RNA–Protein interactions for RNA: ENST00000261443.9

CSDE1-201, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-201ENST00000261443 RTEL1Q9NZ71 1219 aa8.3□□□□□ -1.08
CSDE1-201ENST00000261443 MED23Q9ULK4 1368 aa8.3□□□□□ -1.08
CSDE1-201ENST00000261443 TAF5LO75529 589 aa8.29□□□□□ -1.08
CSDE1-201ENST00000261443 CTDNEP1O95476 244 aa8.29□□□□□ -1.08
CSDE1-201ENST00000261443 LTKP29376 864 aa8.29□□□□□ -1.08
CSDE1-201ENST00000261443 MNAT1P51948 309 aa8.29□□□□□ -1.08
CSDE1-201ENST00000261443 CCT2P78371 535 aaKnown RBP8.29□□□□□ -1.08
CSDE1-201ENST00000261443 EP400NLQ6ZTU2 488 aa8.29□□□□□ -1.08
CSDE1-201ENST00000261443 ILDR1Q86SU0 546 aaPredicted RBP8.29□□□□□ -1.08
CSDE1-201ENST00000261443 MSANTD4Q8NCY6 345 aa8.29□□□□□ -1.08
CSDE1-201ENST00000261443 SEC62Q99442 399 aaKnown RBP8.29□□□□□ -1.08
CSDE1-201ENST00000261443 DESI2Q9BSY9 194 aa8.29□□□□□ -1.08
CSDE1-201ENST00000261443 CCDC8Q9H0W5 538 aaPredicted RBP8.29□□□□□ -1.08
CSDE1-201ENST00000261443 PIK3C2AO00443 1686 aa8.29□□□□□ -1.08
CSDE1-201ENST00000261443 NEDD4P46934 1319 aa8.29□□□□□ -1.08
CSDE1-201ENST00000261443 TMEM2Q9UHN6 1383 aa8.29□□□□□ -1.08
CSDE1-201ENST00000261443 ALDH1L1O75891 902 aa8.29□□□□□ -1.08
CSDE1-201ENST00000261443 ERLIN2O94905 339 aa8.29□□□□□ -1.08
CSDE1-201ENST00000261443 RHOXF2BP0C7M4 288 aa8.29□□□□□ -1.08
CSDE1-201ENST00000261443 LINC00301Q8NCQ3 95 aa8.29□□□□□ -1.08
CSDE1-201ENST00000261443 RHOXF2Q9BQY4 288 aa8.29□□□□□ -1.08
CSDE1-201ENST00000261443 IRX2Q9BZI1 471 aaPredicted RBP8.29□□□□□ -1.08
CSDE1-201ENST00000261443 GBP3Q9H0R5 595 aa8.29□□□□□ -1.08
CSDE1-201ENST00000261443 MED4Q9NPJ6 270 aa8.29□□□□□ -1.08
CSDE1-201ENST00000261443 DONSONQ9NYP3 566 aa8.29□□□□□ -1.08
CSDE1-201ENST00000261443 CLIC4Q9Y696 253 aa8.29□□□□□ -1.08
CSDE1-201ENST00000261443 ATP6V1AP38606 617 aa8.29□□□□□ -1.08
CSDE1-201ENST00000261443 ADKP55263 362 aaKnown RBP8.29□□□□□ -1.08
CSDE1-201ENST00000261443 USPL1Q5W0Q7 1092 aa8.29□□□□□ -1.08
CSDE1-201ENST00000261443 KCNG4Q8TDN1 519 aa8.29□□□□□ -1.08
CSDE1-201ENST00000261443 CCDC61Q9Y6R9 512 aa8.29□□□□□ -1.08
CSDE1-201ENST00000261443 PI4KAP2A4QPH2 592 aa8.28□□□□□ -1.08
CSDE1-201ENST00000261443 SPTLC2O15270 562 aa8.28□□□□□ -1.08
CSDE1-201ENST00000261443 EIF2S2P20042 333 aaKnown RBP8.28□□□□□ -1.08
CSDE1-201ENST00000261443 VSNL1P62760 191 aa8.28□□□□□ -1.08
CSDE1-201ENST00000261443 TUBB4BP68371 445 aa8.28□□□□□ -1.08
CSDE1-201ENST00000261443 BEND3Q5T5X7 828 aa8.28□□□□□ -1.08
CSDE1-201ENST00000261443 TTLL5Q6EMB2 1281 aa8.28□□□□□ -1.08
CSDE1-201ENST00000261443 PI4KAP1Q8N8J0 262 aa8.28□□□□□ -1.08
CSDE1-201ENST00000261443 AFAP1L1Q8TED9 768 aa8.28□□□□□ -1.08
CSDE1-201ENST00000261443 LZTFL1Q9NQ48 299 aa8.28□□□□□ -1.08
CSDE1-201ENST00000261443 FANCLQ9NW38 375 aa8.28□□□□□ -1.08
CSDE1-201ENST00000261443 CDC23Q9UJX2 597 aa8.28□□□□□ -1.08
CSDE1-201ENST00000261443 NWD1Q149M9 1564 aa8.28□□□□□ -1.08
CSDE1-201ENST00000261443 RNF40O75150 1001 aa8.28□□□□□ -1.08
CSDE1-201ENST00000261443 LIG3P49916 1009 aa8.28□□□□□ -1.08
CSDE1-201ENST00000261443 NCOA5Q9HCD5 579 aaKnown RBP8.28□□□□□ -1.08
CSDE1-201ENST00000261443 SUFUQ9UMX1 484 aa8.28□□□□□ -1.08
CSDE1-201ENST00000261443 ABCC6O95255 1503 aa8.28□□□□□ -1.08
CSDE1-201ENST00000261443 POLR3DP05423 398 aaPredicted RBP8.27□□□□□ -1.08
CSDE1-201ENST00000261443 CCDC175P0C221 793 aa8.27□□□□□ -1.08
CSDE1-201ENST00000261443 PFKFB1P16118 471 aa8.27□□□□□ -1.08
CSDE1-201ENST00000261443 TBX2Q13207 712 aaPredicted RBP8.27□□□□□ -1.08
CSDE1-201ENST00000261443 KIF4BQ2VIQ3 1234 aa8.27□□□□□ -1.08
CSDE1-201ENST00000261443 HSP90AA4PQ58FG1 418 aa8.27□□□□□ -1.08
CSDE1-201ENST00000261443 OLFM4Q6UX06 510 aa8.27□□□□□ -1.08
CSDE1-201ENST00000261443 TC2NQ8N9U0 490 aa8.27□□□□□ -1.08
CSDE1-201ENST00000261443 EAF2Q96CJ1 260 aaPredicted RBP8.27□□□□□ -1.08
CSDE1-201ENST00000261443 MRPL44Q9H9J2 332 aaKnown RBP8.27□□□□□ -1.08
CSDE1-201ENST00000261443 LRRC37A3O60309 1634 aa8.27□□□□□ -1.09
CSDE1-201ENST00000261443 CCDC196A0A1B0GTZ2 297 aa8.27□□□□□ -1.09
CSDE1-201ENST00000261443 LRRIQ3A6PVS8 624 aaPredicted RBP8.27□□□□□ -1.09
CSDE1-201ENST00000261443 GNAT3A8MTJ3 354 aa8.27□□□□□ -1.09
CSDE1-201ENST00000261443 KIF5CO60282 957 aa8.27□□□□□ -1.09
CSDE1-201ENST00000261443 YEATS4O95619 227 aa8.27□□□□□ -1.09
CSDE1-201ENST00000261443 CYP21A2P08686 494 aa8.27□□□□□ -1.09
CSDE1-201ENST00000261443 BRD2P25440 801 aaKnown RBP8.27□□□□□ -1.09
CSDE1-201ENST00000261443 USP8P40818 1118 aa8.27□□□□□ -1.09
CSDE1-201ENST00000261443 INTS13Q9NVM9 706 aa8.27□□□□□ -1.09
CSDE1-201ENST00000261443 TLR7Q9NYK1 1049 aaKnown RBP8.27□□□□□ -1.09
CSDE1-201ENST00000261443 U3KPZ7 1027 aaPredicted RBP8.27□□□□□ -1.09
CSDE1-201ENST00000261443 JCADQ9P266 1359 aa8.27□□□□□ -1.09
CSDE1-201ENST00000261443 MYO1BO43795 1136 aa8.27□□□□□ -1.09
CSDE1-201ENST00000261443 KIF1CO43896 1103 aaKnown RBP8.27□□□□□ -1.09
CSDE1-201ENST00000261443 HNRNPH1P31943 449 aaKnown RBP8.27□□□□□ -1.09
CSDE1-201ENST00000261443 G3BP1Q13283 466 aaKnown RBP eCLIP8.27□□□□□ -1.091e-6■■□□□ 12.6
CSDE1-201ENST00000261443 SPECC1LQ69YQ0 1117 aa8.27□□□□□ -1.09
CSDE1-201ENST00000261443 KAT2BQ92831 832 aa8.27□□□□□ -1.09
CSDE1-201ENST00000261443 C9orf78Q9NZ63 289 aaPredicted RBP8.27□□□□□ -1.09
CSDE1-201ENST00000261443 CEP170BQ9Y4F5 1589 aaPredicted RBP8.27□□□□□ -1.09
CSDE1-201ENST00000261443 HMGB1P09429 215 aaKnown RBP8.26□□□□□ -1.09
CSDE1-201ENST00000261443 TUBB2AQ13885 445 aa8.26□□□□□ -1.09
CSDE1-201ENST00000261443 MTF1Q14872 753 aa8.26□□□□□ -1.09
CSDE1-201ENST00000261443 PLEKHO1Q53GL0 409 aaPredicted RBP8.26□□□□□ -1.09
CSDE1-201ENST00000261443 ZNF569Q5MCW4 686 aa8.26□□□□□ -1.09
CSDE1-201ENST00000261443 DHX32Q7L7V1 743 aaKnown RBP8.26□□□□□ -1.09
CSDE1-201ENST00000261443 EDC3Q96F86 508 aaKnown RBP8.26□□□□□ -1.09
CSDE1-201ENST00000261443 TUBB2BQ9BVA1 445 aa8.26□□□□□ -1.09
CSDE1-201ENST00000261443 POLR3EQ9NVU0 708 aa8.26□□□□□ -1.09
CSDE1-201ENST00000261443 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.26□□□□□ -1.09
CSDE1-201ENST00000261443 ARHGAP23Q9P227 1491 aa8.26□□□□□ -1.09
CSDE1-201ENST00000261443 USP6P35125 1406 aa8.26□□□□□ -1.09
CSDE1-201ENST00000261443 USP31Q70CQ4 1352 aa8.26□□□□□ -1.09
CSDE1-201ENST00000261443 CARMIL3Q8ND23 1372 aa8.26□□□□□ -1.09
CSDE1-201ENST00000261443 TNRQ92752 1358 aa8.26□□□□□ -1.09
CSDE1-201ENST00000261443 CTAGE15A4D2H0 777 aa8.26□□□□□ -1.09
CSDE1-201ENST00000261443 EXOC5O00471 708 aa8.26□□□□□ -1.09
CSDE1-201ENST00000261443 SASH1O94885 1247 aa8.26□□□□□ -1.09
CSDE1-201ENST00000261443 TUBBP07437 444 aa8.26□□□□□ -1.09
CSDE1-201ENST00000261443 CTAGE8P0CG41 777 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms