RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 RRASP10301 218 aa13.09□□□□□ -0.31
CCDC28A-202ENST00000611852 GNRHRP30968 328 aa13.09□□□□□ -0.31
CCDC28A-202ENST00000611852 RPS16P62249 146 aaKnown RBP13.09□□□□□ -0.31
CCDC28A-202ENST00000611852 C5orf64Q2M2E5 130 aa13.09□□□□□ -0.31
CCDC28A-202ENST00000611852 RGS21Q2M5E4 152 aa13.09□□□□□ -0.31
CCDC28A-202ENST00000611852 ZNF66Q6ZN08 573 aa13.09□□□□□ -0.31
CCDC28A-202ENST00000611852 OR4D10Q8NGI6 311 aa13.09□□□□□ -0.31
CCDC28A-202ENST00000611852 GPHA2Q96T91 129 aa13.09□□□□□ -0.31
CCDC28A-202ENST00000611852 FXYD6Q9H0Q3 95 aa13.09□□□□□ -0.31
CCDC28A-202ENST00000611852 KIAA1456Q9P272 454 aa13.09□□□□□ -0.31
CCDC28A-202ENST00000611852 LINC01548A6NM66 108 aa13.08□□□□□ -0.31
CCDC28A-202ENST00000611852 RRHO14718 337 aa13.08□□□□□ -0.31
CCDC28A-202ENST00000611852 TNFSF12O43508 249 aa13.08□□□□□ -0.31
CCDC28A-202ENST00000611852 IFNA6P05013 189 aa13.08□□□□□ -0.31
CCDC28A-202ENST00000611852 CSF1P09603 554 aa13.08□□□□□ -0.31
CCDC28A-202ENST00000611852 CBX3Q13185 183 aa13.08□□□□□ -0.31
CCDC28A-202ENST00000611852 PSG5Q15238 335 aa13.08□□□□□ -0.31
CCDC28A-202ENST00000611852 TMEM177Q53S58 311 aa13.08□□□□□ -0.31
CCDC28A-202ENST00000611852 STEAP1BQ6NZ63 245 aa13.08□□□□□ -0.31
CCDC28A-202ENST00000611852 SLC35E3Q7Z769 313 aa13.08□□□□□ -0.31
CCDC28A-202ENST00000611852 ARRDC1Q8N5I2 433 aa13.08□□□□□ -0.31
CCDC28A-202ENST00000611852 WIPF2Q8TF74 440 aaPredicted RBP13.08□□□□□ -0.31
CCDC28A-202ENST00000611852 TSNAXQ99598 290 aaKnown RBP13.08□□□□□ -0.31
CCDC28A-202ENST00000611852 CITED1Q99966 193 aa13.08□□□□□ -0.31
CCDC28A-202ENST00000611852 HSPB9Q9BQS6 159 aa13.08□□□□□ -0.31
CCDC28A-202ENST00000611852 PRELID3BQ9Y3B1 194 aa13.08□□□□□ -0.31
CCDC28A-202ENST00000611852 FCGR3BO75015 233 aa13.08□□□□□ -0.32
CCDC28A-202ENST00000611852 SPDEFO95238 335 aa13.08□□□□□ -0.32
CCDC28A-202ENST00000611852 RAB3DO95716 219 aa13.08□□□□□ -0.32
CCDC28A-202ENST00000611852 IGLV2-23P01705 113 aa13.08□□□□□ -0.32
CCDC28A-202ENST00000611852 HLA-DRB1P01911 266 aa13.08□□□□□ -0.32
CCDC28A-202ENST00000611852 LGALS7P47929 136 aa13.08□□□□□ -0.32
CCDC28A-202ENST00000611852 BRWD1-AS2P59051 145 aa13.08□□□□□ -0.32
CCDC28A-202ENST00000611852 DEFA1P59665 94 aa13.08□□□□□ -0.32
CCDC28A-202ENST00000611852 DEFA3P59666 94 aa13.08□□□□□ -0.32
CCDC28A-202ENST00000611852 AADACL3Q5VUY0 350 aa13.08□□□□□ -0.32
CCDC28A-202ENST00000611852 TCTEX1D2Q8WW35 142 aa13.08□□□□□ -0.32
CCDC28A-202ENST00000611852 FBXL15Q9H469 300 aa13.08□□□□□ -0.32
CCDC28A-202ENST00000611852 ANKRD20A5PA0PJZ0 165 aa13.07□□□□□ -0.32
CCDC28A-202ENST00000611852 CRYZL1O95825 349 aa13.07□□□□□ -0.32
CCDC28A-202ENST00000611852 OR2B11Q5JQS5 317 aa13.07□□□□□ -0.32
CCDC28A-202ENST00000611852 LIN54Q6MZP7 749 aa13.07□□□□□ -0.32
CCDC28A-202ENST00000611852 LHFPL1Q86WI0 220 aa13.07□□□□□ -0.32
CCDC28A-202ENST00000611852 HARBI1Q96MB7 349 aa13.07□□□□□ -0.32
CCDC28A-202ENST00000611852 NOL4LQ96MY1 436 aaPredicted RBP13.07□□□□□ -0.32
CCDC28A-202ENST00000611852 SDHCQ99643 169 aaPredicted RBP13.07□□□□□ -0.32
CCDC28A-202ENST00000611852 THAP7Q9BT49 309 aaPredicted RBP13.07□□□□□ -0.32
CCDC28A-202ENST00000611852 METTL1Q9UBP6 276 aaKnown RBP13.07□□□□□ -0.32
CCDC28A-202ENST00000611852 SRRM4A7MD48 611 aaKnown RBP13.06□□□□□ -0.32
CCDC28A-202ENST00000611852 SHOXO15266 292 aa13.06□□□□□ -0.32
CCDC28A-202ENST00000611852 KCNAB3O43448 404 aa13.06□□□□□ -0.32
CCDC28A-202ENST00000611852 SLC25A17O43808 307 aa13.06□□□□□ -0.32
CCDC28A-202ENST00000611852 UCP3P55916 312 aa13.06□□□□□ -0.32
CCDC28A-202ENST00000611852 IFITM3Q01628 133 aa13.06□□□□□ -0.32
CCDC28A-202ENST00000611852 MEF2DQ14814 521 aa13.06□□□□□ -0.32
CCDC28A-202ENST00000611852 PLGLAQ15195 96 aa13.06□□□□□ -0.32
CCDC28A-202ENST00000611852 TRIQKQ629K1 86 aa13.06□□□□□ -0.32
CCDC28A-202ENST00000611852 FAAP20Q6NZ36 180 aa13.06□□□□□ -0.32
CCDC28A-202ENST00000611852 LPCAT3Q6P1A2 487 aa13.06□□□□□ -0.32
CCDC28A-202ENST00000611852 FOXRED2Q8IWF2 684 aa13.06□□□□□ -0.32
CCDC28A-202ENST00000611852 Q8N402 240 aa13.06□□□□□ -0.32
CCDC28A-202ENST00000611852 OSR1Q8TAX0 266 aaPredicted RBP13.06□□□□□ -0.32
CCDC28A-202ENST00000611852 PLXNB1O43157 2135 aa13.06□□□□□ -0.32
CCDC28A-202ENST00000611852 ANK2Q01484 3957 aa13.06□□□□□ -0.32
CCDC28A-202ENST00000611852 IGHV7-81A0A0B4J1V7 117 aa13.05□□□□□ -0.32
CCDC28A-202ENST00000611852 AP4M1O00189 453 aa13.05□□□□□ -0.32
CCDC28A-202ENST00000611852 GPR31O00270 319 aa13.05□□□□□ -0.32
CCDC28A-202ENST00000611852 FCN1O00602 326 aa13.05□□□□□ -0.32
CCDC28A-202ENST00000611852 ZNF735P0CB33 412 aa13.05□□□□□ -0.32
CCDC28A-202ENST00000611852 AKAIN1P0CW23 69 aa13.05□□□□□ -0.32
CCDC28A-202ENST00000611852 IL7P13232 177 aa13.05□□□□□ -0.32
CCDC28A-202ENST00000611852 CATR1Q13166 79 aa13.05□□□□□ -0.32
CCDC28A-202ENST00000611852 CENPVQ7Z7K6 275 aaPredicted RBP13.05□□□□□ -0.32
CCDC28A-202ENST00000611852 OR4C16Q8NGL9 310 aa13.05□□□□□ -0.32
CCDC28A-202ENST00000611852 OR4S2Q8NH73 311 aa13.05□□□□□ -0.32
CCDC28A-202ENST00000611852 TRIM63Q969Q1 353 aa13.05□□□□□ -0.32
CCDC28A-202ENST00000611852 RSRP1Q9BUV0 290 aa13.05□□□□□ -0.32
CCDC28A-202ENST00000611852 LINC00527Q9UJ94 153 aa13.05□□□□□ -0.32
CCDC28A-202ENST00000611852 PGLYRP1O75594 196 aaPredicted RBP13.04□□□□□ -0.32
CCDC28A-202ENST00000611852 CRYGBP07316 175 aa13.04□□□□□ -0.32
CCDC28A-202ENST00000611852 C10orf99Q6UWK7 81 aa13.04□□□□□ -0.32
CCDC28A-202ENST00000611852 CMTM1Q8IZ96 169 aa13.04□□□□□ -0.32
CCDC28A-202ENST00000611852 SLC38A6Q8IZM9 456 aa13.04□□□□□ -0.32
CCDC28A-202ENST00000611852 STPG2Q8N412 459 aa13.04□□□□□ -0.32
CCDC28A-202ENST00000611852 C11orf44Q8N8P7 122 aa13.04□□□□□ -0.32
CCDC28A-202ENST00000611852 MINDY2Q8NBR6 621 aa13.04□□□□□ -0.32
CCDC28A-202ENST00000611852 OR5AU1Q8NGC0 362 aa13.04□□□□□ -0.32
CCDC28A-202ENST00000611852 OR51H1Q8NH63 302 aa13.04□□□□□ -0.32
CCDC28A-202ENST00000611852 TERB2Q8NHR7 220 aa13.04□□□□□ -0.32
CCDC28A-202ENST00000611852 CHPT1Q8WUD6 406 aa13.04□□□□□ -0.32
CCDC28A-202ENST00000611852 OR51J1Q9H342 316 aa13.04□□□□□ -0.32
CCDC28A-202ENST00000611852 TPSG1Q9NRR2 321 aa13.04□□□□□ -0.32
CCDC28A-202ENST00000611852 RAMP3O60896 148 aa13.03□□□□□ -0.32
CCDC28A-202ENST00000611852 RLN1P04808 185 aa13.03□□□□□ -0.32
CCDC28A-202ENST00000611852 IGF1P05019 195 aa13.03□□□□□ -0.32
CCDC28A-202ENST00000611852 KIR2DS2P43631 304 aa13.03□□□□□ -0.32
CCDC28A-202ENST00000611852 INPP1P49441 399 aa13.03□□□□□ -0.32
CCDC28A-202ENST00000611852 CX3CL1P78423 397 aa13.03□□□□□ -0.32
CCDC28A-202ENST00000611852 BAK1Q16611 211 aa13.03□□□□□ -0.32
CCDC28A-202ENST00000611852 TRIM16LQ309B1 348 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms