RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 CATR1Q13166 79 aa14.4□□□□□ -0.1
CLN3-259ENST00000637551 FOXE3Q13461 319 aa14.4□□□□□ -0.1
CLN3-259ENST00000637551 PSG5Q15238 335 aa14.4□□□□□ -0.1
CLN3-259ENST00000637551 LYSMD2Q8IV50 215 aa14.4□□□□□ -0.1
CLN3-259ENST00000637551 TEX45Q8NA69 505 aa14.4□□□□□ -0.1
CLN3-259ENST00000637551 BVESQ8NE79 360 aa14.4□□□□□ -0.1
CLN3-259ENST00000637551 OR4F17Q8NGA8 305 aa14.4□□□□□ -0.1
CLN3-259ENST00000637551 OR4S2Q8NH73 311 aa14.4□□□□□ -0.1
CLN3-259ENST00000637551 SMIM4Q8WVI0 70 aa14.4□□□□□ -0.1
CLN3-259ENST00000637551 FCAMRQ8WWV6 532 aa14.4□□□□□ -0.1
CLN3-259ENST00000637551 HARBI1Q96MB7 349 aa14.4□□□□□ -0.1
CLN3-259ENST00000637551 TMEM68Q96MH6 324 aa14.4□□□□□ -0.1
CLN3-259ENST00000637551 OR4F4Q96R69 305 aa14.4□□□□□ -0.1
CLN3-259ENST00000637551 FAM212BQ9NTI7 297 aaPredicted RBP14.4□□□□□ -0.1
CLN3-259ENST00000637551 TAS2R8Q9NYW2 309 aa14.4□□□□□ -0.1
CLN3-259ENST00000637551 PRKDCP78527 4128 aaKnown RBP14.39□□□□□ -0.11
CLN3-259ENST00000637551 LINC00473A8K010 186 aa14.39□□□□□ -0.11
CLN3-259ENST00000637551 VDAC1P21796 283 aa14.39□□□□□ -0.11
CLN3-259ENST00000637551 PTBP1P26599 531 aaKnown RBP eCLIP14.39□□□□□ -0.11
CLN3-259ENST00000637551 UCP3P55916 312 aa14.39□□□□□ -0.11
CLN3-259ENST00000637551 UBE2KP61086 200 aa14.39□□□□□ -0.11
CLN3-259ENST00000637551 VMA21Q3ZAQ7 101 aa14.39□□□□□ -0.11
CLN3-259ENST00000637551 TREML4Q6UXN2 200 aa14.39□□□□□ -0.11
CLN3-259ENST00000637551 PPP1R27Q86WC6 154 aa14.39□□□□□ -0.11
CLN3-259ENST00000637551 TMEM17Q86X19 198 aa14.39□□□□□ -0.11
CLN3-259ENST00000637551 CADM3Q8N126 398 aa14.39□□□□□ -0.11
CLN3-259ENST00000637551 MCFD2Q8NI22 146 aa14.39□□□□□ -0.11
CLN3-259ENST00000637551 VSTM2AQ8TAG5 236 aa14.39□□□□□ -0.11
CLN3-259ENST00000637551 DIRAS2Q96HU8 199 aa14.39□□□□□ -0.11
CLN3-259ENST00000637551 RITA1Q96K30 269 aa14.39□□□□□ -0.11
CLN3-259ENST00000637551 ABHD1Q96SE0 405 aa14.39□□□□□ -0.11
CLN3-259ENST00000637551 HSPB9Q9BQS6 159 aa14.39□□□□□ -0.11
CLN3-259ENST00000637551 SLC5A7Q9GZV3 580 aa14.39□□□□□ -0.11
CLN3-259ENST00000637551 METTL1Q9UBP6 276 aaKnown RBP14.39□□□□□ -0.11
CLN3-259ENST00000637551 MEIS3P1A6NDR6 274 aa14.38□□□□□ -0.11
CLN3-259ENST00000637551 CCDC160A6NGH7 325 aa14.38□□□□□ -0.11
CLN3-259ENST00000637551 SHOXO15266 292 aa14.38□□□□□ -0.11
CLN3-259ENST00000637551 IGLV2-23P01705 113 aa14.38□□□□□ -0.11
CLN3-259ENST00000637551 CD74P04233 296 aa14.38□□□□□ -0.11
CLN3-259ENST00000637551 CD28P10747 220 aa14.38□□□□□ -0.11
CLN3-259ENST00000637551 CNTFRP26992 372 aa14.38□□□□□ -0.11
CLN3-259ENST00000637551 S100GP29377 79 aa14.38□□□□□ -0.11
CLN3-259ENST00000637551 TMEM267Q0VDI3 215 aaPredicted RBP14.38□□□□□ -0.11
CLN3-259ENST00000637551 PLGLAQ15195 96 aa14.38□□□□□ -0.11
CLN3-259ENST00000637551 CMTM1Q8IZ96 169 aa14.38□□□□□ -0.11
CLN3-259ENST00000637551 SECTM1Q8WVN6 248 aa14.38□□□□□ -0.11
CLN3-259ENST00000637551 DEDD2Q8WXF8 326 aa14.38□□□□□ -0.11
CLN3-259ENST00000637551 C6orf62Q9GZU0 229 aaPredicted RBP14.38□□□□□ -0.11
CLN3-259ENST00000637551 SH2D7A6NKC9 451 aaPredicted RBP14.37□□□□□ -0.11
CLN3-259ENST00000637551 ADARB2-AS1A8MUL3 147 aa14.37□□□□□ -0.11
CLN3-259ENST00000637551 GSTZ1O43708 216 aaPredicted RBP14.37□□□□□ -0.11
CLN3-259ENST00000637551 CRYGBP07316 175 aa14.37□□□□□ -0.11
CLN3-259ENST00000637551 RFX2P48378 723 aa14.37□□□□□ -0.11
CLN3-259ENST00000637551 TAS2R19P59542 299 aa14.37□□□□□ -0.11
CLN3-259ENST00000637551 CX3CL1P78423 397 aa14.37□□□□□ -0.11
CLN3-259ENST00000637551 AKIRIN2Q53H80 203 aa14.37□□□□□ -0.11
CLN3-259ENST00000637551 RNASE10Q5GAN6 216 aaKnown RBP14.37□□□□□ -0.11
CLN3-259ENST00000637551 TCTEX1D4Q5JR98 221 aa14.37□□□□□ -0.11
CLN3-259ENST00000637551 MFSD4AQ8N468 514 aa14.37□□□□□ -0.11
CLN3-259ENST00000637551 TMEM229BQ8NBD8 167 aa14.37□□□□□ -0.11
CLN3-259ENST00000637551 OR52I2Q8NH67 350 aa14.37□□□□□ -0.11
CLN3-259ENST00000637551 CITED2Q99967 270 aaPredicted RBP14.37□□□□□ -0.11
CLN3-259ENST00000637551 SOSTQ9BQB4 213 aa14.37□□□□□ -0.11
CLN3-259ENST00000637551 ZNF2Q9BSG1 426 aaPredicted RBP14.37□□□□□ -0.11
CLN3-259ENST00000637551 FBXL15Q9H469 300 aa14.37□□□□□ -0.11
CLN3-259ENST00000637551 BRI3O95415 125 aa14.36□□□□□ -0.11
CLN3-259ENST00000637551 CRYZL1O95825 349 aa14.36□□□□□ -0.11
CLN3-259ENST00000637551 HLA-DMAP28067 261 aa14.36□□□□□ -0.11
CLN3-259ENST00000637551 PPIFP30405 207 aaKnown RBP14.36□□□□□ -0.11
CLN3-259ENST00000637551 ECI1P42126 302 aa14.36□□□□□ -0.11
CLN3-259ENST00000637551 TSPAN5P62079 268 aa14.36□□□□□ -0.11
CLN3-259ENST00000637551 MEF2DQ14814 521 aa14.36□□□□□ -0.11
CLN3-259ENST00000637551 C19orf54Q5BKX5 351 aa14.36□□□□□ -0.11
CLN3-259ENST00000637551 CXorf66Q5JRM2 361 aaPredicted RBP14.36□□□□□ -0.11
CLN3-259ENST00000637551 POC5Q8NA72 575 aa14.36□□□□□ -0.11
CLN3-259ENST00000637551 MINDY2Q8NBR6 621 aa14.36□□□□□ -0.11
CLN3-259ENST00000637551 MYOZ3Q8TDC0 251 aa14.36□□□□□ -0.11
CLN3-259ENST00000637551 DGCR14Q96DF8 476 aaKnown RBP14.36□□□□□ -0.11
CLN3-259ENST00000637551 ZNF486Q96H40 463 aaPredicted RBP14.36□□□□□ -0.11
CLN3-259ENST00000637551 NOL4LQ96MY1 436 aaPredicted RBP14.36□□□□□ -0.11
CLN3-259ENST00000637551 KLK11Q9UBX7 282 aa14.36□□□□□ -0.11
CLN3-259ENST00000637551 TCRBV4S1A1TA0A5B7 111 aa14.35□□□□□ -0.11
CLN3-259ENST00000637551 ATP6V0E1O15342 81 aa14.35□□□□□ -0.11
CLN3-259ENST00000637551 SLC25A17O43808 307 aa14.35□□□□□ -0.11
CLN3-259ENST00000637551 HRASP01112 189 aa14.35□□□□□ -0.11
CLN3-259ENST00000637551 IGLV1-40P01703 118 aa14.35□□□□□ -0.11
CLN3-259ENST00000637551 PMP2P02689 132 aa14.35□□□□□ -0.11
CLN3-259ENST00000637551 IFNA6P05013 189 aa14.35□□□□□ -0.11
CLN3-259ENST00000637551 PSMB8P28062 276 aa14.35□□□□□ -0.11
CLN3-259ENST00000637551 GNRHRP30968 328 aa14.35□□□□□ -0.11
CLN3-259ENST00000637551 S100A5P33763 92 aa14.35□□□□□ -0.11
CLN3-259ENST00000637551 POU2AF1Q16633 256 aa14.35□□□□□ -0.11
CLN3-259ENST00000637551 ZNF818PQ6ZRF7 136 aa14.35□□□□□ -0.11
CLN3-259ENST00000637551 SLC38A6Q8IZM9 456 aa14.35□□□□□ -0.11
CLN3-259ENST00000637551 OR5M8Q8NGP6 311 aa14.35□□□□□ -0.11
CLN3-259ENST00000637551 TCTEX1D2Q8WW35 142 aa14.35□□□□□ -0.11
CLN3-259ENST00000637551 PLEKHA2Q9HB19 425 aa14.35□□□□□ -0.11
CLN3-259ENST00000637551 CCL28Q9NRJ3 127 aa14.35□□□□□ -0.11
CLN3-259ENST00000637551 COMMD9Q9P000 198 aa14.35□□□□□ -0.11
CLN3-259ENST00000637551 NOTCH1P46531 2555 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms