RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 EPHA10Q5JZY3 1008 aa15.5■□□□□ 0.07
CCDC88C-201ENST00000331194 VSTM4Q8IW00 320 aa15.5■□□□□ 0.07
CCDC88C-201ENST00000331194 SBNO1A3KN83 1393 aa15.49■□□□□ 0.07
CCDC88C-201ENST00000331194 TUBB4AP04350 444 aa15.49■□□□□ 0.07
CCDC88C-201ENST00000331194 ICE2Q659A1 982 aa15.49■□□□□ 0.07
CCDC88C-201ENST00000331194 LLPHQ9BRT6 129 aaKnown RBP15.49■□□□□ 0.07
CCDC88C-201ENST00000331194 LZTFL1Q9NQ48 299 aa15.49■□□□□ 0.07
CCDC88C-201ENST00000331194 CARMIL3Q8ND23 1372 aa15.49■□□□□ 0.07
CCDC88C-201ENST00000331194 KIF28PB7ZC32 967 aa15.49■□□□□ 0.07
CCDC88C-201ENST00000331194 CCP110O43303 1012 aa15.49■□□□□ 0.07
CCDC88C-201ENST00000331194 ZSCAN12O43309 604 aa15.49■□□□□ 0.07
CCDC88C-201ENST00000331194 LEKR1Q6ZMV7 388 aa15.49■□□□□ 0.07
CCDC88C-201ENST00000331194 RABGGTAQ92696 567 aa15.49■□□□□ 0.07
CCDC88C-201ENST00000331194 MPHOSPH8Q99549 860 aa15.49■□□□□ 0.07
CCDC88C-201ENST00000331194 BAG1Q99933 345 aaPredicted RBP15.49■□□□□ 0.07
CCDC88C-201ENST00000331194 MRPL44Q9H9J2 332 aaKnown RBP15.49■□□□□ 0.07
CCDC88C-201ENST00000331194 MAP2K7O14733 419 aa15.48■□□□□ 0.07
CCDC88C-201ENST00000331194 CDC27P30260 824 aa15.48■□□□□ 0.07
CCDC88C-201ENST00000331194 TXLNAP40222 546 aa15.48■□□□□ 0.07
CCDC88C-201ENST00000331194 MPRIPQ6WCQ1 1025 aa15.48■□□□□ 0.07
CCDC88C-201ENST00000331194 GOLGA1Q92805 767 aa15.48■□□□□ 0.07
CCDC88C-201ENST00000331194 KCNG1Q9UIX4 513 aa15.48■□□□□ 0.07
CCDC88C-201ENST00000331194 GRM8O00222 908 aa15.48■□□□□ 0.07
CCDC88C-201ENST00000331194 PDE4BQ07343 736 aa15.48■□□□□ 0.07
CCDC88C-201ENST00000331194 EP400NLQ6ZTU2 488 aa15.48■□□□□ 0.07
CCDC88C-201ENST00000331194 ANKZF1Q9H8Y5 726 aa15.48■□□□□ 0.07
CCDC88C-201ENST00000331194 U3KPZ7 1027 aaPredicted RBP15.48■□□□□ 0.07
CCDC88C-201ENST00000331194 EIF3CLB5ME19 914 aaKnown RBP15.48■□□□□ 0.07
CCDC88C-201ENST00000331194 RHOXF2BP0C7M4 288 aa15.48■□□□□ 0.07
CCDC88C-201ENST00000331194 TTLL5Q6EMB2 1281 aa15.48■□□□□ 0.07
CCDC88C-201ENST00000331194 EIF3CQ99613 913 aaKnown RBP15.48■□□□□ 0.07
CCDC88C-201ENST00000331194 RHOXF2Q9BQY4 288 aa15.48■□□□□ 0.07
CCDC88C-201ENST00000331194 SETD1BQ9UPS6 1966 aaKnown RBP15.47■□□□□ 0.07
CCDC88C-201ENST00000331194 PLEKHG2Q9H7P9 1386 aa15.47■□□□□ 0.07
CCDC88C-201ENST00000331194 JCADQ9P266 1359 aa15.47■□□□□ 0.07
CCDC88C-201ENST00000331194 MYH15Q9Y2K3 1946 aa15.47■□□□□ 0.07
CCDC88C-201ENST00000331194 SALL1Q9NSC2 1324 aa15.47■□□□□ 0.07
CCDC88C-201ENST00000331194 A0A1W2PQ27 194 aa15.47■□□□□ 0.07
CCDC88C-201ENST00000331194 A0A1W2PQ64 194 aa15.47■□□□□ 0.07
CCDC88C-201ENST00000331194 A0A1W2PQD8 194 aa15.47■□□□□ 0.07
CCDC88C-201ENST00000331194 HOXC9P31274 260 aa15.47■□□□□ 0.07
CCDC88C-201ENST00000331194 E2F4Q16254 413 aa15.47■□□□□ 0.07
CCDC88C-201ENST00000331194 BEND6Q5SZJ8 279 aaPredicted RBP15.47■□□□□ 0.07
CCDC88C-201ENST00000331194 AXDND1Q5T1B0 1012 aaPredicted RBP15.47■□□□□ 0.07
CCDC88C-201ENST00000331194 PROSER2Q86WR7 435 aaPredicted RBP15.47■□□□□ 0.07
CCDC88C-201ENST00000331194 ABCB6Q9NP58 842 aa15.47■□□□□ 0.07
CCDC88C-201ENST00000331194 BTBD11A6QL63 1104 aa15.47■□□□□ 0.07
CCDC88C-201ENST00000331194 FOXN1O15353 648 aa15.47■□□□□ 0.07
CCDC88C-201ENST00000331194 ARHGAP6O43182 974 aa15.47■□□□□ 0.07
CCDC88C-201ENST00000331194 TFCP2Q12800 502 aa15.47■□□□□ 0.07
CCDC88C-201ENST00000331194 MCMDC2Q4G0Z9 681 aa15.47■□□□□ 0.07
CCDC88C-201ENST00000331194 DBNDD2Q9BQY9 259 aa15.47■□□□□ 0.07
CCDC88C-201ENST00000331194 AKAP2Q9Y2D5 859 aa15.47■□□□□ 0.07
CCDC88C-201ENST00000331194 JRKLQ9Y4A0 524 aa15.47■□□□□ 0.07
CCDC88C-201ENST00000331194 N4BP2Q86UW6 1770 aaPredicted RBP15.47■□□□□ 0.07
CCDC88C-201ENST00000331194 PLEKHG3A1L390 1219 aa15.46■□□□□ 0.07
CCDC88C-201ENST00000331194 PSEN1P49768 467 aa15.46■□□□□ 0.07
CCDC88C-201ENST00000331194 FOXP4Q8IVH2 680 aaPredicted RBP15.46■□□□□ 0.07
CCDC88C-201ENST00000331194 STK11IPQ8N1F8 1099 aa15.46■□□□□ 0.07
CCDC88C-201ENST00000331194 CLIC6Q96NY7 704 aa15.46■□□□□ 0.07
CCDC88C-201ENST00000331194 CHMP4BP1P59074 171 aa15.46■□□□□ 0.07
CCDC88C-201ENST00000331194 EXOSC10Q01780 885 aaKnown RBP15.46■□□□□ 0.07
CCDC88C-201ENST00000331194 MYL5Q02045 173 aa15.46■□□□□ 0.07
CCDC88C-201ENST00000331194 KSR2Q6VAB6 950 aa15.46■□□□□ 0.07
CCDC88C-201ENST00000331194 TC2NQ8N9U0 490 aa15.46■□□□□ 0.07
CCDC88C-201ENST00000331194 AIFM3Q96NN9 605 aa15.46■□□□□ 0.07
CCDC88C-201ENST00000331194 GEMIN8Q9NWZ8 242 aaKnown RBP15.46■□□□□ 0.07
CCDC88C-201ENST00000331194 PSD3Q9NYI0 1048 aa15.46■□□□□ 0.07
CCDC88C-201ENST00000331194 CCDC151A5D8V7 595 aa15.46■□□□□ 0.06
CCDC88C-201ENST00000331194 E7EWF7 191 aa15.46■□□□□ 0.06
CCDC88C-201ENST00000331194 TTC31Q49AM3 519 aaPredicted RBP15.46■□□□□ 0.06
CCDC88C-201ENST00000331194 SPECC1Q5M775 1068 aa15.46■□□□□ 0.06
CCDC88C-201ENST00000331194 MYSM1Q5VVJ2 828 aa15.46■□□□□ 0.06
CCDC88C-201ENST00000331194 IKBKBO14920 756 aa15.45■□□□□ 0.06
CCDC88C-201ENST00000331194 CCDC102AQ96A19 550 aa15.45■□□□□ 0.06
CCDC88C-201ENST00000331194 SIRT1Q96EB6 747 aa15.45■□□□□ 0.06
CCDC88C-201ENST00000331194 C8orf76Q96K31 380 aa15.45■□□□□ 0.06
CCDC88C-201ENST00000331194 SOWAHDA6NJG2 315 aa15.45■□□□□ 0.06
CCDC88C-201ENST00000331194 BMP6P22004 513 aa15.45■□□□□ 0.06
CCDC88C-201ENST00000331194 TRMT44Q8IYL2 757 aaKnown RBP15.45■□□□□ 0.06
CCDC88C-201ENST00000331194 DBF4Q9UBU7 674 aaPredicted RBP15.45■□□□□ 0.06
CCDC88C-201ENST00000331194 A0A1B0GUL7 405 aa15.44■□□□□ 0.06
CCDC88C-201ENST00000331194 ABL1P00519 1130 aa15.44■□□□□ 0.06
CCDC88C-201ENST00000331194 SYKP43405 635 aa15.44■□□□□ 0.06
CCDC88C-201ENST00000331194 HAND2P61296 217 aa15.44■□□□□ 0.06
CCDC88C-201ENST00000331194 ATL3Q6DD88 541 aa15.44■□□□□ 0.06
CCDC88C-201ENST00000331194 LRRC31Q6UY01 552 aa15.44■□□□□ 0.06
CCDC88C-201ENST00000331194 SYNE3Q6ZMZ3 975 aa15.44■□□□□ 0.06
CCDC88C-201ENST00000331194 GPATCH11Q8N954 259 aa15.44■□□□□ 0.06
CCDC88C-201ENST00000331194 KCNG4Q8TDN1 519 aa15.44■□□□□ 0.06
CCDC88C-201ENST00000331194 CPLX3Q8WVH0 158 aa15.44■□□□□ 0.06
CCDC88C-201ENST00000331194 TECPR2O15040 1411 aa15.44■□□□□ 0.06
CCDC88C-201ENST00000331194 ZNF827Q17R98 1081 aa15.44■□□□□ 0.06
CCDC88C-201ENST00000331194 IQUBQ8NA54 791 aa15.44■□□□□ 0.06
CCDC88C-201ENST00000331194 PHF8Q9UPP1 1060 aa15.43■□□□□ 0.06
CCDC88C-201ENST00000331194 CBFA2T2O43439 604 aa15.43■□□□□ 0.06
CCDC88C-201ENST00000331194 CUTAO60888 179 aa15.43■□□□□ 0.06
CCDC88C-201ENST00000331194 MAGEA9P43362 315 aa15.43■□□□□ 0.06
CCDC88C-201ENST00000331194 VSNL1P62760 191 aa15.43■□□□□ 0.06
CCDC88C-201ENST00000331194 JAKMIP3Q5VZ66 844 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms