RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 TEX11Q8IYF3 940 aa21.16■□□□□ 0.98
SMARCC1-201ENST00000254480 MYL10Q9BUA6 226 aa21.16■□□□□ 0.98
SMARCC1-201ENST00000254480 C19orf44Q9H6X5 657 aa21.16■□□□□ 0.98
SMARCC1-201ENST00000254480 GNAT2P19087 354 aa21.16■□□□□ 0.98
SMARCC1-201ENST00000254480 ATP10BO94823 1461 aa21.16■□□□□ 0.98
SMARCC1-201ENST00000254480 PPP1R9BQ96SB3 815 aa21.15■□□□□ 0.98
SMARCC1-201ENST00000254480 CEP63Q96MT8 703 aa21.15■□□□□ 0.98
SMARCC1-201ENST00000254480 MAEAQ7L5Y9 396 aa21.15■□□□□ 0.98
SMARCC1-201ENST00000254480 EHBP1Q8NDI1 1231 aa21.15■□□□□ 0.98
SMARCC1-201ENST00000254480 IMPG2Q9BZV3 1241 aa21.15■□□□□ 0.98
SMARCC1-201ENST00000254480 PARP1P09874 1014 aaKnown RBP21.14■□□□□ 0.98
SMARCC1-201ENST00000254480 FAM227BQ96M60 508 aa21.14■□□□□ 0.98
SMARCC1-201ENST00000254480 DNAJC21Q5F1R6 531 aaKnown RBP21.14■□□□□ 0.98
SMARCC1-201ENST00000254480 TSNARE1Q96NA8 513 aa21.14■□□□□ 0.98
SMARCC1-201ENST00000254480 CALML3P27482 149 aa21.14■□□□□ 0.97
SMARCC1-201ENST00000254480 CCDC42Q96M95 316 aa21.14■□□□□ 0.97
SMARCC1-201ENST00000254480 FERMT1Q9BQL6 677 aa21.14■□□□□ 0.97
SMARCC1-201ENST00000254480 PAXBP1Q9Y5B6 917 aa21.14■□□□□ 0.97
SMARCC1-201ENST00000254480 GRIPAP1Q4V328 841 aa21.13■□□□□ 0.97
SMARCC1-201ENST00000254480 PCDH11XQ9BZA7 1347 aa21.13■□□□□ 0.97
SMARCC1-201ENST00000254480 PCDH11YQ9BZA8 1340 aa21.13■□□□□ 0.97
SMARCC1-201ENST00000254480 CNBD1Q8NA66 436 aa21.13■□□□□ 0.97
SMARCC1-201ENST00000254480 hCG_1642624A0A1W2PR95 340 aa21.13■□□□□ 0.97
SMARCC1-201ENST00000254480 RHOXF2BP0C7M4 288 aa21.13■□□□□ 0.97
SMARCC1-201ENST00000254480 RHOXF2Q9BQY4 288 aa21.13■□□□□ 0.97
SMARCC1-201ENST00000254480 AATFQ9NY61 560 aaKnown RBP eCLIP21.13■□□□□ 0.97
SMARCC1-201ENST00000254480 NEK11Q8NG66 645 aa21.13■□□□□ 0.97
SMARCC1-201ENST00000254480 ZNF790Q6PG37 636 aa21.13■□□□□ 0.97
SMARCC1-201ENST00000254480 USP26Q9BXU7 913 aa21.13■□□□□ 0.97
SMARCC1-201ENST00000254480 ZNF569Q5MCW4 686 aa21.12■□□□□ 0.97
SMARCC1-201ENST00000254480 CCNL1Q9UK58 526 aaPredicted RBP21.12■□□□□ 0.97
SMARCC1-201ENST00000254480 TACC1O75410 805 aa21.12■□□□□ 0.97
SMARCC1-201ENST00000254480 CAVIN2O95810 425 aa21.12■□□□□ 0.97
SMARCC1-201ENST00000254480 PPARDQ03181 441 aa21.12■□□□□ 0.97
SMARCC1-201ENST00000254480 CTDSPL2Q05D32 466 aa21.12■□□□□ 0.97
SMARCC1-201ENST00000254480 CCDC25Q86WR0 208 aa21.12■□□□□ 0.97
SMARCC1-201ENST00000254480 IFT81Q8WYA0 676 aa21.12■□□□□ 0.97
SMARCC1-201ENST00000254480 CTNND2Q9UQB3 1225 aa21.12■□□□□ 0.97
SMARCC1-201ENST00000254480 PIK3AP1Q6ZUJ8 805 aa21.12■□□□□ 0.97
SMARCC1-201ENST00000254480 MICALCLQ6ZW33 695 aa21.12■□□□□ 0.97
SMARCC1-201ENST00000254480 USP37Q86T82 979 aa21.12■□□□□ 0.97
SMARCC1-201ENST00000254480 IPO4Q8TEX9 1081 aaKnown RBP21.12■□□□□ 0.97
SMARCC1-201ENST00000254480 IP6K1Q92551 441 aa21.12■□□□□ 0.97
SMARCC1-201ENST00000254480 SELENOOQ9BVL4 669 aa21.12■□□□□ 0.97
SMARCC1-201ENST00000254480 CKAP4Q07065 602 aaKnown RBP21.12■□□□□ 0.97
SMARCC1-201ENST00000254480 CCDC155Q8N6L0 562 aa21.12■□□□□ 0.97
SMARCC1-201ENST00000254480 PABPN1LA6NDY0 278 aaKnown RBP21.12■□□□□ 0.97
SMARCC1-201ENST00000254480 DDX39AO00148 427 aaKnown RBP21.12■□□□□ 0.97
SMARCC1-201ENST00000254480 BMS1Q14692 1282 aaKnown RBP21.12■□□□□ 0.97
SMARCC1-201ENST00000254480 POLD1P28340 1107 aa21.11■□□□□ 0.97
SMARCC1-201ENST00000254480 XAGE2Q96GT9 111 aa21.11■□□□□ 0.97
SMARCC1-201ENST00000254480 KIF5AQ12840 1032 aa21.11■□□□□ 0.97
SMARCC1-201ENST00000254480 CCDC63Q8NA47 563 aa21.11■□□□□ 0.97
SMARCC1-201ENST00000254480 TESK2Q96S53 571 aa21.11■□□□□ 0.97
SMARCC1-201ENST00000254480 PARD3Q8TEW0 1356 aa21.11■□□□□ 0.97
SMARCC1-201ENST00000254480 CTAGE9A4FU28 777 aa21.11■□□□□ 0.97
SMARCC1-201ENST00000254480 SPAG1Q07617 926 aa21.11■□□□□ 0.97
SMARCC1-201ENST00000254480 TCP10Q12799 353 aa21.11■□□□□ 0.97
SMARCC1-201ENST00000254480 ANKRD2Q9GZV1 360 aa21.11■□□□□ 0.97
SMARCC1-201ENST00000254480 MRPS9P82933 396 aaKnown RBP21.11■□□□□ 0.97
SMARCC1-201ENST00000254480 TNNI3KQ59H18 835 aa21.11■□□□□ 0.97
SMARCC1-201ENST00000254480 GINS2Q9Y248 185 aa21.11■□□□□ 0.97
SMARCC1-201ENST00000254480 FPGT-TNNI3KV9GXZ4 949 aa21.11■□□□□ 0.97
SMARCC1-201ENST00000254480 RAPGEF6Q8TEU7 1601 aa21.11■□□□□ 0.97
SMARCC1-201ENST00000254480 SYT10Q6XYQ8 523 aa21.1■□□□□ 0.97
SMARCC1-201ENST00000254480 DDX21Q9NR30 783 aaKnown RBP eCLIP21.1■□□□□ 0.97
SMARCC1-201ENST00000254480 PLCG2P16885 1265 aa21.1■□□□□ 0.97
SMARCC1-201ENST00000254480 FAM98CQ17RN3 349 aaKnown RBP21.1■□□□□ 0.97
SMARCC1-201ENST00000254480 HS2ST1Q7LGA3 356 aa21.1■□□□□ 0.97
SMARCC1-201ENST00000254480 RBM17Q96I25 401 aaKnown RBP21.1■□□□□ 0.97
SMARCC1-201ENST00000254480 SELENOSQ9BQE4 189 aa21.1■□□□□ 0.97
SMARCC1-201ENST00000254480 DUOX2Q9NRD8 1548 aa21.1■□□□□ 0.97
SMARCC1-201ENST00000254480 POLR3AO14802 1390 aaPredicted RBP21.1■□□□□ 0.97
SMARCC1-201ENST00000254480 GNA11P29992 359 aa21.1■□□□□ 0.97
SMARCC1-201ENST00000254480 RNASE9P60153 205 aaKnown RBP21.1■□□□□ 0.97
SMARCC1-201ENST00000254480 IQCGQ9H095 443 aaKnown RBP21.1■□□□□ 0.97
SMARCC1-201ENST00000254480 ZBTB7BO15156 539 aaPredicted RBP21.1■□□□□ 0.97
SMARCC1-201ENST00000254480 SNX21Q969T3 373 aa21.09■□□□□ 0.97
SMARCC1-201ENST00000254480 V9GY48 417 aaPredicted RBP21.09■□□□□ 0.97
SMARCC1-201ENST00000254480 CCNT1O60563 726 aaKnown RBP21.09■□□□□ 0.97
SMARCC1-201ENST00000254480 ATRIPQ8WXE1 791 aa21.09■□□□□ 0.97
SMARCC1-201ENST00000254480 HIBADHP31937 336 aaKnown RBP21.09■□□□□ 0.97
SMARCC1-201ENST00000254480 MXRA7P84157 204 aa21.09■□□□□ 0.97
SMARCC1-201ENST00000254480 APBB1IPQ7Z5R6 666 aaPredicted RBP21.09■□□□□ 0.97
SMARCC1-201ENST00000254480 PLVAPQ9BX97 442 aa21.09■□□□□ 0.97
SMARCC1-201ENST00000254480 SLC27A2O14975 620 aa21.09■□□□□ 0.97
SMARCC1-201ENST00000254480 KRT5P13647 590 aa21.09■□□□□ 0.97
SMARCC1-201ENST00000254480 VPS16Q9H269 839 aa21.09■□□□□ 0.97
SMARCC1-201ENST00000254480 RAD51AP2Q09MP3 1159 aa21.08■□□□□ 0.97
SMARCC1-201ENST00000254480 ARFGAP3Q9NP61 516 aa21.08■□□□□ 0.97
SMARCC1-201ENST00000254480 LMTK3Q96Q04 1460 aa21.08■□□□□ 0.97
SMARCC1-201ENST00000254480 TLDC2A0PJX2 215 aa21.08■□□□□ 0.97
SMARCC1-201ENST00000254480 SPECC1LQ69YQ0 1117 aa21.08■□□□□ 0.97
SMARCC1-201ENST00000254480 BBXQ8WY36 941 aaPredicted RBP21.08■□□□□ 0.97
SMARCC1-201ENST00000254480 FERP16591 822 aa21.08■□□□□ 0.97
SMARCC1-201ENST00000254480 EYA2O00167 538 aa21.08■□□□□ 0.96
SMARCC1-201ENST00000254480 PROCA1Q8NCQ7 364 aaPredicted RBP21.08■□□□□ 0.96
SMARCC1-201ENST00000254480 PHKBQ93100 1093 aa21.08■□□□□ 0.96
SMARCC1-201ENST00000254480 SSX2IPQ9Y2D8 614 aa21.08■□□□□ 0.96
SMARCC1-201ENST00000254480 TRAF5O00463 557 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms