RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 CCL28Q9NRJ3 127 aa16.3■□□□□ 0.2
CLN3-240ENST00000631023 RABL2AQ9UBK7 228 aaPredicted RBP16.3■□□□□ 0.2
CLN3-240ENST00000631023 RABL2BQ9UNT1 228 aa16.3■□□□□ 0.2
CLN3-240ENST00000631023 SLC25A17O43808 307 aa16.3■□□□□ 0.2
CLN3-240ENST00000631023 HRH1P35367 487 aa16.3■□□□□ 0.2
CLN3-240ENST00000631023 OSR1Q8TAX0 266 aaPredicted RBP16.3■□□□□ 0.2
CLN3-240ENST00000631023 FCAMRQ8WWV6 532 aa16.3■□□□□ 0.2
CLN3-240ENST00000631023 DIRAS2Q96HU8 199 aa16.3■□□□□ 0.2
CLN3-240ENST00000631023 ABHD1Q96SE0 405 aa16.3■□□□□ 0.2
CLN3-240ENST00000631023 DCUN1D5Q9BTE7 237 aa16.3■□□□□ 0.2
CLN3-240ENST00000631023 SLIRPQ9GZT3 109 aaKnown RBP16.3■□□□□ 0.2
CLN3-240ENST00000631023 PARP11Q9NR21 331 aa16.3■□□□□ 0.2
CLN3-240ENST00000631023 RSL24D1Q9UHA3 163 aaKnown RBP16.3■□□□□ 0.2
CLN3-240ENST00000631023 CRYZL1O95825 349 aa16.29■□□□□ 0.2
CLN3-240ENST00000631023 TSPAN5P62079 268 aa16.29■□□□□ 0.2
CLN3-240ENST00000631023 MFSD4AQ8N468 514 aa16.29■□□□□ 0.2
CLN3-240ENST00000631023 FAM110DQ8TAY7 271 aaPredicted RBP16.29■□□□□ 0.2
CLN3-240ENST00000631023 TCTEX1D2Q8WW35 142 aa16.29■□□□□ 0.2
CLN3-240ENST00000631023 ZNF2Q9BSG1 426 aaPredicted RBP16.29■□□□□ 0.2
CLN3-240ENST00000631023 ZFP57Q9NU63 452 aa16.29■□□□□ 0.2
CLN3-240ENST00000631023 TAS2R8Q9NYW2 309 aa16.29■□□□□ 0.2
CLN3-240ENST00000631023 A0A1W2PRX2 142 aa16.28■□□□□ 0.2
CLN3-240ENST00000631023 ZNF701M0R085 212 aaPredicted RBP16.28■□□□□ 0.2
CLN3-240ENST00000631023 FCN1O00602 326 aa16.28■□□□□ 0.2
CLN3-240ENST00000631023 ATP6V0E1O15342 81 aa16.28■□□□□ 0.2
CLN3-240ENST00000631023 FCGR3BO75015 233 aa16.28■□□□□ 0.2
CLN3-240ENST00000631023 CX3CL1P78423 397 aa16.28■□□□□ 0.2
CLN3-240ENST00000631023 MRPS10P82664 201 aaKnown RBP16.28■□□□□ 0.2
CLN3-240ENST00000631023 ACTBL2Q562R1 376 aa16.28■□□□□ 0.2
CLN3-240ENST00000631023 ZNF562Q6V9R5 426 aa16.28■□□□□ 0.2
CLN3-240ENST00000631023 PPP1R27Q86WC6 154 aa16.28■□□□□ 0.2
CLN3-240ENST00000631023 TMEM17Q86X19 198 aa16.28■□□□□ 0.2
CLN3-240ENST00000631023 MCFD2Q8NI22 146 aa16.28■□□□□ 0.2
CLN3-240ENST00000631023 R3HDM4Q96D70 268 aa16.28■□□□□ 0.2
CLN3-240ENST00000631023 CLCC1Q96S66 551 aa16.28■□□□□ 0.2
CLN3-240ENST00000631023 ADARB2-AS1A8MUL3 147 aa16.27■□□□□ 0.2
CLN3-240ENST00000631023 IGLV2-23P01705 113 aa16.27■□□□□ 0.2
CLN3-240ENST00000631023 TMEM267Q0VDI3 215 aaPredicted RBP16.27■□□□□ 0.2
CLN3-240ENST00000631023 VMA21Q3ZAQ7 101 aa16.27■□□□□ 0.2
CLN3-240ENST00000631023 RNASE12Q5GAN4 147 aaKnown RBP16.27■□□□□ 0.2
CLN3-240ENST00000631023 OR52I2Q8NH67 350 aa16.27■□□□□ 0.2
CLN3-240ENST00000631023 ABHD5Q8WTS1 349 aa16.27■□□□□ 0.2
CLN3-240ENST00000631023 MOB3AQ96BX8 217 aa16.27■□□□□ 0.2
CLN3-240ENST00000631023 RBM38Q9H0Z9 239 aaKnown RBP16.27■□□□□ 0.2
CLN3-240ENST00000631023 KLK11Q9UBX7 282 aa16.27■□□□□ 0.2
CLN3-240ENST00000631023 MTFP1Q9UDX5 166 aa16.27■□□□□ 0.2
CLN3-240ENST00000631023 GABARAPH6UMI1 98 aa16.26■□□□□ 0.19
CLN3-240ENST00000631023 KIR2DS2P43631 304 aa16.26■□□□□ 0.19
CLN3-240ENST00000631023 RPL30P62888 115 aaKnown RBP16.26■□□□□ 0.19
CLN3-240ENST00000631023 FOXE3Q13461 319 aa16.26■□□□□ 0.19
CLN3-240ENST00000631023 EIF4EBP1Q13541 118 aaPredicted RBP16.26■□□□□ 0.19
CLN3-240ENST00000631023 CXorf66Q5JRM2 361 aaPredicted RBP16.26■□□□□ 0.19
CLN3-240ENST00000631023 PYHIN1Q6K0P9 492 aa16.26■□□□□ 0.19
CLN3-240ENST00000631023 OR4S2Q8NH73 311 aa16.26■□□□□ 0.19
CLN3-240ENST00000631023 WSB1Q9Y6I7 421 aa16.26■□□□□ 0.19
CLN3-240ENST00000631023 TRAV41A0A0B4J266 112 aa16.26■□□□□ 0.19
CLN3-240ENST00000631023 CA2P00918 260 aa16.26■□□□□ 0.19
CLN3-240ENST00000631023 IGHG4P01861 327 aa16.26■□□□□ 0.19
CLN3-240ENST00000631023 ELANEP08246 267 aa16.26■□□□□ 0.19
CLN3-240ENST00000631023 CFHR3Q02985 330 aa16.26■□□□□ 0.19
CLN3-240ENST00000631023 CATR1Q13166 79 aa16.26■□□□□ 0.19
CLN3-240ENST00000631023 IL18Q14116 193 aa16.26■□□□□ 0.19
CLN3-240ENST00000631023 OR2B11Q5JQS5 317 aa16.26■□□□□ 0.19
CLN3-240ENST00000631023 TEX45Q8NA69 505 aa16.26■□□□□ 0.19
CLN3-240ENST00000631023 NXF2Q9GZY0 626 aaKnown RBP16.26■□□□□ 0.19
CLN3-240ENST00000631023 NOTCH3Q9UM47 2321 aa16.25■□□□□ 0.19
CLN3-240ENST00000631023 SRRM4A7MD48 611 aaKnown RBP16.25■□□□□ 0.19
CLN3-240ENST00000631023 TNFSF12O43508 249 aa16.25■□□□□ 0.19
CLN3-240ENST00000631023 CNIH1O95406 144 aa16.25■□□□□ 0.19
CLN3-240ENST00000631023 IFNA6P05013 189 aa16.25■□□□□ 0.19
CLN3-240ENST00000631023 PF4V1P10720 104 aa16.25■□□□□ 0.19
CLN3-240ENST00000631023 TBPP20226 339 aa16.25■□□□□ 0.19
CLN3-240ENST00000631023 UBE2KP61086 200 aa16.25■□□□□ 0.19
CLN3-240ENST00000631023 SSBP1Q04837 148 aaKnown RBP16.25■□□□□ 0.19
CLN3-240ENST00000631023 VAX1Q5SQQ9 334 aa16.25■□□□□ 0.19
CLN3-240ENST00000631023 LPCAT3Q6P1A2 487 aa16.25■□□□□ 0.19
CLN3-240ENST00000631023 ZNF818PQ6ZRF7 136 aa16.25■□□□□ 0.19
CLN3-240ENST00000631023 TPSG1Q9NRR2 321 aa16.25■□□□□ 0.19
CLN3-240ENST00000631023 G3V318 75 aa16.24■□□□□ 0.19
CLN3-240ENST00000631023 CRYGBP07316 175 aa16.24■□□□□ 0.19
CLN3-240ENST00000631023 PPIFP30405 207 aaKnown RBP16.24■□□□□ 0.19
CLN3-240ENST00000631023 SLC6A1P30531 599 aa16.24■□□□□ 0.19
CLN3-240ENST00000631023 GNRHRP30968 328 aa16.24■□□□□ 0.19
CLN3-240ENST00000631023 CRIP2P52943 208 aaPredicted RBP16.24■□□□□ 0.19
CLN3-240ENST00000631023 RPL23AP62750 156 aaKnown RBP16.24■□□□□ 0.19
CLN3-240ENST00000631023 NDPQ00604 133 aa16.24■□□□□ 0.19
CLN3-240ENST00000631023 FXYD3Q14802 87 aa16.24■□□□□ 0.19
CLN3-240ENST00000631023 RNASE10Q5GAN6 216 aaKnown RBP16.24■□□□□ 0.19
CLN3-240ENST00000631023 TMEM65Q6PI78 240 aa16.24■□□□□ 0.19
CLN3-240ENST00000631023 CMTM1Q8IZ96 169 aa16.24■□□□□ 0.19
CLN3-240ENST00000631023 TCTEX1D1Q8N7M0 179 aa16.24■□□□□ 0.19
CLN3-240ENST00000631023 CTDSPLO15194 276 aa16.23■□□□□ 0.19
CLN3-240ENST00000631023 ECSCRQ19T08 205 aa16.23■□□□□ 0.19
CLN3-240ENST00000631023 RNF152Q8N8N0 203 aa16.23■□□□□ 0.19
CLN3-240ENST00000631023 POC5Q8NA72 575 aa16.23■□□□□ 0.19
CLN3-240ENST00000631023 ARPC1AQ92747 370 aa16.23■□□□□ 0.19
CLN3-240ENST00000631023 GPHA2Q96T91 129 aa16.23■□□□□ 0.19
CLN3-240ENST00000631023 AIFM2Q9BRQ8 373 aa16.23■□□□□ 0.19
CLN3-240ENST00000631023 NUBP2Q9Y5Y2 271 aa16.23■□□□□ 0.19
CLN3-240ENST00000631023 CREBL2O60519 120 aaPredicted RBP16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms