RNA–Protein interactions for RNA: ENST00000299847.6

CHRFAM7A-201, Transcript of CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHRFAM7A, Length 6,220 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRFAM7A-201ENST00000299847 VPS16Q9H269 839 aa15.31■□□□□ 0.04
CHRFAM7A-201ENST00000299847 NCOA5Q9HCD5 579 aaKnown RBP15.31■□□□□ 0.04
CHRFAM7A-201ENST00000299847 ATP6V0A2Q9Y487 856 aa15.31■□□□□ 0.04
CHRFAM7A-201ENST00000299847 GJA3Q9Y6H8 435 aa15.31■□□□□ 0.04
CHRFAM7A-201ENST00000299847 FANCAO15360 1455 aa15.31■□□□□ 0.04
CHRFAM7A-201ENST00000299847 LDHBP07195 334 aaKnown RBP15.31■□□□□ 0.04
CHRFAM7A-201ENST00000299847 FNBP4Q8N3X1 1017 aaPredicted RBP15.31■□□□□ 0.04
CHRFAM7A-201ENST00000299847 BMP15O95972 392 aa15.3■□□□□ 0.04
CHRFAM7A-201ENST00000299847 CCDC65Q8IXS2 484 aa15.3■□□□□ 0.04
CHRFAM7A-201ENST00000299847 TIGD1Q96MW7 591 aa15.3■□□□□ 0.04
CHRFAM7A-201ENST00000299847 KRT86O43790 486 aa15.3■□□□□ 0.04
CHRFAM7A-201ENST00000299847 CCNT1O60563 726 aaKnown RBP15.3■□□□□ 0.04
CHRFAM7A-201ENST00000299847 ERCC5P28715 1186 aaPredicted RBP15.3■□□□□ 0.04
CHRFAM7A-201ENST00000299847 USP37Q86T82 979 aa15.3■□□□□ 0.04
CHRFAM7A-201ENST00000299847 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.3■□□□□ 0.04
CHRFAM7A-201ENST00000299847 GNAQP50148 359 aa15.3■□□□□ 0.04
CHRFAM7A-201ENST00000299847 KRT83P78385 493 aa15.3■□□□□ 0.04
CHRFAM7A-201ENST00000299847 FCHSD1Q86WN1 690 aa15.3■□□□□ 0.04
CHRFAM7A-201ENST00000299847 PHACTR3Q96KR7 559 aa15.3■□□□□ 0.04
CHRFAM7A-201ENST00000299847 PPP1R21Q6ZMI0 780 aa15.3■□□□□ 0.04
CHRFAM7A-201ENST00000299847 OPA1O60313 960 aa15.3■□□□□ 0.04
CHRFAM7A-201ENST00000299847 G2E3Q7L622 706 aa15.3■□□□□ 0.04
CHRFAM7A-201ENST00000299847 TBC1D7Q9P0N9 293 aa15.3■□□□□ 0.04
CHRFAM7A-201ENST00000299847 PARP1P09874 1014 aaKnown RBP15.29■□□□□ 0.04
CHRFAM7A-201ENST00000299847 OTUD7BQ6GQQ9 843 aa15.29■□□□□ 0.04
CHRFAM7A-201ENST00000299847 PIK3AP1Q6ZUJ8 805 aa15.29■□□□□ 0.04
CHRFAM7A-201ENST00000299847 PLEKHM2Q8IWE5 1019 aa15.29■□□□□ 0.04
CHRFAM7A-201ENST00000299847 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.29■□□□□ 0.04
CHRFAM7A-201ENST00000299847 ZC3H12CQ9C0D7 883 aaKnown RBP15.29■□□□□ 0.04
CHRFAM7A-201ENST00000299847 TIMM10P62072 90 aa15.29■□□□□ 0.04
CHRFAM7A-201ENST00000299847 C17orf53Q8N3J3 647 aaPredicted RBP15.29■□□□□ 0.04
CHRFAM7A-201ENST00000299847 FAM89AQ96GI7 184 aa15.29■□□□□ 0.04
CHRFAM7A-201ENST00000299847 MYL10Q9BUA6 226 aa15.29■□□□□ 0.04
CHRFAM7A-201ENST00000299847 PLEKHA4Q9H4M7 779 aa15.29■□□□□ 0.04
CHRFAM7A-201ENST00000299847 CFAP58Q5T655 872 aa15.29■□□□□ 0.04
CHRFAM7A-201ENST00000299847 PARP3Q9Y6F1 533 aa15.29■□□□□ 0.04
CHRFAM7A-201ENST00000299847 ALDH1L1O75891 902 aa15.29■□□□□ 0.04
CHRFAM7A-201ENST00000299847 ARHGAP45Q92619 1136 aa15.29■□□□□ 0.04
CHRFAM7A-201ENST00000299847 SEC62Q99442 399 aaKnown RBP15.29■□□□□ 0.04
CHRFAM7A-201ENST00000299847 CCDC121Q6ZUS5 278 aa15.29■□□□□ 0.04
CHRFAM7A-201ENST00000299847 BICDL2A1A5D9 508 aa15.28■□□□□ 0.04
CHRFAM7A-201ENST00000299847 CHMLP26374 656 aa15.28■□□□□ 0.04
CHRFAM7A-201ENST00000299847 FAM173BQ6P4H8 233 aa15.28■□□□□ 0.04
CHRFAM7A-201ENST00000299847 MAK16Q9BXY0 300 aaKnown RBP15.28■□□□□ 0.04
CHRFAM7A-201ENST00000299847 GTF2A1P52655 376 aaPredicted RBP15.28■□□□□ 0.04
CHRFAM7A-201ENST00000299847 SPAG1Q07617 926 aa15.28■□□□□ 0.04
CHRFAM7A-201ENST00000299847 POLKQ9UBT6 870 aa15.28■□□□□ 0.04
CHRFAM7A-201ENST00000299847 UBAP1LF5GYI3 381 aa15.28■□□□□ 0.04
CHRFAM7A-201ENST00000299847 HPDP32754 393 aaPredicted RBP15.28■□□□□ 0.04
CHRFAM7A-201ENST00000299847 CTDSPL2Q05D32 466 aa15.28■□□□□ 0.04
CHRFAM7A-201ENST00000299847 PRKG1Q13976 671 aa15.28■□□□□ 0.04
CHRFAM7A-201ENST00000299847 CAVIN2O95810 425 aa15.28■□□□□ 0.04
CHRFAM7A-201ENST00000299847 LMBR1Q8WVP7 490 aa15.28■□□□□ 0.04
CHRFAM7A-201ENST00000299847 RTCBQ9Y3I0 505 aaKnown RBP15.28■□□□□ 0.04
CHRFAM7A-201ENST00000299847 RALGAPBQ86X10 1494 aa15.28■□□□□ 0.04
CHRFAM7A-201ENST00000299847 RPRD2Q5VT52 1461 aaKnown RBP15.28■□□□□ 0.04
CHRFAM7A-201ENST00000299847 CCDC169A6NNP5 214 aa15.28■□□□□ 0.04
CHRFAM7A-201ENST00000299847 RAD51AP2Q09MP3 1159 aa15.28■□□□□ 0.04
CHRFAM7A-201ENST00000299847 CCDC122Q5T0U0 273 aa15.28■□□□□ 0.04
CHRFAM7A-201ENST00000299847 CCDC77Q9BR77 488 aa15.28■□□□□ 0.04
CHRFAM7A-201ENST00000299847 hCG_1642624A0A1W2PR95 340 aa15.27■□□□□ 0.04
CHRFAM7A-201ENST00000299847 PRDM1O75626 825 aa15.27■□□□□ 0.04
CHRFAM7A-201ENST00000299847 IL2RBP14784 551 aa15.27■□□□□ 0.04
CHRFAM7A-201ENST00000299847 BIRC3Q13489 604 aa15.27■□□□□ 0.04
CHRFAM7A-201ENST00000299847 DHX32Q7L7V1 743 aaKnown RBP15.27■□□□□ 0.04
CHRFAM7A-201ENST00000299847 ZKSCAN5Q9Y2L8 839 aa15.27■□□□□ 0.04
CHRFAM7A-201ENST00000299847 CPLX4Q7Z7G2 160 aa15.27■□□□□ 0.04
CHRFAM7A-201ENST00000299847 NOC4LQ9BVI4 516 aaKnown RBP15.27■□□□□ 0.04
CHRFAM7A-201ENST00000299847 NYXQ9GZU5 481 aa15.27■□□□□ 0.04
CHRFAM7A-201ENST00000299847 TNRQ92752 1358 aa15.27■□□□□ 0.04
CHRFAM7A-201ENST00000299847 TRAF5O00463 557 aa15.27■□□□□ 0.03
CHRFAM7A-201ENST00000299847 AGTPBP1Q9UPW5 1226 aa15.27■□□□□ 0.03
CHRFAM7A-201ENST00000299847 TAF5LO75529 589 aa15.27■□□□□ 0.03
CHRFAM7A-201ENST00000299847 ANKS4BQ8N8V4 417 aa15.27■□□□□ 0.03
CHRFAM7A-201ENST00000299847 ZNF408Q9H9D4 720 aa15.27■□□□□ 0.03
CHRFAM7A-201ENST00000299847 GNPATO15228 680 aa15.27■□□□□ 0.03
CHRFAM7A-201ENST00000299847 U2AF2P26368 475 aaKnown RBP eCLIP15.27■□□□□ 0.03
CHRFAM7A-201ENST00000299847 LRRC45Q96CN5 670 aa15.27■□□□□ 0.03
CHRFAM7A-201ENST00000299847 HMGB2P26583 209 aaKnown RBP15.26■□□□□ 0.03
CHRFAM7A-201ENST00000299847 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.26■□□□□ 0.03
CHRFAM7A-201ENST00000299847 CALML3P27482 149 aa15.26■□□□□ 0.03
CHRFAM7A-201ENST00000299847 PRPHP41219 470 aa15.26■□□□□ 0.03
CHRFAM7A-201ENST00000299847 PPP2R5DQ14738 602 aa15.26■□□□□ 0.03
CHRFAM7A-201ENST00000299847 HS2ST1Q7LGA3 356 aa15.26■□□□□ 0.03
CHRFAM7A-201ENST00000299847 CADPS2Q86UW7 1296 aa15.26■□□□□ 0.03
CHRFAM7A-201ENST00000299847 SPATA24Q86W54 205 aa15.26■□□□□ 0.03
CHRFAM7A-201ENST00000299847 LEO1Q8WVC0 666 aaPredicted RBP15.26■□□□□ 0.03
CHRFAM7A-201ENST00000299847 THOC2Q8NI27 1593 aaKnown RBP15.26■□□□□ 0.03
CHRFAM7A-201ENST00000299847 GNAT2P19087 354 aa15.26■□□□□ 0.03
CHRFAM7A-201ENST00000299847 MAP7D1Q3KQU3 841 aa15.26■□□□□ 0.03
CHRFAM7A-201ENST00000299847 PSMB7Q99436 277 aa15.26■□□□□ 0.03
CHRFAM7A-201ENST00000299847 TRIM31Q9BZY9 425 aa15.26■□□□□ 0.03
CHRFAM7A-201ENST00000299847 FAM169AQ9Y6X4 670 aa15.26■□□□□ 0.03
CHRFAM7A-201ENST00000299847 SORBS3O60504 671 aa15.26■□□□□ 0.03
CHRFAM7A-201ENST00000299847 VAMP4O75379 141 aa15.26■□□□□ 0.03
CHRFAM7A-201ENST00000299847 PDE4DQ08499 809 aa15.26■□□□□ 0.03
CHRFAM7A-201ENST00000299847 TAF12Q16514 161 aa15.26■□□□□ 0.03
CHRFAM7A-201ENST00000299847 SV2BQ7L1I2 683 aa15.26■□□□□ 0.03
CHRFAM7A-201ENST00000299847 SMC6Q96SB8 1091 aa15.26■□□□□ 0.03
CHRFAM7A-201ENST00000299847 BAG1Q99933 345 aaPredicted RBP15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms