RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 ZGPATQ8N5A5 531 aaKnown RBP11.66□□□□□ -0.54
CLIP1-201ENST00000302528 MAP3K2Q9Y2U5 619 aa11.66□□□□□ -0.54
CLIP1-201ENST00000302528 BUB1BO60566 1050 aaPredicted RBP11.66□□□□□ -0.54
CLIP1-201ENST00000302528 LMOD1P29536 600 aaPredicted RBP11.66□□□□□ -0.54
CLIP1-201ENST00000302528 KLHL40Q2TBA0 621 aa11.66□□□□□ -0.54
CLIP1-201ENST00000302528 NBPF6Q5VWK0 638 aa11.66□□□□□ -0.54
CLIP1-201ENST00000302528 NECAB1Q8N987 351 aa11.66□□□□□ -0.54
CLIP1-201ENST00000302528 SSH1Q8WYL5 1049 aa11.66□□□□□ -0.54
CLIP1-201ENST00000302528 NBPF4Q96M43 638 aa11.66□□□□□ -0.54
CLIP1-201ENST00000302528 TSGA10Q9BZW7 698 aa11.66□□□□□ -0.54
CLIP1-201ENST00000302528 DNAJC25Q9H1X3 360 aa11.66□□□□□ -0.54
CLIP1-201ENST00000302528 TRIM75PA6NK02 468 aa11.65□□□□□ -0.54
CLIP1-201ENST00000302528 EXOC5O00471 708 aa11.65□□□□□ -0.54
CLIP1-201ENST00000302528 SP4Q02446 784 aa11.65□□□□□ -0.54
CLIP1-201ENST00000302528 KIFAP3Q92845 792 aa11.65□□□□□ -0.54
CLIP1-201ENST00000302528 CCDC122Q5T0U0 273 aa11.65□□□□□ -0.54
CLIP1-201ENST00000302528 TEX13AQ9BXU3 409 aaPredicted RBP11.65□□□□□ -0.54
CLIP1-201ENST00000302528 CLSTN2Q9H4D0 955 aa11.65□□□□□ -0.54
CLIP1-201ENST00000302528 BIN2Q9UBW5 565 aaPredicted RBP11.65□□□□□ -0.54
CLIP1-201ENST00000302528 ATP5J2-PTCD1G3V325 749 aa11.65□□□□□ -0.54
CLIP1-201ENST00000302528 PPFIA2O75334 1257 aa11.65□□□□□ -0.54
CLIP1-201ENST00000302528 STX17P56962 302 aa11.65□□□□□ -0.54
CLIP1-201ENST00000302528 TRPC3Q13507 836 aa11.65□□□□□ -0.54
CLIP1-201ENST00000302528 AFAP1Q8N556 730 aa11.65□□□□□ -0.54
CLIP1-201ENST00000302528 FNBP1Q96RU3 617 aa11.65□□□□□ -0.54
CLIP1-201ENST00000302528 TUBBP07437 444 aa11.65□□□□□ -0.54
CLIP1-201ENST00000302528 CLNS1AP54105 237 aaKnown RBP11.65□□□□□ -0.54
CLIP1-201ENST00000302528 DIXDC1Q155Q3 683 aa11.65□□□□□ -0.54
CLIP1-201ENST00000302528 B4GALNT4Q76KP1 1039 aa11.65□□□□□ -0.54
CLIP1-201ENST00000302528 HDXQ7Z353 690 aa11.65□□□□□ -0.54
CLIP1-201ENST00000302528 SRGAP1Q7Z6B7 1085 aa11.65□□□□□ -0.54
CLIP1-201ENST00000302528 PHLDB2Q86SQ0 1253 aa11.65□□□□□ -0.54
CLIP1-201ENST00000302528 ARHGAP24Q8N264 748 aa11.65□□□□□ -0.54
CLIP1-201ENST00000302528 RRP36Q96EU6 259 aaKnown RBP11.65□□□□□ -0.54
CLIP1-201ENST00000302528 HARSP12081 509 aaKnown RBP11.64□□□□□ -0.55
CLIP1-201ENST00000302528 RPL13P26373 211 aaKnown RBP11.64□□□□□ -0.55
CLIP1-201ENST00000302528 CCDC152Q4G0S7 254 aa11.64□□□□□ -0.55
CLIP1-201ENST00000302528 SH2D4BQ5SQS7 431 aa11.64□□□□□ -0.55
CLIP1-201ENST00000302528 ZNF365Q70YC5 407 aa11.64□□□□□ -0.55
CLIP1-201ENST00000302528 NBPF5PQ86XG9 351 aaPredicted RBP11.64□□□□□ -0.55
CLIP1-201ENST00000302528 NUDT16Q96DE0 195 aaKnown RBP11.64□□□□□ -0.55
CLIP1-201ENST00000302528 RASSF4Q9H2L5 321 aa11.64□□□□□ -0.55
CLIP1-201ENST00000302528 VCX3AQ9NNX9 186 aa11.64□□□□□ -0.55
CLIP1-201ENST00000302528 RTL1A6NKG5 1358 aa11.64□□□□□ -0.55
CLIP1-201ENST00000302528 LRRC2Q9BYS8 371 aa11.64□□□□□ -0.55
CLIP1-201ENST00000302528 CCT6AP40227 531 aaKnown RBP11.64□□□□□ -0.55
CLIP1-201ENST00000302528 UBE3BQ7Z3V4 1068 aa11.64□□□□□ -0.55
CLIP1-201ENST00000302528 VSIG1Q86XK7 387 aa11.64□□□□□ -0.55
CLIP1-201ENST00000302528 NGLY1Q96IV0 654 aa11.64□□□□□ -0.55
CLIP1-201ENST00000302528 CNPY2Q9Y2B0 182 aa11.64□□□□□ -0.55
CLIP1-201ENST00000302528 FRMD4BQ9Y2L6 1034 aa11.64□□□□□ -0.55
CLIP1-201ENST00000302528 ACTN4O43707 911 aaKnown RBP11.64□□□□□ -0.55
CLIP1-201ENST00000302528 PPME1Q9Y570 386 aa11.64□□□□□ -0.55
CLIP1-201ENST00000302528 CALML3P27482 149 aa11.64□□□□□ -0.55
CLIP1-201ENST00000302528 A0A1B0GUL7 405 aa11.63□□□□□ -0.55
CLIP1-201ENST00000302528 HGSO14964 777 aaPredicted RBP11.63□□□□□ -0.55
CLIP1-201ENST00000302528 TBC1D9Q6ZT07 1266 aa11.63□□□□□ -0.55
CLIP1-201ENST00000302528 VEZTQ9HBM0 779 aa11.63□□□□□ -0.55
CLIP1-201ENST00000302528 NOD1Q9Y239 953 aa11.63□□□□□ -0.55
CLIP1-201ENST00000302528 SMIM24O75264 130 aa11.63□□□□□ -0.55
CLIP1-201ENST00000302528 TRIM6Q9C030 488 aaPredicted RBP11.63□□□□□ -0.55
CLIP1-201ENST00000302528 DACT1Q9NYF0 836 aa11.63□□□□□ -0.55
CLIP1-201ENST00000302528 CCDC125Q86Z20 511 aa11.63□□□□□ -0.55
CLIP1-201ENST00000302528 NACA2Q9H009 215 aa11.63□□□□□ -0.55
CLIP1-201ENST00000302528 ARHGAP5Q13017 1502 aa11.63□□□□□ -0.55
CLIP1-201ENST00000302528 CCDC38Q502W7 563 aa11.63□□□□□ -0.55
CLIP1-201ENST00000302528 TNFAIP3P21580 790 aa11.62□□□□□ -0.55
CLIP1-201ENST00000302528 HHATQ5VTY9 493 aa11.62□□□□□ -0.55
CLIP1-201ENST00000302528 NAA16Q6N069 864 aaPredicted RBP11.62□□□□□ -0.55
CLIP1-201ENST00000302528 SYT10Q6XYQ8 523 aa11.62□□□□□ -0.55
CLIP1-201ENST00000302528 TAOK1Q7L7X3 1001 aa11.62□□□□□ -0.55
CLIP1-201ENST00000302528 C16orf71Q8IYS4 520 aaPredicted RBP11.62□□□□□ -0.55
CLIP1-201ENST00000302528 NSMCE1Q8WV22 266 aa11.62□□□□□ -0.55
CLIP1-201ENST00000302528 I3L4J1 428 aa11.62□□□□□ -0.55
CLIP1-201ENST00000302528 LIN9Q5TKA1 542 aa11.62□□□□□ -0.55
CLIP1-201ENST00000302528 TSPYL2Q9H2G4 693 aaPredicted RBP11.62□□□□□ -0.55
CLIP1-201ENST00000302528 CCDC61Q9Y6R9 512 aa11.62□□□□□ -0.55
CLIP1-201ENST00000302528 PTPRCP08575 1304 aa11.62□□□□□ -0.55
CLIP1-201ENST00000302528 ERBINQ96RT1 1412 aa11.62□□□□□ -0.55
CLIP1-201ENST00000302528 NDUFAB1O14561 156 aa11.62□□□□□ -0.55
CLIP1-201ENST00000302528 KRT2P35908 639 aa11.62□□□□□ -0.55
CLIP1-201ENST00000302528 AFAP1L1Q8TED9 768 aa11.62□□□□□ -0.55
CLIP1-201ENST00000302528 SLC52A1Q9NWF4 448 aa11.62□□□□□ -0.55
CLIP1-201ENST00000302528 SPTLC2O15270 562 aa11.62□□□□□ -0.55
CLIP1-201ENST00000302528 ZBTB24O43167 697 aaPredicted RBP11.62□□□□□ -0.55
CLIP1-201ENST00000302528 RARSP54136 660 aaKnown RBP11.62□□□□□ -0.55
CLIP1-201ENST00000302528 HVCN1Q96D96 273 aa11.62□□□□□ -0.55
CLIP1-201ENST00000302528 IQSEC3Q9UPP2 1182 aaPredicted RBP11.62□□□□□ -0.55
CLIP1-201ENST00000302528 CFAP43Q8NDM7 1665 aa11.62□□□□□ -0.55
CLIP1-201ENST00000302528 IQGAP2Q13576 1575 aa11.62□□□□□ -0.55
CLIP1-201ENST00000302528 EPB41P11171 864 aaKnown RBP11.62□□□□□ -0.55
CLIP1-201ENST00000302528 INPP1P49441 399 aa11.62□□□□□ -0.55
CLIP1-201ENST00000302528 RBBP5Q15291 538 aaKnown RBP11.62□□□□□ -0.55
CLIP1-201ENST00000302528 NOC2LQ9Y3T9 749 aaKnown RBP11.62□□□□□ -0.55
CLIP1-201ENST00000302528 NSD3Q9BZ95 1437 aa11.62□□□□□ -0.55
CLIP1-201ENST00000302528 MAN1A1P33908 653 aa11.61□□□□□ -0.55
CLIP1-201ENST00000302528 UTP11Q9Y3A2 253 aaKnown RBP11.61□□□□□ -0.55
CLIP1-201ENST00000302528 TSHZ3Q63HK5 1081 aa11.61□□□□□ -0.55
CLIP1-201ENST00000302528 TMX3Q96JJ7 454 aa11.61□□□□□ -0.55
CLIP1-201ENST00000302528 HAUS2Q9NVX0 235 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms