RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 SHCBP1Q8NEM2 672 aa2.28□□□□□ -2.04
LINC00643-201ENST00000334389 MSANTD3Q96H12 275 aa2.28□□□□□ -2.04
LINC00643-201ENST00000334389 MPHOSPH9Q99550 1183 aa2.28□□□□□ -2.04
LINC00643-201ENST00000334389 THEGQ9P2T0 379 aa2.28□□□□□ -2.04
LINC00643-201ENST00000334389 CXCL11O14625 94 aa2.28□□□□□ -2.04
LINC00643-201ENST00000334389 BAIAP3O94812 1187 aa2.28□□□□□ -2.04
LINC00643-201ENST00000334389 BMP1P13497 986 aa2.28□□□□□ -2.04
LINC00643-201ENST00000334389 GTF2A2P52657 109 aa2.28□□□□□ -2.04
LINC00643-201ENST00000334389 UBXN2AP68543 259 aa2.28□□□□□ -2.04
LINC00643-201ENST00000334389 HSP90AB3PQ58FF7 597 aa2.28□□□□□ -2.04
LINC00643-201ENST00000334389 KANK4Q5T7N3 995 aaPredicted RBP2.28□□□□□ -2.04
LINC00643-201ENST00000334389 KRTAP5-3Q6L8H2 238 aa2.28□□□□□ -2.04
LINC00643-201ENST00000334389 TATDN1Q6P1N9 297 aa2.28□□□□□ -2.04
LINC00643-201ENST00000334389 CRIPAKQ8N1N5 446 aa2.28□□□□□ -2.04
LINC00643-201ENST00000334389 ABTB2Q8N961 1025 aa2.28□□□□□ -2.04
LINC00643-201ENST00000334389 NGDNQ8NEJ9 315 aaKnown RBP2.28□□□□□ -2.04
LINC00643-201ENST00000334389 SOCS4Q8WXH5 440 aa2.28□□□□□ -2.04
LINC00643-201ENST00000334389 PIGBQ92521 554 aa2.28□□□□□ -2.04
LINC00643-201ENST00000334389 WNK4Q96J92 1243 aa2.28□□□□□ -2.04
LINC00643-201ENST00000334389 POP1Q99575 1024 aaKnown RBP2.28□□□□□ -2.04
LINC00643-201ENST00000334389 PHF24Q9UPV7 400 aa2.28□□□□□ -2.04
LINC00643-201ENST00000334389 SCN10AQ9Y5Y9 1956 aa2.28□□□□□ -2.04
LINC00643-201ENST00000334389 CYP27B1O15528 508 aa2.27□□□□□ -2.05
LINC00643-201ENST00000334389 SGPL1O95470 568 aa2.27□□□□□ -2.05
LINC00643-201ENST00000334389 ASIC1P78348 528 aa2.27□□□□□ -2.05
LINC00643-201ENST00000334389 NBPF9Q3BBW0 867 aa2.27□□□□□ -2.05
LINC00643-201ENST00000334389 TMEM31Q5JXX7 168 aa2.27□□□□□ -2.05
LINC00643-201ENST00000334389 HDGFL2Q7Z4V5 671 aaPredicted RBP2.27□□□□□ -2.05
LINC00643-201ENST00000334389 CERS3Q8IU89 383 aa2.27□□□□□ -2.05
LINC00643-201ENST00000334389 NPAS3Q8IXF0 933 aa2.27□□□□□ -2.05
LINC00643-201ENST00000334389 ZNF34Q8IZ26 560 aa2.27□□□□□ -2.05
LINC00643-201ENST00000334389 SLC17A8Q8NDX2 589 aa2.27□□□□□ -2.05
LINC00643-201ENST00000334389 RBM17Q96I25 401 aaKnown RBP2.27□□□□□ -2.05
LINC00643-201ENST00000334389 EYA3Q99504 573 aa2.27□□□□□ -2.05
LINC00643-201ENST00000334389 ANKFY1Q9P2R3 1169 aa2.27□□□□□ -2.05
LINC00643-201ENST00000334389 PCDHA11Q9Y5I1 949 aa2.27□□□□□ -2.05
LINC00643-201ENST00000334389 KMT2BQ9UMN6 2715 aaPredicted RBP2.27□□□□□ -2.05
LINC00643-201ENST00000334389 POLR2AP24928 1970 aaKnown RBP2.27□□□□□ -2.05
LINC00643-201ENST00000334389 IRS1P35568 1242 aa2.27□□□□□ -2.05
LINC00643-201ENST00000334389 DPP6P42658 865 aa2.27□□□□□ -2.05
LINC00643-201ENST00000334389 HNRNPDQ14103 355 aaKnown RBP2.27□□□□□ -2.05
LINC00643-201ENST00000334389 SESTD1Q86VW0 696 aa2.27□□□□□ -2.05
LINC00643-201ENST00000334389 WWC1Q8IX03 1113 aa2.27□□□□□ -2.05
LINC00643-201ENST00000334389 C12orf42Q96LP6 360 aa2.27□□□□□ -2.05
LINC00643-201ENST00000334389 UTYO14607 1347 aa2.27□□□□□ -2.05
LINC00643-201ENST00000334389 PHLPP2Q6ZVD8 1323 aa2.27□□□□□ -2.05
LINC00643-201ENST00000334389 SPDYE5A6NIY4 337 aa2.27□□□□□ -2.05
LINC00643-201ENST00000334389 C5orf67F2Z3F1 127 aa2.27□□□□□ -2.05
LINC00643-201ENST00000334389 SEMA3FQ13275 785 aa2.27□□□□□ -2.05
LINC00643-201ENST00000334389 PRR5LQ6MZQ0 368 aa2.27□□□□□ -2.05
LINC00643-201ENST00000334389 PDZRN4Q6ZMN7 1036 aaPredicted RBP2.27□□□□□ -2.05
LINC00643-201ENST00000334389 DDX17Q92841 729 aaKnown RBP2.27□□□□□ -2.05
LINC00643-201ENST00000334389 FAM126AQ9BYI3 521 aaPredicted RBP2.27□□□□□ -2.05
LINC00643-201ENST00000334389 UPF3BQ9BZI7 483 aaKnown RBP2.27□□□□□ -2.05
LINC00643-201ENST00000334389 FAM13BQ9NYF5 915 aa2.27□□□□□ -2.05
LINC00643-201ENST00000334389 SRRDQ9UH36 339 aa2.27□□□□□ -2.05
LINC00643-201ENST00000334389 DNM1LO00429 736 aa2.26□□□□□ -2.05
LINC00643-201ENST00000334389 EGFRP00533 1210 aa2.26□□□□□ -2.05
LINC00643-201ENST00000334389 CAPNS1P04632 268 aa2.26□□□□□ -2.05
LINC00643-201ENST00000334389 PRR20EP86478 221 aa2.26□□□□□ -2.05
LINC00643-201ENST00000334389 PRR20CP86479 221 aa2.26□□□□□ -2.05
LINC00643-201ENST00000334389 PRR20DP86480 221 aa2.26□□□□□ -2.05
LINC00643-201ENST00000334389 PRR20BP86481 221 aa2.26□□□□□ -2.05
LINC00643-201ENST00000334389 PRR20AP86496 221 aa2.26□□□□□ -2.05
LINC00643-201ENST00000334389 KIF23Q02241 960 aaPredicted RBP2.26□□□□□ -2.05
LINC00643-201ENST00000334389 NHLH1Q02575 133 aa2.26□□□□□ -2.05
LINC00643-201ENST00000334389 MOGSQ13724 837 aa2.26□□□□□ -2.05
LINC00643-201ENST00000334389 ARMC9Q7Z3E5 817 aa2.26□□□□□ -2.05
LINC00643-201ENST00000334389 WAPLQ7Z5K2 1190 aa2.26□□□□□ -2.05
LINC00643-201ENST00000334389 PROCA1Q8NCQ7 364 aaPredicted RBP2.26□□□□□ -2.05
LINC00643-201ENST00000334389 RBM27Q9P2N5 1060 aaKnown RBP2.26□□□□□ -2.05
LINC00643-201ENST00000334389 EMSYQ7Z589 1322 aa2.26□□□□□ -2.05
LINC00643-201ENST00000334389 RNF225M0QZC1 329 aaPredicted RBP2.26□□□□□ -2.05
LINC00643-201ENST00000334389 LILRB5O75023 590 aa2.26□□□□□ -2.05
LINC00643-201ENST00000334389 GCLCP48506 637 aaPredicted RBP2.26□□□□□ -2.05
LINC00643-201ENST00000334389 KCNC4Q03721 635 aa2.26□□□□□ -2.05
LINC00643-201ENST00000334389 PPATQ06203 517 aa2.26□□□□□ -2.05
LINC00643-201ENST00000334389 NFX1Q12986 1120 aaKnown RBP2.26□□□□□ -2.05
LINC00643-201ENST00000334389 MAP2K5Q13163 448 aa2.26□□□□□ -2.05
LINC00643-201ENST00000334389 C2CD5Q86YS7 1000 aa2.26□□□□□ -2.05
LINC00643-201ENST00000334389 ZNF296Q8WUU4 475 aaPredicted RBP2.26□□□□□ -2.05
LINC00643-201ENST00000334389 KCTD12Q96CX2 325 aaKnown RBP2.26□□□□□ -2.05
LINC00643-201ENST00000334389 MS4A4AQ96JQ5 239 aa2.26□□□□□ -2.05
LINC00643-201ENST00000334389 PDGFDQ9GZP0 370 aaPredicted RBP2.26□□□□□ -2.05
LINC00643-201ENST00000334389 SLC52A2Q9HAB3 445 aa2.26□□□□□ -2.05
LINC00643-201ENST00000334389 FBXO3Q9UK99 471 aa2.26□□□□□ -2.05
LINC00643-201ENST00000334389 RWDD3Q9Y3V2 267 aa2.26□□□□□ -2.05
LINC00643-201ENST00000334389 MYH7P12883 1935 aa2.26□□□□□ -2.05
LINC00643-201ENST00000334389 MICAL3Q7RTP6 2002 aa2.26□□□□□ -2.05
LINC00643-201ENST00000334389 LOC730098B7Z3J9 87 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 SPTLC1O15269 473 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 SERPINB2P05120 415 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 MDM2Q00987 491 aaPredicted RBP2.25□□□□□ -2.05
LINC00643-201ENST00000334389 NFIXQ14938 502 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 PLEKHO1Q53GL0 409 aaPredicted RBP2.25□□□□□ -2.05
LINC00643-201ENST00000334389 ZNF697Q5TEC3 545 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 CCDC129Q6ZRS4 1044 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 ARHGAP27Q6ZUM4 889 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 LRP10Q7Z4F1 713 aa2.25□□□□□ -2.05
LINC00643-201ENST00000334389 PIK3R5Q8WYR1 880 aa2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms