RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 ORC3Q9UBD5 711 aaPredicted RBP11.74□□□□□ -0.53
USP54-201ENST00000339859 MARCH10Q8NA82 808 aaPredicted RBP11.74□□□□□ -0.53
USP54-201ENST00000339859 SAMM50Q9Y512 469 aa11.74□□□□□ -0.53
USP54-201ENST00000339859 ZBED4O75132 1171 aa11.74□□□□□ -0.53
USP54-201ENST00000339859 ZAP70P43403 619 aa11.74□□□□□ -0.53
USP54-201ENST00000339859 GYG1P46976 350 aa11.74□□□□□ -0.53
USP54-201ENST00000339859 ODF2Q5BJF6 829 aa11.74□□□□□ -0.53
USP54-201ENST00000339859 CIAPIN1Q6FI81 312 aa11.74□□□□□ -0.53
USP54-201ENST00000339859 PNMA6EA0A0J9YXQ4 647 aa11.74□□□□□ -0.53
USP54-201ENST00000339859 TCP10Q12799 353 aa11.74□□□□□ -0.53
USP54-201ENST00000339859 PRKG1Q13976 671 aa11.74□□□□□ -0.53
USP54-201ENST00000339859 OTUD7BQ6GQQ9 843 aa11.74□□□□□ -0.53
USP54-201ENST00000339859 TGFBRAP1Q8WUH2 860 aa11.74□□□□□ -0.53
USP54-201ENST00000339859 NAP1L4Q99733 375 aaKnown RBP11.74□□□□□ -0.53
USP54-201ENST00000339859 USP44Q9H0E7 712 aa11.74□□□□□ -0.53
USP54-201ENST00000339859 GPR108Q9NPR9 543 aa11.74□□□□□ -0.53
USP54-201ENST00000339859 SPDYE3A6NKU9 549 aa11.74□□□□□ -0.53
USP54-201ENST00000339859 PLEKHM2Q8IWE5 1019 aa11.74□□□□□ -0.53
USP54-201ENST00000339859 SMC5Q8IY18 1101 aa11.74□□□□□ -0.53
USP54-201ENST00000339859 IVNS1ABPQ9Y6Y0 642 aa11.74□□□□□ -0.53
USP54-201ENST00000339859 PSDA5PKW4 1024 aaPredicted RBP11.73□□□□□ -0.53
USP54-201ENST00000339859 TBC1D9BQ66K14 1250 aa11.73□□□□□ -0.53
USP54-201ENST00000339859 KRI1Q8N9T8 703 aaKnown RBP11.73□□□□□ -0.53
USP54-201ENST00000339859 KBTBD3Q8NAB2 608 aa11.73□□□□□ -0.53
USP54-201ENST00000339859 PPP1R12BO60237 982 aaPredicted RBP11.73□□□□□ -0.53
USP54-201ENST00000339859 ATP5JP18859 108 aa11.73□□□□□ -0.53
USP54-201ENST00000339859 BRPF1P55201 1214 aaPredicted RBP11.73□□□□□ -0.53
USP54-201ENST00000339859 LRRC27Q9C0I9 530 aa11.73□□□□□ -0.53
USP54-201ENST00000339859 BSDC1Q9NW68 430 aaPredicted RBP11.73□□□□□ -0.53
USP54-201ENST00000339859 ZNF532Q9HCE3 1301 aa11.73□□□□□ -0.53
USP54-201ENST00000339859 PRPF40AO75400 957 aaKnown RBP11.73□□□□□ -0.53
USP54-201ENST00000339859 PRM3Q9NNZ6 103 aa11.73□□□□□ -0.53
USP54-201ENST00000339859 TCP11L1Q9NUJ3 509 aa11.73□□□□□ -0.53
USP54-201ENST00000339859 PDE4CQ08493 712 aa11.73□□□□□ -0.53
USP54-201ENST00000339859 Q6ZUG5 572 aa11.73□□□□□ -0.53
USP54-201ENST00000339859 ARMC9Q7Z3E5 817 aa11.73□□□□□ -0.53
USP54-201ENST00000339859 IBTKQ9P2D0 1353 aaPredicted RBP11.73□□□□□ -0.53
USP54-201ENST00000339859 GRIN3BO60391 1043 aa11.73□□□□□ -0.53
USP54-201ENST00000339859 KIF20AO95235 890 aa11.73□□□□□ -0.53
USP54-201ENST00000339859 PDE8BO95263 885 aa11.73□□□□□ -0.53
USP54-201ENST00000339859 TCP10L2B9ZVM9 353 aa11.72□□□□□ -0.53
USP54-201ENST00000339859 GPAA1O43292 621 aa11.72□□□□□ -0.53
USP54-201ENST00000339859 IRX3P78415 501 aaPredicted RBP11.72□□□□□ -0.53
USP54-201ENST00000339859 ARHGEF6Q15052 776 aa11.72□□□□□ -0.53
USP54-201ENST00000339859 CCDC102BQ68D86 513 aa11.72□□□□□ -0.53
USP54-201ENST00000339859 KIAA0825Q8IV33 1275 aa11.72□□□□□ -0.53
USP54-201ENST00000339859 MAPKAPK5Q8IW41 473 aa11.72□□□□□ -0.53
USP54-201ENST00000339859 SSH3Q8TE77 659 aa11.72□□□□□ -0.53
USP54-201ENST00000339859 SLC16A10Q8TF71 515 aa11.72□□□□□ -0.53
USP54-201ENST00000339859 TNMDQ9H2S6 317 aa11.72□□□□□ -0.53
USP54-201ENST00000339859 BMP15O95972 392 aa11.72□□□□□ -0.53
USP54-201ENST00000339859 CALML3P27482 149 aa11.72□□□□□ -0.53
USP54-201ENST00000339859 BCAMP50895 628 aa11.72□□□□□ -0.53
USP54-201ENST00000339859 SUPT20HL1Q3ZLR7 823 aa11.72□□□□□ -0.53
USP54-201ENST00000339859 BRF1Q92994 677 aa11.72□□□□□ -0.53
USP54-201ENST00000339859 TSG101Q99816 390 aa11.72□□□□□ -0.53
USP54-201ENST00000339859 COA1Q9GZY4 146 aa11.72□□□□□ -0.53
USP54-201ENST00000339859 USP17L3A6NCW0 530 aa11.72□□□□□ -0.53
USP54-201ENST00000339859 USP17L4A6NCW7 530 aa11.72□□□□□ -0.53
USP54-201ENST00000339859 IBSPP21815 317 aaPredicted RBP11.72□□□□□ -0.53
USP54-201ENST00000339859 USP17L1Q7RTZ2 530 aa11.72□□□□□ -0.53
USP54-201ENST00000339859 AMPD3Q01432 767 aa11.72□□□□□ -0.53
USP54-201ENST00000339859 STXBP4Q6ZWJ1 553 aa11.72□□□□□ -0.53
USP54-201ENST00000339859 SLC5A4Q9NY91 659 aa11.72□□□□□ -0.53
USP54-201ENST00000339859 MYO3BQ8WXR4 1341 aa11.72□□□□□ -0.53
USP54-201ENST00000339859 BTDP43251 543 aa11.72□□□□□ -0.53
USP54-201ENST00000339859 CREB3L3Q68CJ9 461 aa11.72□□□□□ -0.53
USP54-201ENST00000339859 C21orf2O43822 256 aa11.71□□□□□ -0.53
USP54-201ENST00000339859 SMARCE1Q969G3 411 aa11.71□□□□□ -0.53
USP54-201ENST00000339859 COPRSQ9NQ92 184 aa11.71□□□□□ -0.53
USP54-201ENST00000339859 SCNN1DP51172 638 aa11.71□□□□□ -0.53
USP54-201ENST00000339859 LRRC24Q50LG9 513 aa11.71□□□□□ -0.53
USP54-201ENST00000339859 CNTNAP4Q9C0A0 1308 aa11.71□□□□□ -0.54
USP54-201ENST00000339859 CHMLP26374 656 aa11.71□□□□□ -0.54
USP54-201ENST00000339859 GJB2P29033 226 aa11.71□□□□□ -0.54
USP54-201ENST00000339859 GUCY1B3Q02153 619 aa11.71□□□□□ -0.54
USP54-201ENST00000339859 TMEM87BQ96K49 555 aa11.71□□□□□ -0.54
USP54-201ENST00000339859 DBNDD1Q9H9R9 158 aa11.71□□□□□ -0.54
USP54-201ENST00000339859 CDHR2Q9BYE9 1310 aa11.71□□□□□ -0.54
USP54-201ENST00000339859 GNA11P29992 359 aa11.71□□□□□ -0.54
USP54-201ENST00000339859 RAB11FIP4Q86YS3 637 aa11.71□□□□□ -0.54
USP54-201ENST00000339859 SEC31BQ9NQW1 1179 aa11.71□□□□□ -0.54
USP54-201ENST00000339859 PATL2C9JE40 543 aaKnown RBP11.7□□□□□ -0.54
USP54-201ENST00000339859 CCDC70Q6NSX1 233 aa11.7□□□□□ -0.54
USP54-201ENST00000339859 GLT8D2Q9H1C3 349 aa11.7□□□□□ -0.54
USP54-201ENST00000339859 HLFQ16534 295 aa11.7□□□□□ -0.54
USP54-201ENST00000339859 TMEM87AQ8NBN3 555 aa11.7□□□□□ -0.54
USP54-201ENST00000339859 SCAND2PQ9GZW5 306 aaPredicted RBP11.7□□□□□ -0.54
USP54-201ENST00000339859 EZH2Q15910 746 aaKnown RBP11.7□□□□□ -0.54
USP54-201ENST00000339859 BRDTQ58F21 947 aaPredicted RBP11.7□□□□□ -0.54
USP54-201ENST00000339859 ALG1Q9BT22 464 aa11.7□□□□□ -0.54
USP54-201ENST00000339859 DHX32Q7L7V1 743 aaKnown RBP11.7□□□□□ -0.54
USP54-201ENST00000339859 CKAP2LQ8IYA6 745 aa11.7□□□□□ -0.54
USP54-201ENST00000339859 BRIP1Q9BX63 1249 aa11.7□□□□□ -0.54
USP54-201ENST00000339859 RBM25P49756 843 aaKnown RBP11.69□□□□□ -0.54
USP54-201ENST00000339859 LZTS2Q9BRK4 669 aa11.69□□□□□ -0.54
USP54-201ENST00000339859 PDCL3Q9H2J4 239 aa11.69□□□□□ -0.54
USP54-201ENST00000339859 NAP1L1P55209 391 aaKnown RBP11.69□□□□□ -0.54
USP54-201ENST00000339859 LINC00116Q8NCU8 138 aa11.69□□□□□ -0.54
USP54-201ENST00000339859 SMCR8Q8TEV9 937 aaPredicted RBP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms