RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 FAT1Q14517 4588 aa-0.64□□□□□ -2.51
SCN1A-211ENST00000635893 SYNRGQ9UMZ2 1314 aa-0.64□□□□□ -2.51
SCN1A-211ENST00000635893 ZNF106Q9H2Y7 1883 aaKnown RBP-0.65□□□□□ -2.51
SCN1A-211ENST00000635893 RYR3Q15413 4870 aa-0.65□□□□□ -2.51
SCN1A-211ENST00000635893 KIF24Q5T7B8 1368 aa-0.65□□□□□ -2.51
SCN1A-211ENST00000635893 A0A0J9YW62 118 aa-0.65□□□□□ -2.51
SCN1A-211ENST00000635893 GPR171O14626 319 aa-0.65□□□□□ -2.51
SCN1A-211ENST00000635893 GSTZ1O43708 216 aaPredicted RBP-0.65□□□□□ -2.51
SCN1A-211ENST00000635893 CYTH3O43739 400 aa-0.65□□□□□ -2.51
SCN1A-211ENST00000635893 RCVRNP35243 200 aa-0.65□□□□□ -2.51
SCN1A-211ENST00000635893 PEX19P40855 299 aa-0.65□□□□□ -2.51
SCN1A-211ENST00000635893 CRATP43155 626 aa-0.65□□□□□ -2.51
SCN1A-211ENST00000635893 RAB14P61106 215 aa-0.65□□□□□ -2.51
SCN1A-211ENST00000635893 C17orf78Q8N4C9 275 aa-0.65□□□□□ -2.51
SCN1A-211ENST00000635893 OR8B3Q8NGG8 313 aa-0.65□□□□□ -2.51
SCN1A-211ENST00000635893 OR13C8Q8NGS7 320 aa-0.65□□□□□ -2.51
SCN1A-211ENST00000635893 PATE1Q8WXA2 126 aa-0.65□□□□□ -2.51
SCN1A-211ENST00000635893 PPWD1Q96BP3 646 aaKnown RBP-0.65□□□□□ -2.51
SCN1A-211ENST00000635893 MRAP2Q96G30 205 aa-0.65□□□□□ -2.51
SCN1A-211ENST00000635893 ACY3Q96HD9 319 aa-0.65□□□□□ -2.51
SCN1A-211ENST00000635893 MYCBPQ99417 103 aaPredicted RBP-0.65□□□□□ -2.51
SCN1A-211ENST00000635893 TMBIM4Q9HC24 238 aa-0.65□□□□□ -2.51
SCN1A-211ENST00000635893 STMN3Q9NZ72 180 aa-0.65□□□□□ -2.51
SCN1A-211ENST00000635893 ALPK3Q96L96 1907 aa-0.66□□□□□ -2.51
SCN1A-211ENST00000635893 RP1P56715 2156 aa-0.66□□□□□ -2.51
SCN1A-211ENST00000635893 MED12Q93074 2177 aa-0.66□□□□□ -2.51
SCN1A-211ENST00000635893 A0A087WUU8 490 aa-0.66□□□□□ -2.52
SCN1A-211ENST00000635893 M0QYV0 167 aa-0.66□□□□□ -2.52
SCN1A-211ENST00000635893 FABP7O15540 132 aa-0.66□□□□□ -2.52
SCN1A-211ENST00000635893 CREBL2O60519 120 aaPredicted RBP-0.66□□□□□ -2.52
SCN1A-211ENST00000635893 OR10J1P30954 320 aa-0.66□□□□□ -2.52
SCN1A-211ENST00000635893 DEKP35659 375 aaKnown RBP-0.66□□□□□ -2.52
SCN1A-211ENST00000635893 CA7P43166 264 aa-0.66□□□□□ -2.52
SCN1A-211ENST00000635893 HERVK_113P63121 156 aa-0.66□□□□□ -2.52
SCN1A-211ENST00000635893 KRTAP19-7Q3SYF9 63 aa-0.66□□□□□ -2.52
SCN1A-211ENST00000635893 CAVIN4Q5BKX8 364 aa-0.66□□□□□ -2.52
SCN1A-211ENST00000635893 FAM27BQ5VT28 67 aa-0.66□□□□□ -2.52
SCN1A-211ENST00000635893 SYS1Q8N2H4 156 aa-0.66□□□□□ -2.52
SCN1A-211ENST00000635893 OR51H1Q8NH63 302 aa-0.66□□□□□ -2.52
SCN1A-211ENST00000635893 CHST6Q9GZX3 395 aa-0.66□□□□□ -2.52
SCN1A-211ENST00000635893 TMEM222Q9H0R3 208 aa-0.66□□□□□ -2.52
SCN1A-211ENST00000635893 OR5AC2Q9NZP5 309 aa-0.66□□□□□ -2.52
SCN1A-211ENST00000635893 NAT8Q9UHE5 227 aa-0.66□□□□□ -2.52
SCN1A-211ENST00000635893 UBR5O95071 2799 aaPredicted RBP-0.66□□□□□ -2.52
SCN1A-211ENST00000635893 PTPRZ1P23471 2315 aaPredicted RBP-0.67□□□□□ -2.52
SCN1A-211ENST00000635893 IRGMA1A4Y4 181 aa-0.67□□□□□ -2.52
SCN1A-211ENST00000635893 MRASO14807 208 aa-0.67□□□□□ -2.52
SCN1A-211ENST00000635893 NCR3O14931 201 aa-0.67□□□□□ -2.52
SCN1A-211ENST00000635893 KDELR3O43731 214 aa-0.67□□□□□ -2.52
SCN1A-211ENST00000635893 TFPTP0C1Z6 253 aa-0.67□□□□□ -2.52
SCN1A-211ENST00000635893 FXYD7P58549 80 aa-0.67□□□□□ -2.52
SCN1A-211ENST00000635893 HIST1H4AP62805 103 aaKnown RBP-0.67□□□□□ -2.52
SCN1A-211ENST00000635893 TMEM267Q0VDI3 215 aaPredicted RBP-0.67□□□□□ -2.52
SCN1A-211ENST00000635893 MESTQ5EB52 335 aa-0.67□□□□□ -2.52
SCN1A-211ENST00000635893 XKRXQ6PP77 449 aa-0.67□□□□□ -2.52
SCN1A-211ENST00000635893 TMCO2Q7Z6W1 182 aaPredicted RBP-0.67□□□□□ -2.52
SCN1A-211ENST00000635893 BAP18Q8IXM2 172 aa-0.67□□□□□ -2.52
SCN1A-211ENST00000635893 C1orf174Q8IYL3 243 aa-0.67□□□□□ -2.52
SCN1A-211ENST00000635893 LRRC34Q8IZ02 419 aa-0.67□□□□□ -2.52
SCN1A-211ENST00000635893 RPP25LQ8N5L8 163 aaKnown RBP-0.67□□□□□ -2.52
SCN1A-211ENST00000635893 Q8N814 137 aa-0.67□□□□□ -2.52
SCN1A-211ENST00000635893 ACBD4Q8NC06 268 aa-0.67□□□□□ -2.52
SCN1A-211ENST00000635893 OR11H6Q8NGC7 330 aa-0.67□□□□□ -2.52
SCN1A-211ENST00000635893 SGMS2Q8NHU3 365 aa-0.67□□□□□ -2.52
SCN1A-211ENST00000635893 TNFAIP8L1Q8WVP5 186 aa-0.67□□□□□ -2.52
SCN1A-211ENST00000635893 GNB1LQ9BYB4 327 aa-0.67□□□□□ -2.52
SCN1A-211ENST00000635893 HIVEP3Q5T1R4 2406 aa-0.67□□□□□ -2.52
SCN1A-211ENST00000635893 HYDINQ4G0P3 5121 aa-0.68□□□□□ -2.52
SCN1A-211ENST00000635893 EFCAB9A8MZ26 197 aa-0.68□□□□□ -2.52
SCN1A-211ENST00000635893 SDCBPO00560 298 aaPredicted RBP-0.68□□□□□ -2.52
SCN1A-211ENST00000635893 MBP02144 154 aa-0.68□□□□□ -2.52
SCN1A-211ENST00000635893 STAG3L3P0CL85 134 aa-0.68□□□□□ -2.52
SCN1A-211ENST00000635893 UBE2IP63279 158 aaKnown RBP-0.68□□□□□ -2.52
SCN1A-211ENST00000635893 TMEM249Q2WGJ8 235 aa-0.68□□□□□ -2.52
SCN1A-211ENST00000635893 ACSM3Q53FZ2 586 aa-0.68□□□□□ -2.52
SCN1A-211ENST00000635893 C6orf183Q5T699 404 aa-0.68□□□□□ -2.52
SCN1A-211ENST00000635893 C9orf64Q5T6V5 341 aa-0.68□□□□□ -2.52
SCN1A-211ENST00000635893 GDF5OSQ5U4N7 250 aa-0.68□□□□□ -2.52
SCN1A-211ENST00000635893 UBQLN4Q9NRR5 601 aa-0.68□□□□□ -2.52
SCN1A-211ENST00000635893 CISHQ9NSE2 258 aa-0.68□□□□□ -2.52
SCN1A-211ENST00000635893 SNX10Q9Y5X0 201 aa-0.68□□□□□ -2.52
SCN1A-211ENST00000635893 ZANQ9Y493 2812 aa-0.68□□□□□ -2.52
SCN1A-211ENST00000635893 ZFYVE26Q68DK2 2539 aa-0.68□□□□□ -2.52
SCN1A-211ENST00000635893 FAM208BQ5VWN6 2430 aa-0.68□□□□□ -2.52
SCN1A-211ENST00000635893 PTPRSQ13332 1948 aa-0.69□□□□□ -2.52
SCN1A-211ENST00000635893 A0A1W2PPV4 95 aa-0.69□□□□□ -2.52
SCN1A-211ENST00000635893 SNRNP200O75643 2136 aaKnown RBP-0.69□□□□□ -2.52
SCN1A-211ENST00000635893 BGNP21810 368 aa-0.69□□□□□ -2.52
SCN1A-211ENST00000635893 ALDH3A1P30838 453 aa-0.69□□□□□ -2.52
SCN1A-211ENST00000635893 EFNA4P52798 201 aa-0.69□□□□□ -2.52
SCN1A-211ENST00000635893 C1DQ13901 141 aaKnown RBP-0.69□□□□□ -2.52
SCN1A-211ENST00000635893 ZNF846Q147U1 533 aa-0.69□□□□□ -2.52
SCN1A-211ENST00000635893 SPINK6Q6UWN8 80 aa-0.69□□□□□ -2.52
SCN1A-211ENST00000635893 PID1Q7Z2X4 250 aa-0.69□□□□□ -2.52
SCN1A-211ENST00000635893 ATP5L2Q7Z4Y8 100 aa-0.69□□□□□ -2.52
SCN1A-211ENST00000635893 DHFR2Q86XF0 187 aa-0.69□□□□□ -2.52
SCN1A-211ENST00000635893 LGALS14Q8TCE9 139 aa-0.69□□□□□ -2.52
SCN1A-211ENST00000635893 RYR1P21817 5038 aa-0.69□□□□□ -2.52
SCN1A-211ENST00000635893 GOLGA6L10A6NI86 522 aa-0.7□□□□□ -2.52
SCN1A-211ENST00000635893 ATP8B1O43520 1251 aa-0.7□□□□□ -2.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms