RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 GPATCH11Q8N954 259 aa10.46□□□□□ -0.73
CUX1-201ENST00000292535 TIAM1Q13009 1591 aa10.46□□□□□ -0.73
CUX1-201ENST00000292535 GBP1P32455 592 aa10.46□□□□□ -0.73
CUX1-201ENST00000292535 NCAPGQ9BPX3 1015 aa10.46□□□□□ -0.73
CUX1-201ENST00000292535 NOD1Q9Y239 953 aa10.46□□□□□ -0.73
CUX1-201ENST00000292535 RAB11FIP4Q86YS3 637 aa10.46□□□□□ -0.73
CUX1-201ENST00000292535 PARP3Q9Y6F1 533 aa10.46□□□□□ -0.73
CUX1-201ENST00000292535 MSH6P52701 1360 aa10.46□□□□□ -0.73
CUX1-201ENST00000292535 TPRP12270 2363 aaKnown RBP10.46□□□□□ -0.73
CUX1-201ENST00000292535 DCAF17Q5H9S7 520 aaPredicted RBP10.46□□□□□ -0.74
CUX1-201ENST00000292535 SV2BQ7L1I2 683 aa10.46□□□□□ -0.74
CUX1-201ENST00000292535 TOM1O60784 492 aa10.46□□□□□ -0.74
CUX1-201ENST00000292535 PPFIBP2Q8ND30 876 aa10.46□□□□□ -0.74
CUX1-201ENST00000292535 MIPOL1Q8TD10 442 aa10.46□□□□□ -0.74
CUX1-201ENST00000292535 PPP1R9BQ96SB3 815 aa10.46□□□□□ -0.74
CUX1-201ENST00000292535 HCLS1P14317 486 aaPredicted RBP10.46□□□□□ -0.74
CUX1-201ENST00000292535 SARNPP82979 210 aaKnown RBP10.46□□□□□ -0.74
CUX1-201ENST00000292535 VPS52Q8N1B4 723 aa10.46□□□□□ -0.74
CUX1-201ENST00000292535 PODXL2Q9NZ53 605 aa10.46□□□□□ -0.74
CUX1-201ENST00000292535 DNAI1Q9UI46 699 aa10.46□□□□□ -0.74
CUX1-201ENST00000292535 RTCBQ9Y3I0 505 aaKnown RBP10.46□□□□□ -0.74
CUX1-201ENST00000292535 CASQ2O14958 399 aaPredicted RBP10.46□□□□□ -0.74
CUX1-201ENST00000292535 RBM26Q5T8P6 1007 aaKnown RBP10.46□□□□□ -0.74
CUX1-201ENST00000292535 GPHNQ9NQX3 736 aaPredicted RBP10.46□□□□□ -0.74
CUX1-201ENST00000292535 SCAF11Q99590 1463 aaKnown RBP10.46□□□□□ -0.74
CUX1-201ENST00000292535 HDXQ7Z353 690 aa10.45□□□□□ -0.74
CUX1-201ENST00000292535 FAM76AQ8TAV0 307 aa10.45□□□□□ -0.74
CUX1-201ENST00000292535 ZFP91Q96JP5 570 aaPredicted RBP10.45□□□□□ -0.74
CUX1-201ENST00000292535 M0QZ92 97 aa10.45□□□□□ -0.74
CUX1-201ENST00000292535 SATB1Q01826 763 aa10.45□□□□□ -0.74
CUX1-201ENST00000292535 ITIH3Q06033 890 aa10.45□□□□□ -0.74
CUX1-201ENST00000292535 NSMCE1Q8WV22 266 aa10.45□□□□□ -0.74
CUX1-201ENST00000292535 TBC1D32Q96NH3 1257 aa10.45□□□□□ -0.74
CUX1-201ENST00000292535 SNRKQ9NRH2 765 aa10.45□□□□□ -0.74
CUX1-201ENST00000292535 CALUO43852 315 aaPredicted RBP10.45□□□□□ -0.74
CUX1-201ENST00000292535 BIRC3Q13489 604 aa10.45□□□□□ -0.74
CUX1-201ENST00000292535 CROCCP2Q86T23 111 aa10.45□□□□□ -0.74
CUX1-201ENST00000292535 SH2D4BQ5SQS7 431 aa10.45□□□□□ -0.74
CUX1-201ENST00000292535 CCDC25Q86WR0 208 aa10.45□□□□□ -0.74
CUX1-201ENST00000292535 SEC62Q99442 399 aaKnown RBP10.45□□□□□ -0.74
CUX1-201ENST00000292535 NUF2Q9BZD4 464 aa10.45□□□□□ -0.74
CUX1-201ENST00000292535 PAG1Q9NWQ8 432 aa10.45□□□□□ -0.74
CUX1-201ENST00000292535 CETN3O15182 167 aa10.45□□□□□ -0.74
CUX1-201ENST00000292535 SYCE1Q8N0S2 351 aa10.45□□□□□ -0.74
CUX1-201ENST00000292535 BRF1Q92994 677 aa10.45□□□□□ -0.74
CUX1-201ENST00000292535 I3L4J1 428 aa10.45□□□□□ -0.74
CUX1-201ENST00000292535 GRM8O00222 908 aa10.45□□□□□ -0.74
CUX1-201ENST00000292535 KCNG1Q9UIX4 513 aa10.45□□□□□ -0.74
CUX1-201ENST00000292535 LUC7L2Q9Y383 392 aaKnown RBP10.45□□□□□ -0.74
CUX1-201ENST00000292535 TOP2BQ02880 1626 aa10.45□□□□□ -0.74
CUX1-201ENST00000292535 RALGAPBQ86X10 1494 aa10.45□□□□□ -0.74
CUX1-201ENST00000292535 B4GALNT4Q76KP1 1039 aa10.45□□□□□ -0.74
CUX1-201ENST00000292535 BRAPQ7Z569 592 aa10.45□□□□□ -0.74
CUX1-201ENST00000292535 SMIM23A6NLE4 172 aa10.44□□□□□ -0.74
CUX1-201ENST00000292535 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.44□□□□□ -0.748e-6■□□□□ 8.4
CUX1-201ENST00000292535 LPXNO60711 386 aa10.44□□□□□ -0.74
CUX1-201ENST00000292535 CNNM4Q6P4Q7 775 aa10.44□□□□□ -0.74
CUX1-201ENST00000292535 PICK1Q9NRD5 415 aa10.44□□□□□ -0.74
CUX1-201ENST00000292535 ADGRL1O94910 1474 aa10.44□□□□□ -0.74
CUX1-201ENST00000292535 NIP7Q9Y221 180 aaKnown RBP eCLIP10.44□□□□□ -0.74
CUX1-201ENST00000292535 TACC3Q9Y6A5 838 aa10.44□□□□□ -0.74
CUX1-201ENST00000292535 SLC9C2Q5TAH2 1124 aa10.44□□□□□ -0.74
CUX1-201ENST00000292535 FYB2Q5VWT5 728 aa10.44□□□□□ -0.74
CUX1-201ENST00000292535 MCM9Q9NXL9 1143 aa10.44□□□□□ -0.74
CUX1-201ENST00000292535 IQGAP2Q13576 1575 aa10.44□□□□□ -0.74
CUX1-201ENST00000292535 NPHP3Q7Z494 1330 aa10.44□□□□□ -0.74
CUX1-201ENST00000292535 IL2RBP14784 551 aa10.44□□□□□ -0.74
CUX1-201ENST00000292535 ERCC5P28715 1186 aaPredicted RBP10.44□□□□□ -0.74
CUX1-201ENST00000292535 F8W031 263 aaPredicted RBP10.44□□□□□ -0.74
CUX1-201ENST00000292535 HACE1Q8IYU2 909 aa10.44□□□□□ -0.74
CUX1-201ENST00000292535 NACA2Q9H009 215 aa10.44□□□□□ -0.74
CUX1-201ENST00000292535 ELP1O95163 1332 aa10.44□□□□□ -0.74
CUX1-201ENST00000292535 F6X3S4 739 aa10.44□□□□□ -0.74
CUX1-201ENST00000292535 PTGS1P23219 599 aa10.44□□□□□ -0.74
CUX1-201ENST00000292535 ARHGAP24Q8N264 748 aa10.44□□□□□ -0.74
CUX1-201ENST00000292535 ACTN4O43707 911 aaKnown RBP10.44□□□□□ -0.74
CUX1-201ENST00000292535 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.44□□□□□ -0.74
CUX1-201ENST00000292535 GOLGA6CA6NDK9 693 aa10.44□□□□□ -0.74
CUX1-201ENST00000292535 GOLGA6BA6NDN3 693 aa10.44□□□□□ -0.74
CUX1-201ENST00000292535 GOLGA6DP0CG33 693 aa10.44□□□□□ -0.74
CUX1-201ENST00000292535 TPTE2Q6XPS3 522 aa10.44□□□□□ -0.74
CUX1-201ENST00000292535 DHX32Q7L7V1 743 aaKnown RBP10.44□□□□□ -0.74
CUX1-201ENST00000292535 PPANQ9NQ55 473 aaKnown RBP10.44□□□□□ -0.74
CUX1-201ENST00000292535 GOLGA6AQ9NYA3 693 aa10.44□□□□□ -0.74
CUX1-201ENST00000292535 RAPGEF3O95398 923 aa10.44□□□□□ -0.74
CUX1-201ENST00000292535 YWHAEP62258 255 aaKnown RBP10.44□□□□□ -0.74
CUX1-201ENST00000292535 INTS8Q75QN2 995 aaKnown RBP10.44□□□□□ -0.74
CUX1-201ENST00000292535 LMNTD2Q8IXW0 634 aa10.43□□□□□ -0.74
CUX1-201ENST00000292535 GDPD2Q9HCC8 539 aa10.43□□□□□ -0.74
CUX1-201ENST00000292535 SPTLC2O15270 562 aa10.43□□□□□ -0.74
CUX1-201ENST00000292535 GIGYF1O75420 1035 aaPredicted RBP10.43□□□□□ -0.74
CUX1-201ENST00000292535 C10orf67Q8IYJ2 551 aa10.43□□□□□ -0.74
CUX1-201ENST00000292535 RIOK3O14730 519 aaKnown RBP10.43□□□□□ -0.74
CUX1-201ENST00000292535 TNFAIP3P21580 790 aa10.43□□□□□ -0.74
CUX1-201ENST00000292535 MUM1L1Q5H9M0 696 aa10.43□□□□□ -0.74
CUX1-201ENST00000292535 SPOPO43791 374 aa10.43□□□□□ -0.74
CUX1-201ENST00000292535 NBPF14Q5TI25 921 aa10.43□□□□□ -0.74
CUX1-201ENST00000292535 ATL3Q6DD88 541 aa10.43□□□□□ -0.74
CUX1-201ENST00000292535 LARP6Q9BRS8 491 aaKnown RBP10.43□□□□□ -0.74
CUX1-201ENST00000292535 BEGAINQ9BUH8 593 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms