RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 STRBPQ96SI9 672 aaKnown RBP13.5□□□□□ -0.25
CUX1-202ENST00000292538 TSPY26PQ9H489 355 aa13.5□□□□□ -0.25
CUX1-202ENST00000292538 SENP2Q9HC62 589 aa13.5□□□□□ -0.25
CUX1-202ENST00000292538 MINPP1Q9UNW1 487 aa13.5□□□□□ -0.25
CUX1-202ENST00000292538 POLR3DP05423 398 aaPredicted RBP13.5□□□□□ -0.25
CUX1-202ENST00000292538 TPTE2Q6XPS3 522 aa13.5□□□□□ -0.25
CUX1-202ENST00000292538 ISY1Q9ULR0 285 aaKnown RBP13.5□□□□□ -0.25
CUX1-202ENST00000292538 PLCH1Q4KWH8 1693 aa13.49□□□□□ -0.25
CUX1-202ENST00000292538 RPS6KA4O75676 772 aa13.49□□□□□ -0.25
CUX1-202ENST00000292538 UBE3CQ15386 1083 aa13.49□□□□□ -0.25
CUX1-202ENST00000292538 CSPP1Q1MSJ5 1256 aa13.49□□□□□ -0.25
CUX1-202ENST00000292538 TRAPPC3LQ5T215 181 aa13.49□□□□□ -0.25
CUX1-202ENST00000292538 CYB5R4Q7L1T6 521 aa13.49□□□□□ -0.25
CUX1-202ENST00000292538 SMIM22K7EJ46 135 aa13.49□□□□□ -0.25
CUX1-202ENST00000292538 ANTXR2P58335 489 aa13.49□□□□□ -0.25
CUX1-202ENST00000292538 RPS8P62241 208 aaKnown RBP13.49□□□□□ -0.25
CUX1-202ENST00000292538 CKAP2LQ8IYA6 745 aa13.49□□□□□ -0.25
CUX1-202ENST00000292538 IFNL3Q8IZI9 196 aa13.49□□□□□ -0.25
CUX1-202ENST00000292538 ALDH8A1Q9H2A2 487 aaPredicted RBP13.49□□□□□ -0.25
CUX1-202ENST00000292538 RRAGDQ9NQL2 400 aaPredicted RBP13.49□□□□□ -0.25
CUX1-202ENST00000292538 ANKIB1Q9P2G1 1089 aa13.49□□□□□ -0.25
CUX1-202ENST00000292538 ADD1P35611 737 aaKnown RBP13.48□□□□□ -0.25
CUX1-202ENST00000292538 GPR101Q96P66 508 aaPredicted RBP13.48□□□□□ -0.25
CUX1-202ENST00000292538 GNL3LQ9NVN8 582 aaKnown RBP13.48□□□□□ -0.25
CUX1-202ENST00000292538 NARFQ9UHQ1 456 aa13.48□□□□□ -0.25
CUX1-202ENST00000292538 ABCC12Q96J65 1359 aa13.48□□□□□ -0.25
CUX1-202ENST00000292538 LIG1P18858 919 aa13.48□□□□□ -0.25
CUX1-202ENST00000292538 CCDC183Q5T5S1 534 aa13.48□□□□□ -0.25
CUX1-202ENST00000292538 NBPF3Q9H094 633 aa13.48□□□□□ -0.25
CUX1-202ENST00000292538 TCRBV5S4A2TA0A5A2 114 aa13.47□□□□□ -0.25
CUX1-202ENST00000292538 AEBP2Q6ZN18 517 aaPredicted RBP13.47□□□□□ -0.25
CUX1-202ENST00000292538 ADGRA1Q86SQ6 560 aa13.47□□□□□ -0.25
CUX1-202ENST00000292538 PHKBQ93100 1093 aa13.47□□□□□ -0.25
CUX1-202ENST00000292538 QTRT2Q9H974 415 aaKnown RBP13.47□□□□□ -0.25
CUX1-202ENST00000292538 ORC3Q9UBD5 711 aaPredicted RBP13.47□□□□□ -0.25
CUX1-202ENST00000292538 NEDD4P46934 1319 aa13.47□□□□□ -0.25
CUX1-202ENST00000292538 MYH14Q7Z406 1995 aaKnown RBP13.47□□□□□ -0.25
CUX1-202ENST00000292538 TRIM37O94972 964 aa13.47□□□□□ -0.25
CUX1-202ENST00000292538 DYNLL1P63167 89 aaKnown RBP13.47□□□□□ -0.25
CUX1-202ENST00000292538 TMEM67Q5HYA8 995 aa13.47□□□□□ -0.25
CUX1-202ENST00000292538 MB21D2Q8IYB1 491 aaPredicted RBP13.47□□□□□ -0.25
CUX1-202ENST00000292538 AIFM3Q96NN9 605 aa13.47□□□□□ -0.25
CUX1-202ENST00000292538 EPB41L4AQ9HCS5 686 aaPredicted RBP13.47□□□□□ -0.25
CUX1-202ENST00000292538 CYP2D7A0A087X1C5 515 aa13.46□□□□□ -0.25
CUX1-202ENST00000292538 PATL2C9JE40 543 aaKnown RBP13.46□□□□□ -0.25
CUX1-202ENST00000292538 IFIT3O14879 490 aaKnown RBP13.46□□□□□ -0.25
CUX1-202ENST00000292538 CMTR1Q8N1G2 835 aaKnown RBP13.46□□□□□ -0.25
CUX1-202ENST00000292538 FBXW7Q969H0 707 aa13.46□□□□□ -0.25
CUX1-202ENST00000292538 BSDC1Q9NW68 430 aaPredicted RBP13.46□□□□□ -0.25
CUX1-202ENST00000292538 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.46□□□□□ -0.25
CUX1-202ENST00000292538 PRDM1O75626 825 aa13.46□□□□□ -0.25
CUX1-202ENST00000292538 LEO1Q8WVC0 666 aaPredicted RBP13.46□□□□□ -0.25
CUX1-202ENST00000292538 ZNF512BQ96KM6 892 aaPredicted RBP13.46□□□□□ -0.25
CUX1-202ENST00000292538 NACAP1Q9BZK3 213 aa13.46□□□□□ -0.25
CUX1-202ENST00000292538 LRRC4BQ9NT99 713 aa13.46□□□□□ -0.25
CUX1-202ENST00000292538 DACT1Q9NYF0 836 aa13.46□□□□□ -0.25
CUX1-202ENST00000292538 COL22A1Q8NFW1 1626 aaPredicted RBP13.46□□□□□ -0.26
CUX1-202ENST00000292538 NUP98P52948 1817 aa13.46□□□□□ -0.26
CUX1-202ENST00000292538 MFSD6Q6ZSS7 791 aa13.46□□□□□ -0.26
CUX1-202ENST00000292538 NUP133Q8WUM0 1156 aa13.46□□□□□ -0.26
CUX1-202ENST00000292538 ZNF274Q96GC6 653 aaPredicted RBP13.46□□□□□ -0.26
CUX1-202ENST00000292538 FAM84BQ96KN1 310 aaPredicted RBP13.46□□□□□ -0.26
CUX1-202ENST00000292538 NYXQ9GZU5 481 aa13.46□□□□□ -0.26
CUX1-202ENST00000292538 ZSWIM5Q9P217 1185 aa13.46□□□□□ -0.26
CUX1-202ENST00000292538 KIF3AQ9Y496 699 aa13.46□□□□□ -0.26
CUX1-202ENST00000292538 GSG1L2A8MUP6 293 aa13.45□□□□□ -0.26
CUX1-202ENST00000292538 KCNA4P22459 653 aa13.45□□□□□ -0.26
CUX1-202ENST00000292538 METAP2P50579 478 aaKnown RBP eCLIP13.45□□□□□ -0.263e-6■■■■□ 24.7
CUX1-202ENST00000292538 HMGN5P82970 282 aaKnown RBP13.45□□□□□ -0.26
CUX1-202ENST00000292538 TXNRD3Q86VQ6 643 aa13.45□□□□□ -0.26
CUX1-202ENST00000292538 C8orf76Q96K31 380 aa13.45□□□□□ -0.26
CUX1-202ENST00000292538 SCAND2PQ9GZW5 306 aaPredicted RBP13.45□□□□□ -0.26
CUX1-202ENST00000292538 TCHHQ07283 1943 aa13.45□□□□□ -0.26
CUX1-202ENST00000292538 UBE2Q2LH0YL09 131 aa13.45□□□□□ -0.26
CUX1-202ENST00000292538 GNL2Q13823 731 aaKnown RBP13.45□□□□□ -0.26
CUX1-202ENST00000292538 ANGEL1Q9UNK9 670 aaKnown RBP13.45□□□□□ -0.26
CUX1-202ENST00000292538 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.44□□□□□ -0.26
CUX1-202ENST00000292538 MAGEB6P1A0A0J9YX57 407 aa13.44□□□□□ -0.26
CUX1-202ENST00000292538 PTMAP06454 111 aaKnown RBP13.44□□□□□ -0.26
CUX1-202ENST00000292538 FDPSP14324 419 aaKnown RBP13.44□□□□□ -0.26
CUX1-202ENST00000292538 ME1P48163 572 aa13.44□□□□□ -0.26
CUX1-202ENST00000292538 RESTQ13127 1097 aa13.44□□□□□ -0.26
CUX1-202ENST00000292538 SF3B3Q15393 1217 aaKnown RBP13.44□□□□□ -0.26
CUX1-202ENST00000292538 TMEM87AQ8NBN3 555 aa13.44□□□□□ -0.26
CUX1-202ENST00000292538 CNTNAP4Q9C0A0 1308 aa13.44□□□□□ -0.26
CUX1-202ENST00000292538 NAA16Q6N069 864 aaPredicted RBP13.44□□□□□ -0.26
CUX1-202ENST00000292538 SMARCC2Q8TAQ2 1214 aa13.44□□□□□ -0.26
CUX1-202ENST00000292538 LLPHQ9BRT6 129 aaKnown RBP13.44□□□□□ -0.26
CUX1-202ENST00000292538 AATFQ9NY61 560 aaKnown RBP eCLIP13.44□□□□□ -0.261e-6■■■■■ 27.8
CUX1-202ENST00000292538 HPS5Q9UPZ3 1129 aa13.44□□□□□ -0.26
CUX1-202ENST00000292538 CCDC69A6NI79 296 aa13.43□□□□□ -0.26
CUX1-202ENST00000292538 DHX16O60231 1041 aaKnown RBP13.43□□□□□ -0.26
CUX1-202ENST00000292538 CCDC173Q0VFZ6 552 aa13.43□□□□□ -0.26
CUX1-202ENST00000292538 NFIXQ14938 502 aa13.43□□□□□ -0.26
CUX1-202ENST00000292538 CNBD1Q8NA66 436 aa13.43□□□□□ -0.26
CUX1-202ENST00000292538 CERKQ8TCT0 537 aa13.43□□□□□ -0.26
CUX1-202ENST00000292538 NR1I2O75469 434 aa13.43□□□□□ -0.26
CUX1-202ENST00000292538 HIBADHP31937 336 aaKnown RBP13.43□□□□□ -0.26
CUX1-202ENST00000292538 USP28Q96RU2 1077 aa13.43□□□□□ -0.26
CUX1-202ENST00000292538 USP25Q9UHP3 1055 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms