RNA–Protein interactions for RNA: ENST00000222402.7

UBE2D4-201, Transcript of ubiquitin conjugating enzyme E2 D4 (putative), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBE2D4, Length 3,974 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4-201ENST00000222402 LTN1O94822 1766 aa17.3■□□□□ 0.36
UBE2D4-201ENST00000222402 RANBP6O60518 1105 aaKnown RBP17.3■□□□□ 0.36
UBE2D4-201ENST00000222402 PHKA1P46020 1223 aa17.3■□□□□ 0.36
UBE2D4-201ENST00000222402 SCARF1Q14162 830 aa17.3■□□□□ 0.36
UBE2D4-201ENST00000222402 MYSM1Q5VVJ2 828 aa17.3■□□□□ 0.36
UBE2D4-201ENST00000222402 UBE2Q2Q8WVN8 375 aa17.3■□□□□ 0.36
UBE2D4-201ENST00000222402 BRMS1Q9HCU9 246 aa17.3■□□□□ 0.36
UBE2D4-201ENST00000222402 WTAPQ15007 396 aa17.3■□□□□ 0.36
UBE2D4-201ENST00000222402 HSP90AA4PQ58FG1 418 aa17.3■□□□□ 0.36
UBE2D4-201ENST00000222402 ARMT1Q9H993 441 aa17.3■□□□□ 0.36
UBE2D4-201ENST00000222402 GJB4Q9NTQ9 266 aa17.3■□□□□ 0.36
UBE2D4-201ENST00000222402 NIP7Q9Y221 180 aaKnown RBP eCLIP17.3■□□□□ 0.36
UBE2D4-201ENST00000222402 FAM177A1Q8N128 213 aaPredicted RBP17.29■□□□□ 0.36
UBE2D4-201ENST00000222402 PUM3Q15397 648 aaKnown RBP17.29■□□□□ 0.36
UBE2D4-201ENST00000222402 HLFQ16534 295 aa17.29■□□□□ 0.36
UBE2D4-201ENST00000222402 CCDC152Q4G0S7 254 aa17.29■□□□□ 0.36
UBE2D4-201ENST00000222402 CCDC102BQ68D86 513 aa17.29■□□□□ 0.36
UBE2D4-201ENST00000222402 CLIC4Q9Y696 253 aa17.29■□□□□ 0.36
UBE2D4-201ENST00000222402 CCDC196A0A1B0GTZ2 297 aa17.29■□□□□ 0.36
UBE2D4-201ENST00000222402 C11orf57Q6ZUT1 292 aaPredicted RBP17.29■□□□□ 0.36
UBE2D4-201ENST00000222402 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.29■□□□□ 0.36
UBE2D4-201ENST00000222402 CCAR2Q8N163 923 aaKnown RBP17.29■□□□□ 0.36
UBE2D4-201ENST00000222402 FBXO18Q8NFZ0 1043 aa17.29■□□□□ 0.36
UBE2D4-201ENST00000222402 FBXO3Q9UK99 471 aa17.29■□□□□ 0.36
UBE2D4-201ENST00000222402 RIOK3O14730 519 aaKnown RBP17.28■□□□□ 0.36
UBE2D4-201ENST00000222402 CYP7A1P22680 504 aa17.28■□□□□ 0.36
UBE2D4-201ENST00000222402 IFNKQ9P0W0 207 aa17.28■□□□□ 0.36
UBE2D4-201ENST00000222402 RFX7Q2KHR2 1363 aa17.28■□□□□ 0.36
UBE2D4-201ENST00000222402 GSDMDP57764 484 aa17.28■□□□□ 0.36
UBE2D4-201ENST00000222402 CBX1P83916 185 aa17.28■□□□□ 0.36
UBE2D4-201ENST00000222402 CTDSPL2Q05D32 466 aa17.28■□□□□ 0.36
UBE2D4-201ENST00000222402 CEP135Q66GS9 1140 aa17.28■□□□□ 0.36
UBE2D4-201ENST00000222402 ADALQ6DHV7 355 aa17.28■□□□□ 0.36
UBE2D4-201ENST00000222402 KIAA1524Q8TCG1 905 aa17.28■□□□□ 0.36
UBE2D4-201ENST00000222402 UTP14AQ9BVJ6 771 aaKnown RBP17.28■□□□□ 0.36
UBE2D4-201ENST00000222402 XRN1Q8IZH2 1706 aaKnown RBP17.28■□□□□ 0.36
UBE2D4-201ENST00000222402 PDE6AP16499 860 aa17.28■□□□□ 0.36
UBE2D4-201ENST00000222402 RTN1Q16799 776 aa17.28■□□□□ 0.36
UBE2D4-201ENST00000222402 TDRD7Q8NHU6 1098 aaKnown RBP17.28■□□□□ 0.36
UBE2D4-201ENST00000222402 RNF41Q9H4P4 317 aaPredicted RBP17.28■□□□□ 0.36
UBE2D4-201ENST00000222402 ZNF202O95125 648 aa17.27■□□□□ 0.36
UBE2D4-201ENST00000222402 KRT40Q6A162 431 aa17.27■□□□□ 0.36
UBE2D4-201ENST00000222402 NLRP10Q86W26 655 aa17.27■□□□□ 0.36
UBE2D4-201ENST00000222402 SMARCC2Q8TAQ2 1214 aa17.27■□□□□ 0.36
UBE2D4-201ENST00000222402 LPIN2Q92539 896 aa17.27■□□□□ 0.36
UBE2D4-201ENST00000222402 CBFA2T2O43439 604 aa17.27■□□□□ 0.36
UBE2D4-201ENST00000222402 NDUFA8P51970 172 aa17.27■□□□□ 0.36
UBE2D4-201ENST00000222402 ISCA1Q9BUE6 129 aa17.27■□□□□ 0.36
UBE2D4-201ENST00000222402 KRT23Q9C075 422 aa17.27■□□□□ 0.36
UBE2D4-201ENST00000222402 PRDM10Q9NQV6 1147 aa17.27■□□□□ 0.36
UBE2D4-201ENST00000222402 PDE8BO95263 885 aa17.27■□□□□ 0.35
UBE2D4-201ENST00000222402 CAVIN4Q5BKX8 364 aa17.26■□□□□ 0.35
UBE2D4-201ENST00000222402 PPP4R3BQ5MIZ7 849 aa17.26■□□□□ 0.35
UBE2D4-201ENST00000222402 KIF18AQ8NI77 898 aa17.26■□□□□ 0.35
UBE2D4-201ENST00000222402 CNNM2Q9H8M5 875 aa17.26■□□□□ 0.35
UBE2D4-201ENST00000222402 ZNF652Q9Y2D9 606 aa17.26■□□□□ 0.35
UBE2D4-201ENST00000222402 MCAMP43121 646 aa17.26■□□□□ 0.35
UBE2D4-201ENST00000222402 MNS1Q8NEH6 495 aa17.26■□□□□ 0.35
UBE2D4-201ENST00000222402 TTLL11Q8NHH1 800 aa17.26■□□□□ 0.35
UBE2D4-201ENST00000222402 TCHHQ07283 1943 aa17.26■□□□□ 0.35
UBE2D4-201ENST00000222402 PALLDQ8WX93 1383 aa17.26■□□□□ 0.35
UBE2D4-201ENST00000222402 YEATS4O95619 227 aa17.26■□□□□ 0.35
UBE2D4-201ENST00000222402 CASP7P55210 303 aa17.25■□□□□ 0.35
UBE2D4-201ENST00000222402 EXOSC10Q01780 885 aaKnown RBP17.25■□□□□ 0.35
UBE2D4-201ENST00000222402 SPATA5Q8NB90 893 aa17.25■□□□□ 0.35
UBE2D4-201ENST00000222402 TMEM87BQ96K49 555 aa17.25■□□□□ 0.35
UBE2D4-201ENST00000222402 CDC5LQ99459 802 aaKnown RBP17.25■□□□□ 0.35
UBE2D4-201ENST00000222402 SNAP23O00161 211 aa17.25■□□□□ 0.35
UBE2D4-201ENST00000222402 KLHL10Q6JEL2 608 aa17.25■□□□□ 0.35
UBE2D4-201ENST00000222402 AIFM3Q96NN9 605 aa17.25■□□□□ 0.35
UBE2D4-201ENST00000222402 DDB1Q16531 1140 aa17.25■□□□□ 0.35
UBE2D4-201ENST00000222402 KIAA1468Q9P260 1216 aa17.24■□□□□ 0.35
UBE2D4-201ENST00000222402 WWC3Q9ULE0 1092 aa17.24■□□□□ 0.35
UBE2D4-201ENST00000222402 TOP1P11387 765 aaKnown RBP17.24■□□□□ 0.35
UBE2D4-201ENST00000222402 SPECC1Q5M775 1068 aa17.24■□□□□ 0.35
UBE2D4-201ENST00000222402 FUCA2Q9BTY2 467 aa17.24■□□□□ 0.35
UBE2D4-201ENST00000222402 GOLPH3LQ9H4A5 285 aa17.24■□□□□ 0.35
UBE2D4-201ENST00000222402 RTEL1Q9NZ71 1219 aa17.24■□□□□ 0.35
UBE2D4-201ENST00000222402 SPDYE4A6NLX3 237 aa17.24■□□□□ 0.35
UBE2D4-201ENST00000222402 ADD2P35612 726 aa17.24■□□□□ 0.35
UBE2D4-201ENST00000222402 UBASH3AP57075 661 aa17.24■□□□□ 0.35
UBE2D4-201ENST00000222402 IQCA1Q86XH1 822 aa17.24■□□□□ 0.35
UBE2D4-201ENST00000222402 LINC00301Q8NCQ3 95 aa17.23■□□□□ 0.35
UBE2D4-201ENST00000222402 NOL10Q9BSC4 688 aaKnown RBP17.23■□□□□ 0.35
UBE2D4-201ENST00000222402 TPM1P09493 284 aa17.23■□□□□ 0.35
UBE2D4-201ENST00000222402 SLC4A8Q2Y0W8 1093 aa17.23■□□□□ 0.35
UBE2D4-201ENST00000222402 AMOTL1Q8IY63 956 aa17.23■□□□□ 0.35
UBE2D4-201ENST00000222402 CACTINQ8WUQ7 758 aaKnown RBP17.23■□□□□ 0.35
UBE2D4-201ENST00000222402 DACH1Q9UI36 760 aa17.23■□□□□ 0.35
UBE2D4-201ENST00000222402 CEP131Q9UPN4 1083 aa17.23■□□□□ 0.35
UBE2D4-201ENST00000222402 CTDNEP1O95476 244 aa17.23■□□□□ 0.35
UBE2D4-201ENST00000222402 PFKFB1P16118 471 aa17.23■□□□□ 0.35
UBE2D4-201ENST00000222402 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.23■□□□□ 0.35
UBE2D4-201ENST00000222402 PIH1D3Q9NQM4 214 aaKnown RBP17.23■□□□□ 0.35
UBE2D4-201ENST00000222402 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.23■□□□□ 0.35
UBE2D4-201ENST00000222402 PAXBP1Q9Y5B6 917 aa17.23■□□□□ 0.35
UBE2D4-201ENST00000222402 V9GYY5 206 aaPredicted RBP17.23■□□□□ 0.35
UBE2D4-201ENST00000222402 AP5Z1O43299 807 aa17.22■□□□□ 0.35
UBE2D4-201ENST00000222402 SNW1Q13573 536 aaKnown RBP17.22■□□□□ 0.35
UBE2D4-201ENST00000222402 ZNF335Q9H4Z2 1342 aaPredicted RBP17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms