RNA–Protein interactions for RNA: ENST00000336180.6

LIMK1-201, Transcript of LIM domain kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMK1, Length 3,219 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-201ENST00000336180 EPB41L4AQ9HCS5 686 aaPredicted RBP14.84□□□□□ -0.03
LIMK1-201ENST00000336180 A0A087WWV3 80 aa14.84□□□□□ -0.03
LIMK1-201ENST00000336180 TRIM37O94972 964 aa14.84□□□□□ -0.03
LIMK1-201ENST00000336180 BRD2P25440 801 aaKnown RBP14.84□□□□□ -0.03
LIMK1-201ENST00000336180 DYNLL1P63167 89 aaKnown RBP14.84□□□□□ -0.03
LIMK1-201ENST00000336180 EXOSC10Q01780 885 aaKnown RBP14.84□□□□□ -0.03
LIMK1-201ENST00000336180 MICU3Q86XE3 530 aa14.83□□□□□ -0.03
LIMK1-201ENST00000336180 NSUN7Q8NE18 718 aaKnown RBP14.83□□□□□ -0.03
LIMK1-201ENST00000336180 FBXW7Q969H0 707 aa14.83□□□□□ -0.03
LIMK1-201ENST00000336180 NEDD4P46934 1319 aa14.83□□□□□ -0.03
LIMK1-201ENST00000336180 LIG1P18858 919 aa14.83□□□□□ -0.04
LIMK1-201ENST00000336180 PTMSP20962 102 aa14.83□□□□□ -0.04
LIMK1-201ENST00000336180 RFC4P35249 363 aa14.83□□□□□ -0.04
LIMK1-201ENST00000336180 FNBP4Q8N3X1 1017 aaPredicted RBP14.83□□□□□ -0.04
LIMK1-201ENST00000336180 PRDM1O75626 825 aa14.83□□□□□ -0.04
LIMK1-201ENST00000336180 CYP7A1P22680 504 aa14.83□□□□□ -0.04
LIMK1-201ENST00000336180 SAMD1Q6SPF0 538 aaPredicted RBP14.83□□□□□ -0.04
LIMK1-201ENST00000336180 MINPP1Q9UNW1 487 aa14.83□□□□□ -0.04
LIMK1-201ENST00000336180 SLC4A4Q9Y6R1 1079 aa14.83□□□□□ -0.04
LIMK1-201ENST00000336180 POLR3DP05423 398 aaPredicted RBP14.82□□□□□ -0.04
LIMK1-201ENST00000336180 ADD1P35611 737 aaKnown RBP14.82□□□□□ -0.04
LIMK1-201ENST00000336180 TDO2P48775 406 aa14.82□□□□□ -0.04
LIMK1-201ENST00000336180 PHKBQ93100 1093 aa14.82□□□□□ -0.04
LIMK1-201ENST00000336180 FBXO3Q9UK99 471 aa14.82□□□□□ -0.04
LIMK1-201ENST00000336180 ZFYP08048 801 aaPredicted RBP14.82□□□□□ -0.04
LIMK1-201ENST00000336180 ARID4AP29374 1257 aaPredicted RBP14.82□□□□□ -0.04
LIMK1-201ENST00000336180 CKAP2LQ8IYA6 745 aa14.82□□□□□ -0.04
LIMK1-201ENST00000336180 STRBPQ96SI9 672 aaKnown RBP14.82□□□□□ -0.04
LIMK1-201ENST00000336180 NAPBQ9H115 298 aa14.82□□□□□ -0.04
LIMK1-201ENST00000336180 TCRBV5S4A2TA0A5A2 114 aa14.81□□□□□ -0.04
LIMK1-201ENST00000336180 MAP3K12Q12852 859 aa14.81□□□□□ -0.04
LIMK1-201ENST00000336180 ERCC4Q92889 916 aaPredicted RBP14.81□□□□□ -0.04
LIMK1-201ENST00000336180 AK7Q96M32 723 aa14.81□□□□□ -0.04
LIMK1-201ENST00000336180 CDC5LQ99459 802 aaKnown RBP14.81□□□□□ -0.04
LIMK1-201ENST00000336180 SRCAPQ6ZRS2 3230 aa14.81□□□□□ -0.04
LIMK1-201ENST00000336180 NFXL1Q6ZNB6 911 aa14.81□□□□□ -0.04
LIMK1-201ENST00000336180 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.81□□□□□ -0.04
LIMK1-201ENST00000336180 QTRT2Q9H974 415 aaKnown RBP14.81□□□□□ -0.04
LIMK1-201ENST00000336180 UQCRFS1P1P0C7P4 283 aa14.81□□□□□ -0.04
LIMK1-201ENST00000336180 SPEF2Q9C093 1822 aa14.8□□□□□ -0.04
LIMK1-201ENST00000336180 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.8□□□□□ -0.04
LIMK1-201ENST00000336180 RPS6KA4O75676 772 aa14.8□□□□□ -0.04
LIMK1-201ENST00000336180 MBD3O95983 291 aa14.8□□□□□ -0.04
LIMK1-201ENST00000336180 NCOA7Q8NI08 942 aa14.8□□□□□ -0.04
LIMK1-201ENST00000336180 SPATA32Q96LK8 384 aa14.8□□□□□ -0.04
LIMK1-201ENST00000336180 NLRP3Q96P20 1036 aa14.8□□□□□ -0.04
LIMK1-201ENST00000336180 CTNNA3Q9UI47 895 aa14.8□□□□□ -0.04
LIMK1-201ENST00000336180 PFKFB2O60825 505 aa14.8□□□□□ -0.04
LIMK1-201ENST00000336180 ZNF445P59923 1031 aa14.8□□□□□ -0.04
LIMK1-201ENST00000336180 LRSAM1Q6UWE0 723 aa14.8□□□□□ -0.04
LIMK1-201ENST00000336180 MB21D2Q8IYB1 491 aaPredicted RBP14.8□□□□□ -0.04
LIMK1-201ENST00000336180 IFNL3Q8IZI9 196 aa14.8□□□□□ -0.04
LIMK1-201ENST00000336180 MCM5P33992 734 aa14.79□□□□□ -0.04
LIMK1-201ENST00000336180 TRDNQ13061 729 aa14.79□□□□□ -0.04
LIMK1-201ENST00000336180 NFIXQ14938 502 aa14.79□□□□□ -0.04
LIMK1-201ENST00000336180 LRRFIP1Q32MZ4 808 aaKnown RBP14.79□□□□□ -0.04
LIMK1-201ENST00000336180 NARFQ9UHQ1 456 aa14.79□□□□□ -0.04
LIMK1-201ENST00000336180 RFX7Q2KHR2 1363 aa14.79□□□□□ -0.04
LIMK1-201ENST00000336180 hCG_1642624A0A1W2PR95 340 aa14.79□□□□□ -0.04
LIMK1-201ENST00000336180 CPLX1O14810 134 aa14.79□□□□□ -0.04
LIMK1-201ENST00000336180 FDPSP14324 419 aaKnown RBP14.79□□□□□ -0.04
LIMK1-201ENST00000336180 RPS8P62241 208 aaKnown RBP14.79□□□□□ -0.04
LIMK1-201ENST00000336180 KRT85P78386 507 aa14.79□□□□□ -0.04
LIMK1-201ENST00000336180 TTF1Q15361 905 aaPredicted RBP14.79□□□□□ -0.04
LIMK1-201ENST00000336180 GOLGA6L4A6NEF3 574 aa14.79□□□□□ -0.04
LIMK1-201ENST00000336180 BICD2Q8TD16 824 aa14.79□□□□□ -0.04
LIMK1-201ENST00000336180 TRAPPC3LQ5T215 181 aa14.78□□□□□ -0.04
LIMK1-201ENST00000336180 ZSCAN25Q6NSZ9 544 aa14.78□□□□□ -0.04
LIMK1-201ENST00000336180 PIBF1Q8WXW3 757 aa14.78□□□□□ -0.04
LIMK1-201ENST00000336180 TRIM44Q96DX7 344 aaPredicted RBP14.78□□□□□ -0.04
LIMK1-201ENST00000336180 FAM84BQ96KN1 310 aaPredicted RBP14.78□□□□□ -0.04
LIMK1-201ENST00000336180 ANKIB1Q9P2G1 1089 aa14.78□□□□□ -0.04
LIMK1-201ENST00000336180 MTMR7Q9Y216 660 aa14.78□□□□□ -0.04
LIMK1-201ENST00000336180 GSG1L2A8MUP6 293 aa14.78□□□□□ -0.04
LIMK1-201ENST00000336180 PRDX5P30044 214 aa14.78□□□□□ -0.04
LIMK1-201ENST00000336180 UBE2HP62256 183 aa14.78□□□□□ -0.04
LIMK1-201ENST00000336180 CERKQ8TCT0 537 aa14.78□□□□□ -0.04
LIMK1-201ENST00000336180 HPS5Q9UPZ3 1129 aa14.78□□□□□ -0.04
LIMK1-201ENST00000336180 ATP6V1DQ9Y5K8 247 aa14.78□□□□□ -0.04
LIMK1-201ENST00000336180 WNK3Q9BYP7 1800 aa14.78□□□□□ -0.04
LIMK1-201ENST00000336180 HMGB1P09429 215 aaKnown RBP14.77□□□□□ -0.04
LIMK1-201ENST00000336180 ORC3Q9UBD5 711 aaPredicted RBP14.77□□□□□ -0.04
LIMK1-201ENST00000336180 AKAP11Q9UKA4 1901 aa14.77□□□□□ -0.04
LIMK1-201ENST00000336180 PDCP20941 246 aa14.77□□□□□ -0.04
LIMK1-201ENST00000336180 CDC27P30260 824 aa14.77□□□□□ -0.04
LIMK1-201ENST00000336180 RESTQ13127 1097 aa14.77□□□□□ -0.04
LIMK1-201ENST00000336180 UBE3CQ15386 1083 aa14.77□□□□□ -0.04
LIMK1-201ENST00000336180 OLFM4Q6UX06 510 aa14.77□□□□□ -0.04
LIMK1-201ENST00000336180 TSPY26PQ9H489 355 aa14.77□□□□□ -0.04
LIMK1-201ENST00000336180 ZSWIM5Q9P217 1185 aa14.77□□□□□ -0.04
LIMK1-201ENST00000336180 TPTE2Q6XPS3 522 aa14.77□□□□□ -0.05
LIMK1-201ENST00000336180 NUP133Q8WUM0 1156 aa14.77□□□□□ -0.05
LIMK1-201ENST00000336180 LEO1Q8WVC0 666 aaPredicted RBP14.77□□□□□ -0.05
LIMK1-201ENST00000336180 PGBD1Q96JS3 809 aa14.77□□□□□ -0.05
LIMK1-201ENST00000336180 AATFQ9NY61 560 aaKnown RBP eCLIP14.77□□□□□ -0.05
LIMK1-201ENST00000336180 DACT1Q9NYF0 836 aa14.77□□□□□ -0.05
LIMK1-201ENST00000336180 MYH3P11055 1940 aa14.77□□□□□ -0.05
LIMK1-201ENST00000336180 IFIT3O14879 490 aaKnown RBP14.76□□□□□ -0.05
LIMK1-201ENST00000336180 TMEM67Q5HYA8 995 aa14.76□□□□□ -0.05
LIMK1-201ENST00000336180 CLEC4GQ6UXB4 293 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms