RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 ZFP36L1Q07352 338 aaKnown RBP3.37□□□□□ -1.87
SCN1A-214ENST00000637038 TESK1Q15569 626 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 PDZD11Q5EBL8 140 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 C9orf152Q5JTZ5 239 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF645Q8N7E2 425 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 OR1P1Q8NH06 330 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 CORO2AQ92828 525 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 GMPPAQ96IJ6 420 aaPredicted RBP3.37□□□□□ -1.87
SCN1A-214ENST00000637038 OR4C12Q96R67 309 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 HSD17B10Q99714 261 aaKnown RBP3.37□□□□□ -1.87
SCN1A-214ENST00000637038 TMEM204Q9BSN7 226 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 PROK2Q9HC23 129 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 MTCH1Q9NZJ7 389 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 RNF115Q9Y4L5 304 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 RELNP78509 3460 aa3.37□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF705GA8MUZ8 300 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-214ENST00000637038 NTN3O00634 580 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-214ENST00000637038 SYNGR1O43759 233 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 CA6P23280 308 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 DDTP30046 118 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 CDC34P49427 236 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-214ENST00000637038 FGF8P55075 233 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-214ENST00000637038 RBX1P62877 108 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 SLC10A1Q14973 349 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 OR1C1Q15619 314 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 SMIM21Q3B7S5 101 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF343Q6P1L6 599 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF880Q6PDB4 577 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 C16orf82Q7Z2V1 217 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 TUSC5Q8IXB3 177 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 TMEM178AQ8NBL3 297 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 OR4A16Q8NH70 328 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 RAB24Q969Q5 203 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 SNX22Q96L94 193 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 ABHD14AQ9BUJ0 271 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 OBP2BQ9NPH6 170 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 A0A1W2PPQ1 181 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 FAM166BA8MTA8 275 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 CXCL1P09341 107 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 GCH1P30793 250 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 RANP62826 216 aaKnown RBP3.36□□□□□ -1.87
SCN1A-214ENST00000637038 COX19Q49B96 90 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 LCE2AQ5TA79 106 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-214ENST00000637038 CST9LP1Q5W188 147 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 FAM90A2PQ658T7 463 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 C1orf174Q8IYL3 243 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 POM121L2Q96KW2 1035 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 RBKSQ9H477 322 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 SEPSECSQ9HD40 501 aaKnown RBP3.36□□□□□ -1.87
SCN1A-214ENST00000637038 CDC42EP3Q9UKI2 254 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 KNL1Q8NG31 2342 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 KALRNO60229 2985 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 LY6G6EA0A0G2JKS1 128 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 PPIHO43447 177 aaKnown RBP3.36□□□□□ -1.87
SCN1A-214ENST00000637038 HAND1O96004 215 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 GYPAP02724 150 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 ADH4P08319 380 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 KITLGP21583 273 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 GFRA1P56159 465 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 ERVFRD-1P60508 538 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 FBXW9Q5XUX1 488 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 PCSK4Q6UW60 755 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF497Q6ZNH5 498 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 FGFRL1Q8N441 504 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 OR1K1Q8NGR3 316 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 FRZBQ92765 325 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 C14orf144Q96I85 54 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 IMMP2LQ96T52 175 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 ATP6V0BQ99437 205 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 OR2D2Q9H210 308 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 CXXC4Q9H2H0 198 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF703Q9H7S9 590 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-214ENST00000637038 SLC25A22Q9H936 323 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 U3KQA8 63 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 TRAV9-1A0A075B6T8 112 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 TRAV24A0A0B4J272 114 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 C11orf94C9JXX5 98 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 PHOX2AO14813 284 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 OR2H2O95918 312 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 PGA5P0DJD9 388 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 RAB4AP20338 218 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 GPR12P47775 334 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 PAX9P55771 341 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 HERPUD1Q15011 391 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 PYY3Q5JQD4 70 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 PRAMEF5Q5TYX0 476 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 PRAMEF6Q5VXH4 476 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 SLC35E4Q6ICL7 350 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 PNPLA5Q7Z6Z6 429 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-214ENST00000637038 DRAM1Q8N682 238 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 FGFBP3Q8TAT2 258 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 PLPPR1Q8TBJ4 325 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 ZNF581Q9P0T4 197 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 HSPB7Q9UBY9 170 aa3.36□□□□□ -1.87
SCN1A-214ENST00000637038 SPTBN4Q9H254 2564 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 LRRC30A6NM36 301 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 FAM90A9PA6NNJ1 464 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 SCGB1D1O95968 90 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 KRASP01116 189 aa3.35□□□□□ -1.87
SCN1A-214ENST00000637038 RFPL3SP0C7P2 107 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms