RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 ATP6V0A2Q9Y487 856 aa12.14□□□□□ -0.47
UPF3B-201ENST00000276201 MRVI1Q9Y6F6 885 aa12.14□□□□□ -0.47
UPF3B-201ENST00000276201 CCDC88AQ3V6T2 1871 aa12.14□□□□□ -0.47
UPF3B-201ENST00000276201 LRRC37AA6NMS7 1700 aa12.14□□□□□ -0.47
UPF3B-201ENST00000276201 GRM8O00222 908 aa12.14□□□□□ -0.47
UPF3B-201ENST00000276201 FIBPO43427 364 aa12.14□□□□□ -0.47
UPF3B-201ENST00000276201 GLRX3O76003 335 aaKnown RBP12.14□□□□□ -0.47
UPF3B-201ENST00000276201 FKBP4Q02790 459 aaKnown RBP eCLIP12.14□□□□□ -0.47
UPF3B-201ENST00000276201 TYRO3Q06418 890 aa12.14□□□□□ -0.47
UPF3B-201ENST00000276201 CC2D2BQ6DHV5 1058 aa12.14□□□□□ -0.47
UPF3B-201ENST00000276201 CREBRFQ8IUR6 639 aa12.14□□□□□ -0.47
UPF3B-201ENST00000276201 TTLL11Q8NHH1 800 aa12.14□□□□□ -0.47
UPF3B-201ENST00000276201 TSC1Q92574 1164 aa12.14□□□□□ -0.47
UPF3B-201ENST00000276201 NUP62CLQ9H1M0 184 aa12.14□□□□□ -0.47
UPF3B-201ENST00000276201 DNM1Q05193 864 aaKnown RBP12.13□□□□□ -0.47
UPF3B-201ENST00000276201 NCBP1Q09161 790 aaKnown RBP12.13□□□□□ -0.47
UPF3B-201ENST00000276201 MTX1Q13505 466 aa12.13□□□□□ -0.47
UPF3B-201ENST00000276201 SCAND2PQ9GZW5 306 aaPredicted RBP12.13□□□□□ -0.47
UPF3B-201ENST00000276201 PDRG1Q9NUG6 133 aa12.13□□□□□ -0.47
UPF3B-201ENST00000276201 CTNNA3Q9UI47 895 aa12.13□□□□□ -0.47
UPF3B-201ENST00000276201 CYP46A1Q9Y6A2 500 aa12.13□□□□□ -0.47
UPF3B-201ENST00000276201 TIAM2Q8IVF5 1701 aa12.13□□□□□ -0.47
UPF3B-201ENST00000276201 SARM1Q6SZW1 724 aa12.13□□□□□ -0.47
UPF3B-201ENST00000276201 SP8Q8IXZ3 490 aa12.13□□□□□ -0.47
UPF3B-201ENST00000276201 MORC2Q9Y6X9 1032 aaPredicted RBP12.13□□□□□ -0.47
UPF3B-201ENST00000276201 RTL9Q8NET4 1388 aa12.13□□□□□ -0.47
UPF3B-201ENST00000276201 ZNF75DP51815 510 aa12.12□□□□□ -0.47
UPF3B-201ENST00000276201 PSMD1Q99460 953 aa12.12□□□□□ -0.47
UPF3B-201ENST00000276201 CLSTN2Q9H4D0 955 aa12.12□□□□□ -0.47
UPF3B-201ENST00000276201 GREM2Q9H772 168 aa12.12□□□□□ -0.47
UPF3B-201ENST00000276201 ZNF277Q9NRM2 450 aaPredicted RBP12.12□□□□□ -0.47
UPF3B-201ENST00000276201 C9orf78Q9NZ63 289 aaPredicted RBP12.12□□□□□ -0.47
UPF3B-201ENST00000276201 DDX41Q9UJV9 622 aaKnown RBP12.12□□□□□ -0.47
UPF3B-201ENST00000276201 ZHX1Q9UKY1 873 aaPredicted RBP12.12□□□□□ -0.47
UPF3B-201ENST00000276201 DICER1Q9UPY3 1922 aaKnown RBP12.12□□□□□ -0.47
UPF3B-201ENST00000276201 HIP1O00291 1037 aa12.12□□□□□ -0.47
UPF3B-201ENST00000276201 RPS8P62241 208 aaKnown RBP12.12□□□□□ -0.47
UPF3B-201ENST00000276201 FOXO4P98177 505 aa12.12□□□□□ -0.47
UPF3B-201ENST00000276201 ST3GAL1Q11201 340 aa12.12□□□□□ -0.47
UPF3B-201ENST00000276201 NECTIN1Q15223 517 aa12.12□□□□□ -0.47
UPF3B-201ENST00000276201 ANKRD1Q15327 319 aa12.12□□□□□ -0.47
UPF3B-201ENST00000276201 TMC4Q7Z404 712 aa12.12□□□□□ -0.47
UPF3B-201ENST00000276201 FAM53CQ9NYF3 392 aa12.12□□□□□ -0.47
UPF3B-201ENST00000276201 UTYO14607 1347 aa12.11□□□□□ -0.47
UPF3B-201ENST00000276201 CSF1RP07333 972 aa12.11□□□□□ -0.47
UPF3B-201ENST00000276201 NBPF7P0C2Y1 421 aaPredicted RBP12.11□□□□□ -0.47
UPF3B-201ENST00000276201 CASTP20810 708 aaKnown RBP12.11□□□□□ -0.47
UPF3B-201ENST00000276201 GRIPAP1Q4V328 841 aa12.11□□□□□ -0.47
UPF3B-201ENST00000276201 EPHA10Q5JZY3 1008 aa12.11□□□□□ -0.47
UPF3B-201ENST00000276201 TTC6Q86TZ1 520 aa12.11□□□□□ -0.47
UPF3B-201ENST00000276201 DUOX1Q9NRD9 1551 aa12.11□□□□□ -0.47
UPF3B-201ENST00000276201 LARGE1O95461 756 aa12.11□□□□□ -0.47
UPF3B-201ENST00000276201 PTGS1P23219 599 aa12.11□□□□□ -0.47
UPF3B-201ENST00000276201 SLFNL1Q499Z3 407 aa12.11□□□□□ -0.47
UPF3B-201ENST00000276201 CBX8Q9HC52 389 aa12.11□□□□□ -0.47
UPF3B-201ENST00000276201 PSMA5P28066 241 aa12.1□□□□□ -0.47
UPF3B-201ENST00000276201 TSGA10IPQ3SY00 556 aa12.1□□□□□ -0.47
UPF3B-201ENST00000276201 FOXD4L6Q3SYB3 417 aaPredicted RBP12.1□□□□□ -0.47
UPF3B-201ENST00000276201 ZSCAN25Q6NSZ9 544 aa12.1□□□□□ -0.47
UPF3B-201ENST00000276201 FOXD4L3Q6VB84 417 aaPredicted RBP12.1□□□□□ -0.47
UPF3B-201ENST00000276201 CCDC83Q8IWF9 413 aa12.1□□□□□ -0.47
UPF3B-201ENST00000276201 KAZALD1Q96I82 304 aa12.1□□□□□ -0.47
UPF3B-201ENST00000276201 SUCLG2Q96I99 432 aa12.1□□□□□ -0.47
UPF3B-201ENST00000276201 TMX4Q9H1E5 349 aaPredicted RBP12.1□□□□□ -0.47
UPF3B-201ENST00000276201 COL4A5P29400 1685 aa12.1□□□□□ -0.47
UPF3B-201ENST00000276201 ZC3H4Q9UPT8 1303 aaKnown RBP12.1□□□□□ -0.47
UPF3B-201ENST00000276201 LTBP1Q14766 1721 aa12.1□□□□□ -0.47
UPF3B-201ENST00000276201 SPEF2Q9C093 1822 aa12.1□□□□□ -0.47
UPF3B-201ENST00000276201 SURF6O75683 361 aaKnown RBP12.1□□□□□ -0.47
UPF3B-201ENST00000276201 IARSP41252 1262 aaKnown RBP12.1□□□□□ -0.47
UPF3B-201ENST00000276201 ANKRD18AQ8IVF6 992 aa12.1□□□□□ -0.47
UPF3B-201ENST00000276201 ZNF526Q8TF50 670 aaPredicted RBP12.1□□□□□ -0.47
UPF3B-201ENST00000276201 CDC5LQ99459 802 aaKnown RBP12.1□□□□□ -0.47
UPF3B-201ENST00000276201 RTFDC1Q9BY42 306 aaPredicted RBP12.1□□□□□ -0.47
UPF3B-201ENST00000276201 HDAC5Q9UQL6 1122 aa12.1□□□□□ -0.47
UPF3B-201ENST00000276201 ITGA6P23229 1130 aa12.09□□□□□ -0.47
UPF3B-201ENST00000276201 U2AF2P26368 475 aaKnown RBP eCLIP12.09□□□□□ -0.472e-7■□□□□ 9.2
UPF3B-201ENST00000276201 RNF20Q5VTR2 975 aa12.09□□□□□ -0.47
UPF3B-201ENST00000276201 DPP8Q6V1X1 898 aaPredicted RBP12.09□□□□□ -0.47
UPF3B-201ENST00000276201 CCDC186Q7Z3E2 898 aa12.09□□□□□ -0.47
UPF3B-201ENST00000276201 ERC1Q8IUD2 1116 aa12.09□□□□□ -0.47
UPF3B-201ENST00000276201 MPNDQ8N594 471 aa12.09□□□□□ -0.47
UPF3B-201ENST00000276201 MRFAP1L1Q96HT8 127 aa12.09□□□□□ -0.47
UPF3B-201ENST00000276201 TNMDQ9H2S6 317 aa12.09□□□□□ -0.47
UPF3B-201ENST00000276201 IL1RAPL2Q9NP60 686 aa12.09□□□□□ -0.47
UPF3B-201ENST00000276201 KIF2AO00139 706 aaPredicted RBP12.08□□□□□ -0.47
UPF3B-201ENST00000276201 ZKSCAN1P17029 563 aaPredicted RBP12.08□□□□□ -0.47
UPF3B-201ENST00000276201 GPSM2P81274 684 aa12.08□□□□□ -0.47
UPF3B-201ENST00000276201 ME3Q16798 604 aa12.08□□□□□ -0.47
UPF3B-201ENST00000276201 LMBR1LQ6UX01 489 aa12.08□□□□□ -0.47
UPF3B-201ENST00000276201 EVI5LQ96CN4 794 aa12.08□□□□□ -0.47
UPF3B-201ENST00000276201 GPATCH3Q96I76 525 aa12.08□□□□□ -0.47
UPF3B-201ENST00000276201 JAKMIP1Q96N16 626 aaKnown RBP12.08□□□□□ -0.47
UPF3B-201ENST00000276201 TNNT1P13805 278 aa12.08□□□□□ -0.48
UPF3B-201ENST00000276201 LIG1P18858 919 aa12.08□□□□□ -0.48
UPF3B-201ENST00000276201 LARP1BQ659C4 914 aaKnown RBP12.08□□□□□ -0.48
UPF3B-201ENST00000276201 SPC24Q8NBT2 197 aa12.08□□□□□ -0.48
UPF3B-201ENST00000276201 MAP4K1Q92918 833 aa12.08□□□□□ -0.48
UPF3B-201ENST00000276201 PODXL2Q9NZ53 605 aa12.08□□□□□ -0.48
UPF3B-201ENST00000276201 CTAGE5O15320 804 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms