RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 MRGPRDQ8TDS7 321 aa16.81■□□□□ 0.28
SYNGAP1-227ENST00000638142 FER1L6-AS2Q96M78 137 aa16.81■□□□□ 0.28
SYNGAP1-227ENST00000638142 USF3Q68DE3 2245 aa16.81■□□□□ 0.28
SYNGAP1-227ENST00000638142 C11orf94C9JXX5 98 aa16.8■□□□□ 0.28
SYNGAP1-227ENST00000638142 MPV17P39210 176 aa16.8■□□□□ 0.28
SYNGAP1-227ENST00000638142 TMEM249Q2WGJ8 235 aa16.8■□□□□ 0.28
SYNGAP1-227ENST00000638142 INO80CQ6PI98 192 aaPredicted RBP16.8■□□□□ 0.28
SYNGAP1-227ENST00000638142 ACP7Q6ZNF0 438 aa16.8■□□□□ 0.28
SYNGAP1-227ENST00000638142 CISD2Q8N5K1 135 aaKnown RBP16.8■□□□□ 0.28
SYNGAP1-227ENST00000638142 MLNRO43193 412 aa16.8■□□□□ 0.28
SYNGAP1-227ENST00000638142 SOX15O60248 233 aa16.8■□□□□ 0.28
SYNGAP1-227ENST00000638142 KCNIP4Q6PIL6 250 aa16.8■□□□□ 0.28
SYNGAP1-227ENST00000638142 ZNF826PQ6ZT77 177 aa16.8■□□□□ 0.28
SYNGAP1-227ENST00000638142 LURAP1Q96LR2 239 aa16.8■□□□□ 0.28
SYNGAP1-227ENST00000638142 DIDO1Q9BTC0 2240 aaKnown RBP16.8■□□□□ 0.28
SYNGAP1-227ENST00000638142 MARCH11A6NNE9 402 aa16.79■□□□□ 0.28
SYNGAP1-227ENST00000638142 PDE6DO43924 150 aa16.79■□□□□ 0.28
SYNGAP1-227ENST00000638142 SPCS3P61009 180 aa16.79■□□□□ 0.28
SYNGAP1-227ENST00000638142 GUCD1Q96NT3 240 aa16.79■□□□□ 0.28
SYNGAP1-227ENST00000638142 CXXC4Q9H2H0 198 aa16.79■□□□□ 0.28
SYNGAP1-227ENST00000638142 IL17BQ9UHF5 180 aa16.79■□□□□ 0.28
SYNGAP1-227ENST00000638142 WDR83OSQ9Y284 106 aa16.79■□□□□ 0.28
SYNGAP1-227ENST00000638142 LINC00473A8K010 186 aa16.79■□□□□ 0.28
SYNGAP1-227ENST00000638142 C15orf62A8K5M9 175 aa16.79■□□□□ 0.28
SYNGAP1-227ENST00000638142 RAB4BP61018 213 aa16.79■□□□□ 0.28
SYNGAP1-227ENST00000638142 RPS16P62249 146 aaKnown RBP16.79■□□□□ 0.28
SYNGAP1-227ENST00000638142 LCN2P80188 198 aa16.79■□□□□ 0.28
SYNGAP1-227ENST00000638142 CXorf67Q86X51 503 aaPredicted RBP16.79■□□□□ 0.28
SYNGAP1-227ENST00000638142 RAB1CQ92928 201 aa16.79■□□□□ 0.28
SYNGAP1-227ENST00000638142 TMEM18Q96B42 140 aa16.79■□□□□ 0.28
SYNGAP1-227ENST00000638142 CDX2Q99626 313 aaPredicted RBP16.79■□□□□ 0.28
SYNGAP1-227ENST00000638142 OR6C3Q9NZP0 311 aa16.79■□□□□ 0.28
SYNGAP1-227ENST00000638142 WASF3Q9UPY6 502 aa16.79■□□□□ 0.28
SYNGAP1-227ENST00000638142 MED13Q9UHV7 2174 aa16.79■□□□□ 0.28
SYNGAP1-227ENST00000638142 MUC3AQ02505 3323 aa16.78■□□□□ 0.28
SYNGAP1-227ENST00000638142 IFNL4K9M1U5 179 aa16.78■□□□□ 0.28
SYNGAP1-227ENST00000638142 LYZL6O75951 148 aa16.78■□□□□ 0.28
SYNGAP1-227ENST00000638142 TNFSF15O95150 251 aa16.78■□□□□ 0.28
SYNGAP1-227ENST00000638142 CD99P14209 185 aa16.78■□□□□ 0.28
SYNGAP1-227ENST00000638142 Q6ZR03 302 aa16.78■□□□□ 0.28
SYNGAP1-227ENST00000638142 Q8N7P7 452 aa16.78■□□□□ 0.28
SYNGAP1-227ENST00000638142 ZNF705GA8MUZ8 300 aaPredicted RBP16.78■□□□□ 0.28
SYNGAP1-227ENST00000638142 WISP2O76076 250 aa16.78■□□□□ 0.28
SYNGAP1-227ENST00000638142 NPPCP23582 126 aa16.78■□□□□ 0.28
SYNGAP1-227ENST00000638142 CCKARP32238 428 aa16.78■□□□□ 0.28
SYNGAP1-227ENST00000638142 RNFT1Q5M7Z0 435 aa16.78■□□□□ 0.28
SYNGAP1-227ENST00000638142 ZDHHC11Q9H8X9 412 aa16.78■□□□□ 0.28
SYNGAP1-227ENST00000638142 TMPRSS2O15393 492 aa16.77■□□□□ 0.28
SYNGAP1-227ENST00000638142 CD1BP29016 333 aa16.77■□□□□ 0.28
SYNGAP1-227ENST00000638142 SSTR5P35346 364 aa16.77■□□□□ 0.28
SYNGAP1-227ENST00000638142 ZNF124Q15973 351 aa16.77■□□□□ 0.28
SYNGAP1-227ENST00000638142 AARDQ4LEZ3 155 aa16.77■□□□□ 0.28
SYNGAP1-227ENST00000638142 SPINK9Q5DT21 86 aa16.77■□□□□ 0.28
SYNGAP1-227ENST00000638142 TMEM37Q8WXS4 190 aa16.77■□□□□ 0.28
SYNGAP1-227ENST00000638142 BTF3L4Q96K17 158 aa16.77■□□□□ 0.28
SYNGAP1-227ENST00000638142 FUT9Q9Y231 359 aa16.77■□□□□ 0.28
SYNGAP1-227ENST00000638142 GTF3C1Q12789 2109 aa16.77■□□□□ 0.28
SYNGAP1-227ENST00000638142 SNRPCP09234 159 aaKnown RBP16.77■□□□□ 0.27
SYNGAP1-227ENST00000638142 CLEC12BQ2HXU8 276 aa16.77■□□□□ 0.27
SYNGAP1-227ENST00000638142 WDR82Q6UXN9 313 aa16.77■□□□□ 0.27
SYNGAP1-227ENST00000638142 OR13A1Q8NGR1 328 aa16.77■□□□□ 0.27
SYNGAP1-227ENST00000638142 PSG11Q9UQ72 335 aa16.77■□□□□ 0.27
SYNGAP1-227ENST00000638142 USF2Q15853 346 aaPredicted RBP16.76■□□□□ 0.27
SYNGAP1-227ENST00000638142 TRAT1Q6PIZ9 186 aa16.76■□□□□ 0.27
SYNGAP1-227ENST00000638142 LINC01551Q86U37 167 aa16.76■□□□□ 0.27
SYNGAP1-227ENST00000638142 R3HDM4Q96D70 268 aa16.76■□□□□ 0.27
SYNGAP1-227ENST00000638142 QTRT1Q9BXR0 403 aaKnown RBP16.76■□□□□ 0.27
SYNGAP1-227ENST00000638142 KCNIP2Q9NS61 270 aa16.76■□□□□ 0.27
SYNGAP1-227ENST00000638142 FAM90A9PA6NNJ1 464 aa16.76■□□□□ 0.27
SYNGAP1-227ENST00000638142 SPINT2O43291 252 aa16.76■□□□□ 0.27
SYNGAP1-227ENST00000638142 MPDU1O75352 247 aa16.76■□□□□ 0.27
SYNGAP1-227ENST00000638142 ADH4P08319 380 aa16.76■□□□□ 0.27
SYNGAP1-227ENST00000638142 DEFA4P12838 97 aa16.76■□□□□ 0.27
SYNGAP1-227ENST00000638142 HTD2P86397 168 aa16.76■□□□□ 0.27
SYNGAP1-227ENST00000638142 SMIM21Q3B7S5 101 aa16.76■□□□□ 0.27
SYNGAP1-227ENST00000638142 DOCK11Q5JSL3 2073 aa16.76■□□□□ 0.27
SYNGAP1-227ENST00000638142 IGHV3-43A0A0B4J1X8 118 aa16.75■□□□□ 0.27
SYNGAP1-227ENST00000638142 IGHV3-43DP0DP04 118 aa16.75■□□□□ 0.27
SYNGAP1-227ENST00000638142 RPP30P78346 268 aaKnown RBP16.75■□□□□ 0.27
SYNGAP1-227ENST00000638142 Q6ZT83 130 aa16.75■□□□□ 0.27
SYNGAP1-227ENST00000638142 NEU1Q99519 415 aa16.75■□□□□ 0.27
SYNGAP1-227ENST00000638142 F6UZH7 168 aa16.75■□□□□ 0.27
SYNGAP1-227ENST00000638142 GNB1P62873 340 aa16.75■□□□□ 0.27
SYNGAP1-227ENST00000638142 PAX5Q02548 391 aa16.75■□□□□ 0.27
SYNGAP1-227ENST00000638142 FOXF2Q12947 444 aa16.75■□□□□ 0.27
SYNGAP1-227ENST00000638142 IQCJQ1A5X6 159 aa16.75■□□□□ 0.27
SYNGAP1-227ENST00000638142 TGIF2LXQ8IUE1 241 aa16.75■□□□□ 0.27
SYNGAP1-227ENST00000638142 TMEM178AQ8NBL3 297 aa16.75■□□□□ 0.27
SYNGAP1-227ENST00000638142 IMMP2LQ96T52 175 aa16.75■□□□□ 0.27
SYNGAP1-227ENST00000638142 ARG2P78540 354 aa16.74■□□□□ 0.27
SYNGAP1-227ENST00000638142 PRAMEF6Q5VXH4 476 aa16.74■□□□□ 0.27
SYNGAP1-227ENST00000638142 ARRDC1-AS1Q9H2J1 176 aa16.74■□□□□ 0.27
SYNGAP1-227ENST00000638142 CLCF1Q9UBD9 225 aa16.74■□□□□ 0.27
SYNGAP1-227ENST00000638142 A0A1W2PPV4 95 aa16.74■□□□□ 0.27
SYNGAP1-227ENST00000638142 IGKV3-15P01624 115 aa16.74■□□□□ 0.27
SYNGAP1-227ENST00000638142 OR9G9P0C7N8 305 aa16.74■□□□□ 0.27
SYNGAP1-227ENST00000638142 CHRNA7P36544 502 aa16.74■□□□□ 0.27
SYNGAP1-227ENST00000638142 LINC00205P59089 165 aa16.74■□□□□ 0.27
SYNGAP1-227ENST00000638142 NUTF2P61970 127 aaKnown RBP16.74■□□□□ 0.27
SYNGAP1-227ENST00000638142 HOXA4Q00056 320 aaPredicted RBP16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms