RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 COX19Q49B96 90 aa9.14□□□□□ -0.95
UPF3A-212ENST00000619079 OR10J3Q5JRS4 329 aa9.14□□□□□ -0.95
UPF3A-212ENST00000619079 PHYHD1Q5SRE7 291 aa9.14□□□□□ -0.95
UPF3A-212ENST00000619079 MCEMP1Q8IX19 187 aa9.14□□□□□ -0.95
UPF3A-212ENST00000619079 PNKDQ8N490 385 aa9.14□□□□□ -0.95
UPF3A-212ENST00000619079 Q8N976 141 aa9.14□□□□□ -0.95
UPF3A-212ENST00000619079 OR2M3Q8NG83 312 aa9.14□□□□□ -0.95
UPF3A-212ENST00000619079 RAB1CQ92928 201 aa9.14□□□□□ -0.95
UPF3A-212ENST00000619079 OR6C1Q96RD1 312 aa9.14□□□□□ -0.95
UPF3A-212ENST00000619079 SPTBN4Q9H254 2564 aa9.14□□□□□ -0.95
UPF3A-212ENST00000619079 TRBV6-6A0A0A6YYG2 114 aa9.14□□□□□ -0.95
UPF3A-212ENST00000619079 DKK1O94907 266 aa9.14□□□□□ -0.95
UPF3A-212ENST00000619079 IGKV1-39P01597 117 aa9.14□□□□□ -0.95
UPF3A-212ENST00000619079 IGKV1D-39P04432 117 aa9.14□□□□□ -0.95
UPF3A-212ENST00000619079 TNFSF4P23510 183 aa9.14□□□□□ -0.95
UPF3A-212ENST00000619079 FBLN7Q53RD9 439 aa9.14□□□□□ -0.95
UPF3A-212ENST00000619079 ZNF324BQ6AW86 544 aaPredicted RBP9.14□□□□□ -0.95
UPF3A-212ENST00000619079 PCSK4Q6UW60 755 aa9.14□□□□□ -0.95
UPF3A-212ENST00000619079 SLC24A4Q8NFF2 622 aa9.14□□□□□ -0.95
UPF3A-212ENST00000619079 OR10P1Q8NGE3 313 aa9.14□□□□□ -0.95
UPF3A-212ENST00000619079 THAP3Q8WTV1 239 aaPredicted RBP9.14□□□□□ -0.95
UPF3A-212ENST00000619079 PIGCQ92535 297 aa9.14□□□□□ -0.95
UPF3A-212ENST00000619079 NPCDR1Q9BY65 106 aa9.14□□□□□ -0.95
UPF3A-212ENST00000619079 TBL2Q9Y4P3 447 aaKnown RBP9.14□□□□□ -0.95
UPF3A-212ENST00000619079 EXPH5Q8NEV8 1989 aa9.13□□□□□ -0.95
UPF3A-212ENST00000619079 LOC105371242A0A075B767 164 aa9.13□□□□□ -0.95
UPF3A-212ENST00000619079 PMP22Q01453 160 aa9.13□□□□□ -0.95
UPF3A-212ENST00000619079 OR1K1Q8NGR3 316 aa9.13□□□□□ -0.95
UPF3A-212ENST00000619079 KCNS1Q96KK3 526 aa9.13□□□□□ -0.95
UPF3A-212ENST00000619079 GNB1LQ9BYB4 327 aa9.13□□□□□ -0.95
UPF3A-212ENST00000619079 NRN1Q9NPD7 142 aa9.13□□□□□ -0.95
UPF3A-212ENST00000619079 ERRFI1Q9UJM3 462 aaPredicted RBP9.13□□□□□ -0.95
UPF3A-212ENST00000619079 LOXL2Q9Y4K0 774 aa9.13□□□□□ -0.95
UPF3A-212ENST00000619079 TRAV30A0A087WSZ9 112 aa9.13□□□□□ -0.95
UPF3A-212ENST00000619079 IGHV1-69-2A0A0G2JMI3 117 aa9.13□□□□□ -0.95
UPF3A-212ENST00000619079 NPIPB11E5RHQ5 1161 aa9.13□□□□□ -0.95
UPF3A-212ENST00000619079 RBFOX2O43251 390 aaKnown RBP eCLIP9.13□□□□□ -0.95
UPF3A-212ENST00000619079 TSPOP30536 169 aa9.13□□□□□ -0.95
UPF3A-212ENST00000619079 AMTP48728 403 aa9.13□□□□□ -0.95
UPF3A-212ENST00000619079 PMCHL1Q16048 86 aa9.13□□□□□ -0.95
UPF3A-212ENST00000619079 RNF151Q2KHN1 245 aa9.13□□□□□ -0.95
UPF3A-212ENST00000619079 HLA-DRB5Q30154 266 aa9.13□□□□□ -0.95
UPF3A-212ENST00000619079 KRTAP27-1Q3LI81 207 aa9.13□□□□□ -0.95
UPF3A-212ENST00000619079 WDR73Q6P4I2 378 aa9.13□□□□□ -0.95
UPF3A-212ENST00000619079 C19orf35Q6ZS72 473 aa9.13□□□□□ -0.95
UPF3A-212ENST00000619079 LINC00596Q86U02 117 aa9.13□□□□□ -0.95
UPF3A-212ENST00000619079 MYPOPQ86VE0 399 aaPredicted RBP9.13□□□□□ -0.95
UPF3A-212ENST00000619079 QTRT1Q9BXR0 403 aaKnown RBP9.13□□□□□ -0.95
UPF3A-212ENST00000619079 KNTC1P50748 2209 aa9.13□□□□□ -0.95
UPF3A-212ENST00000619079 WDR1O75083 606 aa9.12□□□□□ -0.95
UPF3A-212ENST00000619079 SPINK2P20155 84 aa9.12□□□□□ -0.95
UPF3A-212ENST00000619079 PTGDSP41222 190 aa9.12□□□□□ -0.95
UPF3A-212ENST00000619079 VWC2Q2TAL6 325 aa9.12□□□□□ -0.95
UPF3A-212ENST00000619079 TMPRSS7Q7RTY8 843 aa9.12□□□□□ -0.95
UPF3A-212ENST00000619079 TIPARPQ7Z3E1 657 aaKnown RBP9.12□□□□□ -0.95
UPF3A-212ENST00000619079 KMT5CQ86Y97 462 aa9.12□□□□□ -0.95
UPF3A-212ENST00000619079 OR56B2PQ8NGI1 322 aa9.12□□□□□ -0.95
UPF3A-212ENST00000619079 OR1L3Q8NH93 324 aa9.12□□□□□ -0.95
UPF3A-212ENST00000619079 FAM103A1Q9BTL3 118 aaKnown RBP9.12□□□□□ -0.95
UPF3A-212ENST00000619079 IGHV3-20A0A0C4DH32 117 aa9.12□□□□□ -0.95
UPF3A-212ENST00000619079 DPRXA6NFQ7 191 aa9.12□□□□□ -0.95
UPF3A-212ENST00000619079 SNURFLB1AK76 121 aa9.12□□□□□ -0.95
UPF3A-212ENST00000619079 CRYAAP02489 173 aa9.12□□□□□ -0.95
UPF3A-212ENST00000619079 BCL3P20749 454 aa9.12□□□□□ -0.95
UPF3A-212ENST00000619079 PRRX1P54821 245 aa9.12□□□□□ -0.95
UPF3A-212ENST00000619079 NFAM1Q8NET5 270 aaPredicted RBP9.12□□□□□ -0.95
UPF3A-212ENST00000619079 RDH5Q92781 318 aa9.12□□□□□ -0.95
UPF3A-212ENST00000619079 APOBEC3DQ96AK3 386 aaPredicted RBP9.12□□□□□ -0.95
UPF3A-212ENST00000619079 ZPBPQ9BS86 351 aa9.12□□□□□ -0.95
UPF3A-212ENST00000619079 OCIAD1Q9NX40 245 aa9.12□□□□□ -0.95
UPF3A-212ENST00000619079 PPIAL4AQ9Y536 164 aa9.12□□□□□ -0.95
UPF3A-212ENST00000619079 LY96Q9Y6Y9 160 aa9.12□□□□□ -0.95
UPF3A-212ENST00000619079 IGHV2-26A0A0B4J1V2 119 aa9.11□□□□□ -0.95
UPF3A-212ENST00000619079 CCL4P13236 92 aa9.11□□□□□ -0.95
UPF3A-212ENST00000619079 ATP5G3P48201 142 aa9.11□□□□□ -0.95
UPF3A-212ENST00000619079 LGALS4P56470 323 aa9.11□□□□□ -0.95
UPF3A-212ENST00000619079 RPEL1Q2QD12 228 aa9.11□□□□□ -0.95
UPF3A-212ENST00000619079 ZNF114Q8NC26 417 aa9.11□□□□□ -0.95
UPF3A-212ENST00000619079 VPS25Q9BRG1 176 aa9.11□□□□□ -0.95
UPF3A-212ENST00000619079 TMEM204Q9BSN7 226 aa9.11□□□□□ -0.95
UPF3A-212ENST00000619079 DERL1Q9BUN8 251 aa9.11□□□□□ -0.95
UPF3A-212ENST00000619079 SCNM1Q9BWG6 230 aa9.11□□□□□ -0.95
UPF3A-212ENST00000619079 FGF21Q9NSA1 209 aa9.11□□□□□ -0.95
UPF3A-212ENST00000619079 FREM2Q5SZK8 3169 aa9.11□□□□□ -0.95
UPF3A-212ENST00000619079 A0A1W2PPV4 95 aa9.11□□□□□ -0.95
UPF3A-212ENST00000619079 S1PR2O95136 353 aa9.11□□□□□ -0.95
UPF3A-212ENST00000619079 IER3P46695 156 aa9.11□□□□□ -0.95
UPF3A-212ENST00000619079 PCBD1P61457 104 aa9.11□□□□□ -0.95
UPF3A-212ENST00000619079 UNQ5815/PRO19632Q6UWF5 114 aa9.11□□□□□ -0.95
UPF3A-212ENST00000619079 ZDHHC23Q8IYP9 409 aa9.11□□□□□ -0.95
UPF3A-212ENST00000619079 FADS6Q8N9I5 356 aa9.11□□□□□ -0.95
UPF3A-212ENST00000619079 OR10G3Q8NGC4 313 aa9.11□□□□□ -0.95
UPF3A-212ENST00000619079 SFXN3Q9BWM7 321 aa9.11□□□□□ -0.95
UPF3A-212ENST00000619079 GNB4Q9HAV0 340 aa9.11□□□□□ -0.95
UPF3A-212ENST00000619079 SEC16AO15027 2179 aa9.1□□□□□ -0.95
UPF3A-212ENST00000619079 TRAPPC2LH3BP13 241 aa9.1□□□□□ -0.95
UPF3A-212ENST00000619079 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.1□□□□□ -0.95
UPF3A-212ENST00000619079 ZNF324O75467 553 aaPredicted RBP9.1□□□□□ -0.95
UPF3A-212ENST00000619079 EGR1P18146 543 aa9.1□□□□□ -0.95
UPF3A-212ENST00000619079 HINT1P49773 126 aaPredicted RBP9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms