RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 ACTL6BO94805 426 aa15.22■□□□□ 0.03
UPF1-212ENST00000601689 IGHG4P01861 327 aa15.22■□□□□ 0.03
UPF1-212ENST00000601689 CD33P20138 364 aa15.22■□□□□ 0.03
UPF1-212ENST00000601689 RCVRNP35243 200 aa15.22■□□□□ 0.03
UPF1-212ENST00000601689 KIR2DS2P43631 304 aa15.22■□□□□ 0.03
UPF1-212ENST00000601689 CX3CL1P78423 397 aa15.22■□□□□ 0.03
UPF1-212ENST00000601689 TCTEX1D4Q5JR98 221 aa15.22■□□□□ 0.03
UPF1-212ENST00000601689 KLHL30-AS1Q8NEE0 82 aa15.22■□□□□ 0.03
UPF1-212ENST00000601689 OR6F1Q8NGZ6 308 aa15.22■□□□□ 0.03
UPF1-212ENST00000601689 OR4S2Q8NH73 311 aa15.22■□□□□ 0.03
UPF1-212ENST00000601689 SNAPC3Q92966 411 aa15.22■□□□□ 0.03
UPF1-212ENST00000601689 RBMXL1Q96E39 390 aaKnown RBP15.22■□□□□ 0.03
UPF1-212ENST00000601689 RABL2AQ9UBK7 228 aaPredicted RBP15.22■□□□□ 0.03
UPF1-212ENST00000601689 RABL2BQ9UNT1 228 aa15.22■□□□□ 0.03
UPF1-212ENST00000601689 WSB1Q9Y6I7 421 aa15.22■□□□□ 0.03
UPF1-212ENST00000601689 CA2P00918 260 aa15.21■□□□□ 0.03
UPF1-212ENST00000601689 PMP2P02689 132 aa15.21■□□□□ 0.03
UPF1-212ENST00000601689 NAT1P18440 290 aa15.21■□□□□ 0.03
UPF1-212ENST00000601689 DYRK1AQ13627 763 aa15.21■□□□□ 0.03
UPF1-212ENST00000601689 ECSCRQ19T08 205 aa15.21■□□□□ 0.03
UPF1-212ENST00000601689 ACTBL2Q562R1 376 aa15.21■□□□□ 0.03
UPF1-212ENST00000601689 PYHIN1Q6K0P9 492 aa15.21■□□□□ 0.03
UPF1-212ENST00000601689 TEX45Q8NA69 505 aa15.21■□□□□ 0.03
UPF1-212ENST00000601689 POC5Q8NA72 575 aa15.21■□□□□ 0.03
UPF1-212ENST00000601689 VSTM2AQ8TAG5 236 aa15.21■□□□□ 0.03
UPF1-212ENST00000601689 GPX8Q8TED1 209 aa15.21■□□□□ 0.03
UPF1-212ENST00000601689 CCDC59Q9P031 241 aaKnown RBP15.21■□□□□ 0.03
UPF1-212ENST00000601689 IGKV1D-13A0A0B4J2D9 117 aa15.2■□□□□ 0.02
UPF1-212ENST00000601689 LINC00473A8K010 186 aa15.2■□□□□ 0.02
UPF1-212ENST00000601689 ADARB2-AS1A8MUL3 147 aa15.2■□□□□ 0.02
UPF1-212ENST00000601689 IGKV1-13P0DP09 117 aa15.2■□□□□ 0.02
UPF1-212ENST00000601689 FXYD3Q14802 87 aa15.2■□□□□ 0.02
UPF1-212ENST00000601689 SPCS2Q15005 226 aa15.2■□□□□ 0.02
UPF1-212ENST00000601689 LPCAT3Q6P1A2 487 aa15.2■□□□□ 0.02
UPF1-212ENST00000601689 DHRS11Q6UWP2 260 aa15.2■□□□□ 0.02
UPF1-212ENST00000601689 OVCH2Q7RTZ1 564 aa15.2■□□□□ 0.02
UPF1-212ENST00000601689 TMEM17Q86X19 198 aa15.2■□□□□ 0.02
UPF1-212ENST00000601689 ZNF695Q8IW36 515 aa15.2■□□□□ 0.02
UPF1-212ENST00000601689 CMTM1Q8IZ96 169 aa15.2■□□□□ 0.02
UPF1-212ENST00000601689 MFSD4AQ8N468 514 aa15.2■□□□□ 0.02
UPF1-212ENST00000601689 DDB2Q92466 427 aa15.2■□□□□ 0.02
UPF1-212ENST00000601689 ARPC1AQ92747 370 aa15.2■□□□□ 0.02
UPF1-212ENST00000601689 TMEM68Q96MH6 324 aa15.2■□□□□ 0.02
UPF1-212ENST00000601689 ZNF2Q9BSG1 426 aaPredicted RBP15.2■□□□□ 0.02
UPF1-212ENST00000601689 TAS2R8Q9NYW2 309 aa15.2■□□□□ 0.02
UPF1-212ENST00000601689 ANAPC10Q9UM13 185 aa15.2■□□□□ 0.02
UPF1-212ENST00000601689 A3GALT2U3KPV4 340 aa15.2■□□□□ 0.02
UPF1-212ENST00000601689 PLXNB1O43157 2135 aa15.19■□□□□ 0.02
UPF1-212ENST00000601689 A0A1W2PN81 502 aa15.19■□□□□ 0.02
UPF1-212ENST00000601689 HRASP01112 189 aa15.19■□□□□ 0.02
UPF1-212ENST00000601689 IFNA6P05013 189 aa15.19■□□□□ 0.02
UPF1-212ENST00000601689 HLA-DMAP28067 261 aa15.19■□□□□ 0.02
UPF1-212ENST00000601689 CHRNA7P36544 502 aa15.19■□□□□ 0.02
UPF1-212ENST00000601689 CDX1P47902 265 aaPredicted RBP15.19■□□□□ 0.02
UPF1-212ENST00000601689 RFX2P48378 723 aa15.19■□□□□ 0.02
UPF1-212ENST00000601689 UBE2KP61086 200 aa15.19■□□□□ 0.02
UPF1-212ENST00000601689 GNB1P62873 340 aa15.19■□□□□ 0.02
UPF1-212ENST00000601689 AKIRIN2Q53H80 203 aa15.19■□□□□ 0.02
UPF1-212ENST00000601689 UNQ5815/PRO19632Q6UWF5 114 aa15.19■□□□□ 0.02
UPF1-212ENST00000601689 OR5M8Q8NGP6 311 aa15.19■□□□□ 0.02
UPF1-212ENST00000601689 FCAMRQ8WWV6 532 aa15.19■□□□□ 0.02
UPF1-212ENST00000601689 CCL28Q9NRJ3 127 aa15.19■□□□□ 0.02
UPF1-212ENST00000601689 FOXA2Q9Y261 457 aaPredicted RBP15.19■□□□□ 0.02
UPF1-212ENST00000601689 MGAM2Q2M2H8 2515 aa15.19■□□□□ 0.02
UPF1-212ENST00000601689 G3V318 75 aa15.18■□□□□ 0.02
UPF1-212ENST00000601689 FCN1O00602 326 aa15.18■□□□□ 0.02
UPF1-212ENST00000601689 RPLP1P05386 114 aaKnown RBP15.18■□□□□ 0.02
UPF1-212ENST00000601689 HRH1P35367 487 aa15.18■□□□□ 0.02
UPF1-212ENST00000601689 CRIP2P52943 208 aaPredicted RBP15.18■□□□□ 0.02
UPF1-212ENST00000601689 MRPS10P82664 201 aaKnown RBP15.18■□□□□ 0.02
UPF1-212ENST00000601689 RNF152Q8N8N0 203 aa15.18■□□□□ 0.02
UPF1-212ENST00000601689 CD300LFQ8TDQ1 290 aa15.18■□□□□ 0.02
UPF1-212ENST00000601689 ISOC1Q96CN7 298 aa15.18■□□□□ 0.02
UPF1-212ENST00000601689 C5orf30Q96GV9 206 aa15.18■□□□□ 0.02
UPF1-212ENST00000601689 PHB2Q99623 299 aa15.18■□□□□ 0.02
UPF1-212ENST00000601689 C6orf62Q9GZU0 229 aaPredicted RBP15.18■□□□□ 0.02
UPF1-212ENST00000601689 DUS4LO95620 317 aaKnown RBP15.17■□□□□ 0.02
UPF1-212ENST00000601689 PSMB8P28062 276 aa15.17■□□□□ 0.02
UPF1-212ENST00000601689 PPIFP30405 207 aaKnown RBP15.17■□□□□ 0.02
UPF1-212ENST00000601689 MYCNOSP40205 109 aa15.17■□□□□ 0.02
UPF1-212ENST00000601689 CFHR3Q02985 330 aa15.17■□□□□ 0.02
UPF1-212ENST00000601689 OR2B11Q5JQS5 317 aa15.17■□□□□ 0.02
UPF1-212ENST00000601689 GRPEL2Q8TAA5 225 aa15.17■□□□□ 0.02
UPF1-212ENST00000601689 DIRAS2Q96HU8 199 aa15.17■□□□□ 0.02
UPF1-212ENST00000601689 GPR61Q9BZJ8 451 aa15.17■□□□□ 0.02
UPF1-212ENST00000601689 NUBP2Q9Y5Y2 271 aa15.17■□□□□ 0.02
UPF1-212ENST00000601689 H3BMQ9 156 aa15.16■□□□□ 0.02
UPF1-212ENST00000601689 TNFSF12O43508 249 aa15.16■□□□□ 0.02
UPF1-212ENST00000601689 IGLV2-14P01704 120 aa15.16■□□□□ 0.02
UPF1-212ENST00000601689 IGLV2-23P01705 113 aa15.16■□□□□ 0.02
UPF1-212ENST00000601689 TBPP20226 339 aa15.16■□□□□ 0.02
UPF1-212ENST00000601689 AADACL3Q5VUY0 350 aa15.16■□□□□ 0.02
UPF1-212ENST00000601689 C8orf86Q6ZUL3 223 aa15.16■□□□□ 0.02
UPF1-212ENST00000601689 MMD2Q8IY49 270 aa15.16■□□□□ 0.02
UPF1-212ENST00000601689 LFNGQ8NES3 379 aa15.16■□□□□ 0.02
UPF1-212ENST00000601689 DYNC2LI1Q8TCX1 351 aa15.16■□□□□ 0.02
UPF1-212ENST00000601689 MOB3AQ96BX8 217 aa15.16■□□□□ 0.02
UPF1-212ENST00000601689 UBE2E2Q96LR5 201 aa15.16■□□□□ 0.02
UPF1-212ENST00000601689 SLA2Q9H6Q3 261 aa15.16■□□□□ 0.02
UPF1-212ENST00000601689 ZNF355PQ9NSJ1 428 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms