown RBP9.39□□□□□ -0.91
ATG4A-201ENST00000343524 NR1I2O75469 434 aa9.38□□□□□ -0.91
ATG4A-201ENST00000343524 GNAI2P04899 355 aa9.38□□□□□ -0.91
ATG4A-201ENST00000343524 CCDC30Q5VVM6 783 aa9.38□□□□□ -0.91
ATG4A-201ENST00000343524 ATL3Q6DD88 541 aa9.38□□□□□ -0.91
ATG4A-201ENST00000343524 CNTROBQ8N137 903 aa9.38□□□□□ -0.91
ATG4A-201ENST00000343524 LRRN4CLQ8ND94 238 aa9.38□□□□□ -0.91
ATG4A-201ENST00000343524 CTCFLQ8NI51 663 aaPredicted RBP9.38□□□□□ -0.91
ATG4A-201ENST00000343524 KCNG1Q9UIX4 513 aa9.38□□□□□ -0.91
ATG4A-201ENST00000343524 CHMP3Q9Y3E7 222 aa9.38□□□□□ -0.91
ATG4A-201ENST00000343524 MRFAP1Q9Y605 127 aa9.38□□□□□ -0.91
ATG4A-201ENST00000343524 ATXN2Q99700 1313 aaKnown RBP9.38□□□□□ -0.91
ATG4A-201ENST00000343524 NUP188Q5SRE5 1749 aa9.37□□□□□ -0.91
ATG4A-201ENST00000343524 PXDNQ92626 1479 aa9.37□□□□□ -0.91
ATG4A-201ENST00000343524 H3BQF6 201 aa9.37□□□□□ -0.91
ATG4A-201ENST00000343524 GNAI3P08754 354 aa9.37□□□□□ -0.91
ATG4A-201ENST00000343524 PSMA5P28066 241 aa9.37□□□□□ -0.91
ATG4A-201ENST00000343524 MAP3K9P80192 1104 aa9.37□□□□□ -0.91
ATG4A-201ENST00000343524 C11orf57Q6ZUT1 292 aaPredicted RBP9.37□□□□□ -0.91
ATG4A-201ENST00000343524 DHX40Q8IX18 779 aaKnown RBP9.37□□□□□ -0.91
ATG4A-201ENST00000343524 MICALL1Q8N3F8 863 aa9.37□□□□□ -0.91
ATG4A-201ENST00000343524 CEP112Q8N8E3 955 aa9.37□□□□□ -0.91
ATG4A-201ENST00000343524 MFRPQ9BY79 579 aa9.37□□□□□ -0.91
ATG4A-201ENST00000343524 PARD6BQ9BYG5 372 aa9.37□□□□□ -0.91
ATG4A-201ENST00000343524 ZKSCAN1P17029 563 aaPredicted RBP9.37□□□□□ -0.91
ATG4A-201ENST00000343524 PRELPP51888 382 aa9.37□□□□□ -0.91
ATG4A-201ENST00000343524 E2F4Q16254 413 aa9.37□□□□□ -0.91
ATG4A-201ENST00000343524 GBP6Q6ZN66 633 aa9.37□□□□□ -0.91
ATG4A-201ENST00000343524 TMC6Q7Z403 805 aa9.37□□□□□ -0.91
ATG4A-201ENST00000343524 MEIS3Q99687 375 aa9.37□□□□□ -0.91
ATG4A-201ENST00000343524 LSG1Q9H089 658 aaKnown RBP9.37□□□□□ -0.91
ATG4A-201ENST00000343524 C14orf93Q9H972 538 aaKnown RBP9.37□□□□□ -0.91
ATG4A-201ENST00000343524 CCDC9Q9Y3X0 531 aaKnown RBP9.37□□□□□ -0.91
ATG4A-201ENST00000343524 STK24Q9Y6E0 443 aa9.37□□□□□ -0.91
ATG4A-201ENST00000343524 NWD2Q9ULI1 1742 aa9.37□□□□□ -0.91
ATG4A-201ENST00000343524 NEXMIFQ5QGS0 1516 aa9.36□□□□□ -0.91
ATG4A-201ENST00000343524 RPGRIP1LQ68CZ1 1315 aa9.36□□□□□ -0.91
ATG4A-201ENST00000343524 DLG5Q8TDM6 1919 aa9.36□□□□□ -0.91
ATG4A-201ENST00000343524 GOLIM4O00461 696 aa9.36□□□□□ -0.91
ATG4A-201ENST00000343524 ARHGAP6O43182 974 aa9.36□□□□□ -0.91
ATG4A-201ENST00000343524 NEDD9Q14511 834 aa9.36□□□□□ -0.91
ATG4A-201ENST00000343524 TRIM65Q6PJ69 517 aa9.36□□□□□ -0.91
ATG4A-201ENST00000343524 CDC37L1Q7L3B6 337 aa9.36□□□□□ -0.91
ATG4A-201ENST00000343524 NUTM1Q86Y26 1132 aa9.36□□□□□ -0.91
ATG4A-201ENST00000343524 FMNL3Q8IVF7 1028 aa9.36□□□□□ -0.91
ATG4A-201ENST00000343524 AOPEPQ8N6M6 819 aa9.36□□□□□ -0.91
ATG4A-201ENST00000343524 PDE11AQ9HCR9 933 aa9.36□□□□□ -0.91
ATG4A-201ENST00000343524 TRAK1Q9UPV9 953 aa9.36□□□□□ -0.91
ATG4A-201ENST00000343524 MYH15Q9Y2K3 1946 aa9.36□□□□□ -0.91
ATG4A-201ENST00000343524 NRKQ7Z2Y5 1582 aa9.36□□□□□ -0.91
ATG4A-201ENST00000343524 RAB11FIP3O75154 756 aa9.35□□□□□ -0.91
ATG4A-201ENST00000343524 HSPA6P17066 643 aa9.35□□□□□ -0.91
ATG4A-201ENST00000343524 MCM3P25205 808 aa9.35□□□□□ -0.91
ATG4A-201ENST00000343524 RDXP35241 583 aaKnown RBP9.35□□□□□ -0.91
ATG4A-201ENST00000343524 IRX1P78414 480 aaPredicted RBP9.35□□□□□ -0.91
ATG4A-201ENST00000343524 MAP2K1Q02750 393 aaPredicted RBP9.35□□□□□ -0.91
ATG4A-201ENST00000343524 ARMCX5Q6P1M9 558 aa9.35□□□□□ -0.91
ATG4A-201ENST00000343524 LRRC31Q6UY01 552 aa9.35□□□□□ -0.91
ATG4A-201ENST00000343524 SPATS2Q86XZ4 545 aaKnown RBP9.35□□□□□ -0.91
ATG4A-201ENST00000343524 CCAR1Q8IX12 1150 aaKnown RBP9.35□□□□□ -0.91
ATG4A-201ENST00000343524 JMYQ8N9B5 988 aa9.35□□□□□ -0.91
ATG4A-201ENST00000343524 C8orf58Q8NAV2 365 aa9.35□□□□□ -0.91
ATG4A-201ENST00000343524 MSANTD4Q8NCY6 345 aa9.35□□□□□ -0.91
ATG4A-201ENST00000343524 KCNB2Q92953 911 aa9.35□□□□□ -0.91
ATG4A-201ENST00000343524 ALDH8A1Q9H2A2 487 aaPredicted RBP9.35□□□□□ -0.91
ATG4A-201ENST00000343524 VIPAS39Q9H9C1 493 aa9.35□□□□□ -0.91
ATG4A-201ENST00000343524 RAB21Q9UL25 225 aa9.35□□□□□ -0.91
ATG4A-201ENST00000343524 PXDNLA1KZ92 1463 aa9.35□□□□□ -0.91
ATG4A-201ENST00000343524 A0A0G2JS52 829 aa9.35□□□□□ -0.91
ATG4A-201ENST00000343524 SSR1P43307 286 aaKnown RBP9.35□□□□□ -0.91
ATG4A-201ENST00000343524 FAM160A1Q05DH4 1040 aa9.35□□□□□ -0.91
ATG4A-201ENST00000343524 FAM182BQ5T319 152 aa9.35□□□□□ -0.91
ATG4A-201ENST00000343524 CNNM3Q8NE01 707 aa9.35□□□□□ -0.91
ATG4A-201ENST00000343524 AFAP1L1Q8TED9 768 aa9.35□□□□□ -0.91
ATG4A-201ENST00000343524 PRAM1Q96QH2 718 aa9.35□□□□□ -0.91
ATG4A-201ENST00000343524 GNL3LQ9NVN8 582 aaKnown RBP9.35□□□□□ -0.91
ATG4A-201ENST00000343524 BSDC1Q9NW68 430 aaPredicted RBP9.35□□□□□ -0.91
ATG4A-201ENST00000343524 CD163L1Q9NR16 1453 aa9.34□□□□□ -0.91
ATG4A-201ENST00000343524 A6NNZ2 444 aa9.34□□□□□ -0.91
ATG4A-201ENST00000343524 ELL2O00472 640 aaPredicted RBP9.34□□□□□ -0.91
ATG4A-201ENST00000343524 LARGE1O95461 756 aa9.34□□□□□ -0.91
ATG4A-201ENST00000343524 DDR1Q08345 913 aa9.34□□□□□ -0.91
ATG4A-201ENST00000343524 TUBB8Q3ZCM7 444 aa9.34□□□□□ -0.91
ATG4A-201ENST00000343524 HDGFL2Q7Z4V5 671 aaPredicted RBP9.34□□□□□ -0.91
ATG4A-201ENST00000343524 SRGAP1Q7Z6B7 1085 aa9.34□□□□□ -0.91
ATG4A-201ENST00000343524 ZNF687Q8N1G0 1237 aa9.34□□□□□ -0.91
ATG4A-201ENST00000343524 JAKMIP1Q96N16 626 aaKnown RBP9.34□□□□□ -0.91
ATG4A-201ENST00000343524 FAN1Q9Y2M0 1017 aa9.34□□□□□ -0.91
ATG4A-201ENST00000343524 SOS1Q07889 1333 aaPredicted RBP9.34□□□□□ -0.91
ATG4A-201ENST00000343524 EBAG9O00559 213 aa9.33□□□□□ -0.92
ATG4A-201ENST00000343524 APBA3O96018 575 aa9.33□□□□□ -0.92
ATG4A-201ENST00000343524 CHMP4BP1P59074 171 aa9.33□□□□□ -0.92
ATG4A-201ENST00000343524 FAM98CQ17RN3 349 aaKnown RBP9.33□□□□□ -0.92
ATG4A-201ENST00000343524 MAP9Q49MG5 647 aa9.33□□□□□ -0.92
ATG4A-201ENST00000343524 BEND6Q5SZJ8 279 aaPredicted RBP9.33□□□□□ -0.92
ATG4A-201ENST00000343524 PGBD1Q96JS3 809 aa9.33□□□□□ -0.92
ATG4A-201ENST00000343524 ZNF396Q96N95 335 aaPredicted RBP9.33□□□□□ -0.92
ATG4A-201ENST00000343524 XPO4Q9C0E2 1151 aaKnown RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms