RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 TNFAIP1Q13829 316 aa24.33■■□□□ 1.49
LIME1-201ENST00000309546 SUPT20HL1Q3ZLR7 823 aa24.33■■□□□ 1.49
LIME1-201ENST00000309546 NBPF12Q5TAG4 269 aaPredicted RBP24.33■■□□□ 1.49
LIME1-201ENST00000309546 LPIN2Q92539 896 aa24.33■■□□□ 1.49
LIME1-201ENST00000309546 PA2G4Q9UQ80 394 aaKnown RBP24.33■■□□□ 1.49
LIME1-201ENST00000309546 BCAR3O75815 825 aa24.32■■□□□ 1.48
LIME1-201ENST00000309546 CIAO1O76071 339 aa24.32■■□□□ 1.48
LIME1-201ENST00000309546 ATP2B3Q16720 1220 aa24.32■■□□□ 1.48
LIME1-201ENST00000309546 LDLRAD1Q5T700 205 aa24.32■■□□□ 1.48
LIME1-201ENST00000309546 INTS3Q68E01 1043 aaKnown RBP24.32■■□□□ 1.48
LIME1-201ENST00000309546 MCOLN1Q9GZU1 580 aa24.32■■□□□ 1.48
LIME1-201ENST00000309546 CEP126Q9P2H0 1117 aa24.32■■□□□ 1.48
LIME1-201ENST00000309546 FBXO3Q9UK99 471 aa24.32■■□□□ 1.48
LIME1-201ENST00000309546 TCP10L2B9ZVM9 353 aa24.31■■□□□ 1.48
LIME1-201ENST00000309546 IPO8O15397 1037 aaKnown RBP24.31■■□□□ 1.48
LIME1-201ENST00000309546 TEKT1Q969V4 418 aa24.31■■□□□ 1.48
LIME1-201ENST00000309546 TNNQ9UQP3 1299 aa24.31■■□□□ 1.48
LIME1-201ENST00000309546 OTOFQ9HC10 1997 aa24.31■■□□□ 1.48
LIME1-201ENST00000309546 GNAI3P08754 354 aa24.3■■□□□ 1.48
LIME1-201ENST00000309546 TRIM27P14373 513 aa24.3■■□□□ 1.48
LIME1-201ENST00000309546 MAP3K11Q16584 847 aa24.3■■□□□ 1.48
LIME1-201ENST00000309546 CCDC85CA6NKD9 419 aa24.29■■□□□ 1.48
LIME1-201ENST00000309546 IL15P40933 162 aaPredicted RBP24.29■■□□□ 1.48
LIME1-201ENST00000309546 SREBF2Q12772 1141 aa24.29■■□□□ 1.48
LIME1-201ENST00000309546 SPRYD7Q5W111 196 aa24.29■■□□□ 1.48
LIME1-201ENST00000309546 CLUAP1Q96AJ1 413 aa24.29■■□□□ 1.48
LIME1-201ENST00000309546 SLC10A4Q96EP9 437 aa24.29■■□□□ 1.48
LIME1-201ENST00000309546 CLMNQ96JQ2 1002 aa24.29■■□□□ 1.48
LIME1-201ENST00000309546 MAST3O60307 1309 aa24.29■■□□□ 1.48
LIME1-201ENST00000309546 IREB2P48200 963 aaKnown RBP24.28■■□□□ 1.48
LIME1-201ENST00000309546 TNNI2P48788 182 aa24.28■■□□□ 1.48
LIME1-201ENST00000309546 HDLBPQ00341 1268 aaKnown RBP24.28■■□□□ 1.48
LIME1-201ENST00000309546 ATF7IPQ6VMQ6 1270 aa24.28■■□□□ 1.48
LIME1-201ENST00000309546 SRGAP3O43295 1099 aa24.27■■□□□ 1.48
LIME1-201ENST00000309546 TBC1D8O95759 1140 aa24.27■■□□□ 1.48
LIME1-201ENST00000309546 CACNB3P54284 484 aa24.27■■□□□ 1.48
LIME1-201ENST00000309546 TMEM39BQ9GZU3 492 aa24.27■■□□□ 1.48
LIME1-201ENST00000309546 COPRSQ9NQ92 184 aa24.27■■□□□ 1.48
LIME1-201ENST00000309546 TM4SF4P48230 202 aa24.26■■□□□ 1.47
LIME1-201ENST00000309546 CDAN1Q8IWY9 1227 aa24.26■■□□□ 1.47
LIME1-201ENST00000309546 WDR66Q8TBY9 1149 aa24.26■■□□□ 1.47
LIME1-201ENST00000309546 GNL3LQ9NVN8 582 aaKnown RBP24.26■■□□□ 1.47
LIME1-201ENST00000309546 TMOD2Q9NZR1 351 aa24.26■■□□□ 1.47
LIME1-201ENST00000309546 SUGT1Q9Y2Z0 365 aa24.26■■□□□ 1.47
LIME1-201ENST00000309546 USP2O75604 605 aaPredicted RBP24.25■■□□□ 1.47
LIME1-201ENST00000309546 WNK4Q96J92 1243 aa24.25■■□□□ 1.47
LIME1-201ENST00000309546 ZDHHC15Q96MV8 337 aa24.25■■□□□ 1.47
LIME1-201ENST00000309546 PHKA1P46020 1223 aa24.24■■□□□ 1.47
LIME1-201ENST00000309546 ANKRD13AQ8IZ07 590 aa24.24■■□□□ 1.47
LIME1-201ENST00000309546 TEPSINQ96N21 525 aa24.24■■□□□ 1.47
LIME1-201ENST00000309546 LAMB1P07942 1786 aa24.24■■□□□ 1.47
LIME1-201ENST00000309546 MANSC4A6NHS7 340 aaPredicted RBP24.23■■□□□ 1.47
LIME1-201ENST00000309546 ZBTB48P10074 688 aaPredicted RBP24.23■■□□□ 1.47
LIME1-201ENST00000309546 ADORA1P30542 326 aa24.23■■□□□ 1.47
LIME1-201ENST00000309546 ZKSCAN2Q63HK3 967 aa24.23■■□□□ 1.47
LIME1-201ENST00000309546 GNAI2P04899 355 aa24.22■■□□□ 1.47
LIME1-201ENST00000309546 APOBEC3HQ6NTF7 200 aaKnown RBP24.22■■□□□ 1.47
LIME1-201ENST00000309546 UNCXA6NJT0 531 aa24.21■■□□□ 1.47
LIME1-201ENST00000309546 PRDX5P30044 214 aa24.21■■□□□ 1.47
LIME1-201ENST00000309546 MTX1Q13505 466 aa24.21■■□□□ 1.47
LIME1-201ENST00000309546 HHIPL2Q6UWX4 724 aa24.21■■□□□ 1.47
LIME1-201ENST00000309546 TMEM57Q8N5G2 664 aa24.21■■□□□ 1.47
LIME1-201ENST00000309546 MRIQ9BWK5 157 aa24.21■■□□□ 1.47
LIME1-201ENST00000309546 ELP3Q9H9T3 547 aa24.21■■□□□ 1.47
LIME1-201ENST00000309546 DENND2AQ9ULE3 1009 aa24.21■■□□□ 1.47
LIME1-201ENST00000309546 TFCP2Q12800 502 aa24.2■■□□□ 1.46
LIME1-201ENST00000309546 DIXDC1Q155Q3 683 aa24.2■■□□□ 1.46
LIME1-201ENST00000309546 CCDC102BQ68D86 513 aa24.2■■□□□ 1.46
LIME1-201ENST00000309546 CTU1Q7Z7A3 348 aaKnown RBP24.2■■□□□ 1.46
LIME1-201ENST00000309546 ZNF296Q8WUU4 475 aaPredicted RBP24.2■■□□□ 1.46
LIME1-201ENST00000309546 SEMA3EO15041 775 aa24.19■■□□□ 1.46
LIME1-201ENST00000309546 LDHBP07195 334 aaKnown RBP24.19■■□□□ 1.46
LIME1-201ENST00000309546 GJA5P36382 358 aa24.19■■□□□ 1.46
LIME1-201ENST00000309546 TIMM10P62072 90 aa24.19■■□□□ 1.46
LIME1-201ENST00000309546 AK9Q5TCS8 1911 aa24.19■■□□□ 1.46
LIME1-201ENST00000309546 A0A1B0GUL7 405 aa24.18■■□□□ 1.46
LIME1-201ENST00000309546 GPR25O00155 361 aa24.18■■□□□ 1.46
LIME1-201ENST00000309546 IFNL1Q8IU54 200 aa24.18■■□□□ 1.46
LIME1-201ENST00000309546 OPTNQ96CV9 577 aa24.18■■□□□ 1.46
LIME1-201ENST00000309546 AKAP2Q9Y2D5 859 aa24.18■■□□□ 1.46
LIME1-201ENST00000309546 DAGLAQ9Y4D2 1042 aa24.18■■□□□ 1.46
LIME1-201ENST00000309546 MYH2Q9UKX2 1941 aa24.18■■□□□ 1.46
LIME1-201ENST00000309546 PNMA6EA0A0J9YXQ4 647 aa24.17■■□□□ 1.46
LIME1-201ENST00000309546 ALDH1A1P00352 501 aa24.17■■□□□ 1.46
LIME1-201ENST00000309546 INHBEP58166 350 aa24.17■■□□□ 1.46
LIME1-201ENST00000309546 FAM83AQ86UY5 434 aa24.17■■□□□ 1.46
LIME1-201ENST00000309546 FTSJ3Q8IY81 847 aaKnown RBP24.17■■□□□ 1.46
LIME1-201ENST00000309546 CSADQ9Y600 493 aa24.17■■□□□ 1.46
LIME1-201ENST00000309546 SALL1Q9NSC2 1324 aa24.16■■□□□ 1.46
LIME1-201ENST00000309546 IGF2BP3O00425 579 aaKnown RBP eCLIP24.16■■□□□ 1.46
LIME1-201ENST00000309546 MAP3K9P80192 1104 aa24.16■■□□□ 1.46
LIME1-201ENST00000309546 VGLL4Q14135 290 aa24.16■■□□□ 1.46
LIME1-201ENST00000309546 FKBP1CQ5VVH2 108 aa24.16■■□□□ 1.46
LIME1-201ENST00000309546 PPP1R3FQ6ZSY5 799 aaPredicted RBP24.16■■□□□ 1.46
LIME1-201ENST00000309546 XAGE2Q96GT9 111 aa24.16■■□□□ 1.46
LIME1-201ENST00000309546 NEUROD6Q96NK8 337 aa24.16■■□□□ 1.46
LIME1-201ENST00000309546 R3HDMLQ9H3Y0 253 aa24.16■■□□□ 1.46
LIME1-201ENST00000309546 ZBED9Q6R2W3 1325 aa24.15■■□□□ 1.46
LIME1-201ENST00000309546 RASGRF1Q13972 1273 aa24.15■■□□□ 1.46
LIME1-201ENST00000309546 DDX55Q8NHQ9 600 aaKnown RBP eCLIP24.15■■□□□ 1.463e-7■■□□□ 11.4
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms