RNA–Protein interactions for RNA: ENST00000336904.7

SNCA-201, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 3,041 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-201ENST00000336904 LINC00116Q8NCU8 138 aa10.39□□□□□ -0.75
SNCA-201ENST00000336904 FUCA2Q9BTY2 467 aa10.39□□□□□ -0.75
SNCA-201ENST00000336904 PLA2G12BQ9BX93 195 aa10.39□□□□□ -0.75
SNCA-201ENST00000336904 ORC3Q9UBD5 711 aaPredicted RBP10.39□□□□□ -0.75
SNCA-201ENST00000336904 CLIC4Q9Y696 253 aa10.39□□□□□ -0.75
SNCA-201ENST00000336904 MRVI1Q9Y6F6 885 aa10.39□□□□□ -0.75
SNCA-201ENST00000336904 LRP6O75581 1613 aa10.38□□□□□ -0.75
SNCA-201ENST00000336904 CHRNDQ07001 517 aa10.38□□□□□ -0.75
SNCA-201ENST00000336904 CCAR1Q8IX12 1150 aaKnown RBP10.38□□□□□ -0.75
SNCA-201ENST00000336904 NCOA7Q8NI08 942 aa10.38□□□□□ -0.75
SNCA-201ENST00000336904 SMARCC2Q8TAQ2 1214 aa10.38□□□□□ -0.75
SNCA-201ENST00000336904 NGLY1Q96IV0 654 aa10.38□□□□□ -0.75
SNCA-201ENST00000336904 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.38□□□□□ -0.75
SNCA-201ENST00000336904 SPEF2Q9C093 1822 aa10.38□□□□□ -0.75
SNCA-201ENST00000336904 CDHR2Q9BYE9 1310 aa10.38□□□□□ -0.75
SNCA-201ENST00000336904 MINDY4BA8MYZ0 360 aa10.38□□□□□ -0.75
SNCA-201ENST00000336904 PRDM1O75626 825 aa10.38□□□□□ -0.75
SNCA-201ENST00000336904 MARCKSP29966 332 aaPredicted RBP10.38□□□□□ -0.75
SNCA-201ENST00000336904 CDC27P30260 824 aa10.38□□□□□ -0.75
SNCA-201ENST00000336904 MCM5P33992 734 aa10.38□□□□□ -0.75
SNCA-201ENST00000336904 LRP2BPQ9P2M1 347 aa10.38□□□□□ -0.75
SNCA-201ENST00000336904 BIN1O00499 593 aa10.37□□□□□ -0.75
SNCA-201ENST00000336904 HMGB1P09429 215 aaKnown RBP10.37□□□□□ -0.75
SNCA-201ENST00000336904 CSPP1Q1MSJ5 1256 aa10.37□□□□□ -0.75
SNCA-201ENST00000336904 SCAND2PQ9GZW5 306 aaPredicted RBP10.37□□□□□ -0.75
SNCA-201ENST00000336904 TFCP2L1Q9NZI6 479 aa10.37□□□□□ -0.75
SNCA-201ENST00000336904 RFX7Q2KHR2 1363 aa10.37□□□□□ -0.75
SNCA-201ENST00000336904 ATP2B1P20020 1258 aa10.37□□□□□ -0.75
SNCA-201ENST00000336904 PIBF1Q8WXW3 757 aa10.37□□□□□ -0.75
SNCA-201ENST00000336904 LPIN2Q92539 896 aa10.37□□□□□ -0.75
SNCA-201ENST00000336904 TSC1Q92574 1164 aa10.37□□□□□ -0.75
SNCA-201ENST00000336904 C8orf76Q96K31 380 aa10.37□□□□□ -0.75
SNCA-201ENST00000336904 GPR101Q96P66 508 aaPredicted RBP10.37□□□□□ -0.75
SNCA-201ENST00000336904 NRBP1Q9UHY1 535 aa10.37□□□□□ -0.75
SNCA-201ENST00000336904 NOL7Q9UMY1 257 aaKnown RBP10.37□□□□□ -0.75
SNCA-201ENST00000336904 ZKSCAN5Q9Y2L8 839 aa10.37□□□□□ -0.75
SNCA-201ENST00000336904 AKAP11Q9UKA4 1901 aa10.37□□□□□ -0.75
SNCA-201ENST00000336904 NPHP1O15259 732 aa10.36□□□□□ -0.75
SNCA-201ENST00000336904 NTSR2O95665 410 aa10.36□□□□□ -0.75
SNCA-201ENST00000336904 CCDC192P0DO97 292 aa10.36□□□□□ -0.75
SNCA-201ENST00000336904 SLC5A1P13866 664 aa10.36□□□□□ -0.75
SNCA-201ENST00000336904 TDO2P48775 406 aa10.36□□□□□ -0.75
SNCA-201ENST00000336904 RBM10P98175 930 aaKnown RBP10.36□□□□□ -0.75
SNCA-201ENST00000336904 TRDNQ13061 729 aa10.36□□□□□ -0.75
SNCA-201ENST00000336904 DNTTIP2Q5QJE6 756 aaKnown RBP10.36□□□□□ -0.75
SNCA-201ENST00000336904 CELF1Q92879 486 aaKnown RBP10.36□□□□□ -0.75
SNCA-201ENST00000336904 NAPBQ9H115 298 aa10.36□□□□□ -0.75
SNCA-201ENST00000336904 ALDH8A1Q9H2A2 487 aaPredicted RBP10.36□□□□□ -0.75
SNCA-201ENST00000336904 IGHMBP2P38935 993 aaKnown RBP10.36□□□□□ -0.75
SNCA-201ENST00000336904 DYNLL1P63167 89 aaKnown RBP10.36□□□□□ -0.75
SNCA-201ENST00000336904 SPECC1Q5M775 1068 aa10.36□□□□□ -0.75
SNCA-201ENST00000336904 TBC1D9BQ66K14 1250 aa10.36□□□□□ -0.75
SNCA-201ENST00000336904 C11orf57Q6ZUT1 292 aaPredicted RBP10.36□□□□□ -0.75
SNCA-201ENST00000336904 FSIP1Q8NA03 581 aa10.36□□□□□ -0.75
SNCA-201ENST00000336904 CBX8Q9HC52 389 aa10.36□□□□□ -0.75
SNCA-201ENST00000336904 RAI14Q9P0K7 980 aa10.36□□□□□ -0.75
SNCA-201ENST00000336904 CTNNA3Q9UI47 895 aa10.36□□□□□ -0.75
SNCA-201ENST00000336904 SLC4A4Q9Y6R1 1079 aa10.36□□□□□ -0.75
SNCA-201ENST00000336904 TCRBV5S4A2TA0A5A2 114 aa10.36□□□□□ -0.75
SNCA-201ENST00000336904 ZFYP08048 801 aaPredicted RBP10.36□□□□□ -0.75
SNCA-201ENST00000336904 CHAF1AQ13111 956 aaPredicted RBP10.36□□□□□ -0.75
SNCA-201ENST00000336904 NUP133Q8WUM0 1156 aa10.36□□□□□ -0.75
SNCA-201ENST00000336904 STRBPQ96SI9 672 aaKnown RBP10.36□□□□□ -0.75
SNCA-201ENST00000336904 CCDC39Q9UFE4 941 aa10.36□□□□□ -0.75
SNCA-201ENST00000336904 FGFR2P21802 821 aa10.35□□□□□ -0.75
SNCA-201ENST00000336904 GUCY1A2P33402 732 aa10.35□□□□□ -0.75
SNCA-201ENST00000336904 PTPN21Q16825 1174 aa10.35□□□□□ -0.75
SNCA-201ENST00000336904 DRC7Q8IY82 874 aa10.35□□□□□ -0.75
SNCA-201ENST00000336904 IFNL3Q8IZI9 196 aa10.35□□□□□ -0.75
SNCA-201ENST00000336904 ZSWIM5Q9P217 1185 aa10.35□□□□□ -0.75
SNCA-201ENST00000336904 ERVV-1B6SEH8 477 aa10.35□□□□□ -0.75
SNCA-201ENST00000336904 METAP2P50579 478 aaKnown RBP eCLIP10.35□□□□□ -0.75
SNCA-201ENST00000336904 SF3A1Q15459 793 aaKnown RBP10.35□□□□□ -0.75
SNCA-201ENST00000336904 CCDC152Q4G0S7 254 aa10.35□□□□□ -0.75
SNCA-201ENST00000336904 TMEM67Q5HYA8 995 aa10.35□□□□□ -0.75
SNCA-201ENST00000336904 AGXT2Q9BYV1 514 aa10.35□□□□□ -0.75
SNCA-201ENST00000336904 MTMR7Q9Y216 660 aa10.35□□□□□ -0.75
SNCA-201ENST00000336904 SALL1Q9NSC2 1324 aa10.35□□□□□ -0.75
SNCA-201ENST00000336904 COL14A1Q05707 1796 aaKnown RBP10.35□□□□□ -0.75
SNCA-201ENST00000336904 BAZ2BQ9UIF8 2168 aaKnown RBP10.35□□□□□ -0.75
SNCA-201ENST00000336904 GNPATO15228 680 aa10.34□□□□□ -0.75
SNCA-201ENST00000336904 CYP7A1P22680 504 aa10.34□□□□□ -0.75
SNCA-201ENST00000336904 LRMPQ12912 555 aa10.34□□□□□ -0.75
SNCA-201ENST00000336904 VPS37DQ86XT2 251 aa10.34□□□□□ -0.75
SNCA-201ENST00000336904 CLSTN2Q9H4D0 955 aa10.34□□□□□ -0.75
SNCA-201ENST00000336904 PCDHA7Q9UN72 937 aa10.34□□□□□ -0.75
SNCA-201ENST00000336904 MYH3P11055 1940 aa10.34□□□□□ -0.75
SNCA-201ENST00000336904 SPATA31A5Q5VU36 1347 aa10.34□□□□□ -0.75
SNCA-201ENST00000336904 SPATA31A7Q8IWB4 1347 aa10.34□□□□□ -0.75
SNCA-201ENST00000336904 IFIT3O14879 490 aaKnown RBP10.34□□□□□ -0.75
SNCA-201ENST00000336904 PTGS1P23219 599 aa10.34□□□□□ -0.75
SNCA-201ENST00000336904 GNL2Q13823 731 aaKnown RBP10.34□□□□□ -0.75
SNCA-201ENST00000336904 STK38Q15208 465 aa10.34□□□□□ -0.75
SNCA-201ENST00000336904 SASS6Q6UVJ0 657 aa10.34□□□□□ -0.75
SNCA-201ENST00000336904 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.34□□□□□ -0.75
SNCA-201ENST00000336904 ZNF274Q96GC6 653 aaPredicted RBP10.34□□□□□ -0.75
SNCA-201ENST00000336904 SLC26A6Q9BXS9 759 aa10.34□□□□□ -0.75
SNCA-201ENST00000336904 PYCARDQ9ULZ3 195 aa10.34□□□□□ -0.75
SNCA-201ENST00000336904 KCNJ14Q9UNX9 436 aa10.34□□□□□ -0.75
SNCA-201ENST00000336904 GSG1L2A8MUP6 293 aa10.33□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms