RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 DTHD1Q6ZMT9 781 aa14.21□□□□□ -0.13
SDC3-201ENST00000336798 C10orf67Q8IYJ2 551 aa14.21□□□□□ -0.13
SDC3-201ENST00000336798 KRT222Q8N1A0 295 aa14.21□□□□□ -0.13
SDC3-201ENST00000336798 BANK1Q8NDB2 785 aa14.21□□□□□ -0.13
SDC3-201ENST00000336798 ABCC5O15440 1437 aa14.21□□□□□ -0.13
SDC3-201ENST00000336798 E7EVH7 732 aa14.21□□□□□ -0.13
SDC3-201ENST00000336798 ANKS4BQ8N8V4 417 aa14.21□□□□□ -0.13
SDC3-201ENST00000336798 MAPK8IP1Q9UQF2 711 aa14.21□□□□□ -0.13
SDC3-201ENST00000336798 BMP15O95972 392 aa14.21□□□□□ -0.13
SDC3-201ENST00000336798 F13A1P00488 732 aa14.21□□□□□ -0.13
SDC3-201ENST00000336798 SF3A3Q12874 501 aaKnown RBP eCLIP14.21□□□□□ -0.13
SDC3-201ENST00000336798 C8orf58Q8NAV2 365 aa14.21□□□□□ -0.13
SDC3-201ENST00000336798 CCT6BQ92526 530 aa14.21□□□□□ -0.13
SDC3-201ENST00000336798 MYCLP12524 364 aaPredicted RBP14.21□□□□□ -0.14
SDC3-201ENST00000336798 NOLC1Q14978 699 aaKnown RBP eCLIP14.21□□□□□ -0.14
SDC3-201ENST00000336798 IFNKQ9P0W0 207 aa14.21□□□□□ -0.14
SDC3-201ENST00000336798 RTL9Q8NET4 1388 aa14.21□□□□□ -0.14
SDC3-201ENST00000336798 OPA1O60313 960 aa14.2□□□□□ -0.14
SDC3-201ENST00000336798 CCDC24Q8N4L8 307 aa14.2□□□□□ -0.14
SDC3-201ENST00000336798 FNBP1Q96RU3 617 aa14.2□□□□□ -0.14
SDC3-201ENST00000336798 NYXQ9GZU5 481 aa14.2□□□□□ -0.14
SDC3-201ENST00000336798 KRT86O43790 486 aa14.2□□□□□ -0.14
SDC3-201ENST00000336798 UVSSAQ2YD98 709 aa14.2□□□□□ -0.14
SDC3-201ENST00000336798 CCDC121Q6ZUS5 278 aa14.2□□□□□ -0.14
SDC3-201ENST00000336798 CPLX4Q7Z7G2 160 aa14.2□□□□□ -0.14
SDC3-201ENST00000336798 IL15P40933 162 aaPredicted RBP14.2□□□□□ -0.14
SDC3-201ENST00000336798 TPTE2Q6XPS3 522 aa14.2□□□□□ -0.14
SDC3-201ENST00000336798 TRIM7Q9C029 511 aa14.2□□□□□ -0.14
SDC3-201ENST00000336798 RNF113AO15541 343 aaKnown RBP14.2□□□□□ -0.14
SDC3-201ENST00000336798 PARP1P09874 1014 aaKnown RBP14.2□□□□□ -0.14
SDC3-201ENST00000336798 KRT83P78385 493 aa14.2□□□□□ -0.14
SDC3-201ENST00000336798 CPSF2Q9P2I0 782 aaKnown RBP14.2□□□□□ -0.14
SDC3-201ENST00000336798 RASSF4Q9H2L5 321 aa14.2□□□□□ -0.14
SDC3-201ENST00000336798 B4DLN1 442 aa14.19□□□□□ -0.14
SDC3-201ENST00000336798 DAPK3O43293 454 aa14.19□□□□□ -0.14
SDC3-201ENST00000336798 MRPL12P52815 198 aaKnown RBP14.19□□□□□ -0.14
SDC3-201ENST00000336798 TRAF1Q13077 416 aa14.19□□□□□ -0.14
SDC3-201ENST00000336798 NAA25Q14CX7 972 aa14.19□□□□□ -0.14
SDC3-201ENST00000336798 SYT10Q6XYQ8 523 aa14.19□□□□□ -0.14
SDC3-201ENST00000336798 RPUSD2Q8IZ73 545 aaKnown RBP14.19□□□□□ -0.14
SDC3-201ENST00000336798 GOLGA1Q92805 767 aa14.19□□□□□ -0.14
SDC3-201ENST00000336798 MSANTD4Q8NCY6 345 aa14.19□□□□□ -0.14
SDC3-201ENST00000336798 STMN4Q9H169 189 aaPredicted RBP14.19□□□□□ -0.14
SDC3-201ENST00000336798 BICDL2A1A5D9 508 aa14.19□□□□□ -0.14
SDC3-201ENST00000336798 CPA1P15085 419 aa14.19□□□□□ -0.14
SDC3-201ENST00000336798 SPAG1Q07617 926 aa14.19□□□□□ -0.14
SDC3-201ENST00000336798 FRMD4BQ9Y2L6 1034 aa14.19□□□□□ -0.14
SDC3-201ENST00000336798 MSH6P52701 1360 aa14.19□□□□□ -0.14
SDC3-201ENST00000336798 PTPDC1A2A3K4 754 aa14.19□□□□□ -0.14
SDC3-201ENST00000336798 GNPATO15228 680 aa14.19□□□□□ -0.14
SDC3-201ENST00000336798 ATP2A2P16615 1042 aaKnown RBP14.19□□□□□ -0.14
SDC3-201ENST00000336798 CAPN2P17655 700 aa14.19□□□□□ -0.14
SDC3-201ENST00000336798 KLHL40Q2TBA0 621 aa14.19□□□□□ -0.14
SDC3-201ENST00000336798 CCNT1O60563 726 aaKnown RBP14.18□□□□□ -0.14
SDC3-201ENST00000336798 DTNBO60941 627 aa14.18□□□□□ -0.14
SDC3-201ENST00000336798 GAS8O95995 478 aa14.18□□□□□ -0.14
SDC3-201ENST00000336798 RFX1P22670 979 aa14.18□□□□□ -0.14
SDC3-201ENST00000336798 AK2P54819 239 aa14.18□□□□□ -0.14
SDC3-201ENST00000336798 TBC1D32Q96NH3 1257 aa14.18□□□□□ -0.14
SDC3-201ENST00000336798 TRAF5O00463 557 aa14.18□□□□□ -0.14
SDC3-201ENST00000336798 SORBS3O60504 671 aa14.18□□□□□ -0.14
SDC3-201ENST00000336798 HSPA1LP34931 641 aa14.18□□□□□ -0.14
SDC3-201ENST00000336798 KRT24Q2M2I5 525 aa14.18□□□□□ -0.14
SDC3-201ENST00000336798 EP400NLQ6ZTU2 488 aa14.18□□□□□ -0.14
SDC3-201ENST00000336798 TTLL3Q9Y4R7 772 aa14.18□□□□□ -0.14
SDC3-201ENST00000336798 INF2Q27J81 1249 aa14.18□□□□□ -0.14
SDC3-201ENST00000336798 WDR44Q5JSH3 913 aa14.18□□□□□ -0.14
SDC3-201ENST00000336798 SEL1L2Q5TEA6 688 aa14.18□□□□□ -0.14
SDC3-201ENST00000336798 KSR2Q6VAB6 950 aa14.18□□□□□ -0.14
SDC3-201ENST00000336798 PSMD6Q15008 389 aa14.18□□□□□ -0.14
SDC3-201ENST00000336798 CCDC14Q49A88 953 aa14.18□□□□□ -0.14
SDC3-201ENST00000336798 TBC1D7Q9P0N9 293 aa14.18□□□□□ -0.14
SDC3-201ENST00000336798 MBD4O95243 580 aa14.18□□□□□ -0.14
SDC3-201ENST00000336798 TYRO3Q06418 890 aa14.18□□□□□ -0.14
SDC3-201ENST00000336798 CADPS2Q86UW7 1296 aa14.18□□□□□ -0.14
SDC3-201ENST00000336798 RABEP2Q9H5N1 569 aa14.18□□□□□ -0.14
SDC3-201ENST00000336798 KAT6BQ8WYB5 2073 aa14.17□□□□□ -0.14
SDC3-201ENST00000336798 HPDP32754 393 aaPredicted RBP14.17□□□□□ -0.14
SDC3-201ENST00000336798 TNNQ9UQP3 1299 aa14.17□□□□□ -0.14
SDC3-201ENST00000336798 ADGRL1O94910 1474 aa14.17□□□□□ -0.14
SDC3-201ENST00000336798 A0A1B0GVL5 298 aa14.17□□□□□ -0.14
SDC3-201ENST00000336798 CALML3P27482 149 aa14.17□□□□□ -0.14
SDC3-201ENST00000336798 FAM200AQ8TCP9 573 aa14.17□□□□□ -0.14
SDC3-201ENST00000336798 EPSTI1Q96J88 318 aa14.17□□□□□ -0.14
SDC3-201ENST00000336798 SPOPO43791 374 aa14.17□□□□□ -0.14
SDC3-201ENST00000336798 CREB3L3Q68CJ9 461 aa14.17□□□□□ -0.14
SDC3-201ENST00000336798 FAM204AQ9H8W3 233 aa14.17□□□□□ -0.14
SDC3-201ENST00000336798 PICK1Q9NRD5 415 aa14.17□□□□□ -0.14
SDC3-201ENST00000336798 USTQ9Y2C2 406 aa14.17□□□□□ -0.14
SDC3-201ENST00000336798 DISP3Q9P2K9 1392 aa14.17□□□□□ -0.14
SDC3-201ENST00000336798 NOL3O60936 208 aaKnown RBP14.17□□□□□ -0.14
SDC3-201ENST00000336798 RAD51AP2Q09MP3 1159 aa14.17□□□□□ -0.14
SDC3-201ENST00000336798 HOMEZQ8IX15 550 aa14.17□□□□□ -0.14
SDC3-201ENST00000336798 GMNNO75496 209 aa14.17□□□□□ -0.14
SDC3-201ENST00000336798 BIRC2Q13490 618 aa14.17□□□□□ -0.14
SDC3-201ENST00000336798 USH1GQ495M9 461 aa14.17□□□□□ -0.14
SDC3-201ENST00000336798 LONRF3Q496Y0 759 aa14.17□□□□□ -0.14
SDC3-201ENST00000336798 SEPT14Q6ZU15 432 aa14.17□□□□□ -0.14
SDC3-201ENST00000336798 TTC14Q96N46 770 aa14.17□□□□□ -0.14
SDC3-201ENST00000336798 NACA2Q9H009 215 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms