RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 KIAA0141Q14154 515 aaPredicted RBP12.6□□□□□ -0.39
TRIM28-213ENST00000598355 SPCS2Q15005 226 aa12.6□□□□□ -0.39
TRIM28-213ENST00000598355 CDK10Q15131 360 aa12.6□□□□□ -0.39
TRIM28-213ENST00000598355 BEAN1Q3B7T3 259 aa12.6□□□□□ -0.39
TRIM28-213ENST00000598355 KCTD9Q7L273 389 aa12.6□□□□□ -0.39
TRIM28-213ENST00000598355 PPP1R27Q86WC6 154 aa12.6□□□□□ -0.39
TRIM28-213ENST00000598355 ZNF695Q8IW36 515 aa12.6□□□□□ -0.39
TRIM28-213ENST00000598355 LINC00482Q8N8I6 264 aa12.6□□□□□ -0.39
TRIM28-213ENST00000598355 OSR1Q8TAX0 266 aaPredicted RBP12.6□□□□□ -0.39
TRIM28-213ENST00000598355 GIMAP1Q8WWP7 306 aa12.6□□□□□ -0.39
TRIM28-213ENST00000598355 P2RX4Q99571 388 aa12.6□□□□□ -0.39
TRIM28-213ENST00000598355 HSD17B10Q99714 261 aaKnown RBP12.6□□□□□ -0.39
TRIM28-213ENST00000598355 SCPEP1Q9HB40 452 aa12.6□□□□□ -0.39
TRIM28-213ENST00000598355 IFT46Q9NQC8 304 aa12.6□□□□□ -0.39
TRIM28-213ENST00000598355 G3V4G9 280 aa12.59□□□□□ -0.39
TRIM28-213ENST00000598355 TPPPO94811 219 aa12.59□□□□□ -0.39
TRIM28-213ENST00000598355 RPL5P46777 297 aaKnown RBP12.59□□□□□ -0.39
TRIM28-213ENST00000598355 TMBIM6P55061 237 aa12.59□□□□□ -0.39
TRIM28-213ENST00000598355 CBX3Q13185 183 aa12.59□□□□□ -0.39
TRIM28-213ENST00000598355 PLGLAQ15195 96 aa12.59□□□□□ -0.39
TRIM28-213ENST00000598355 MZT2AQ6P582 158 aa12.59□□□□□ -0.39
TRIM28-213ENST00000598355 ZNF66Q6ZN08 573 aa12.59□□□□□ -0.39
TRIM28-213ENST00000598355 LCNL1Q6ZST4 164 aa12.59□□□□□ -0.39
TRIM28-213ENST00000598355 C8orf86Q6ZUL3 223 aa12.59□□□□□ -0.39
TRIM28-213ENST00000598355 KLHL30-AS1Q8NEE0 82 aa12.59□□□□□ -0.39
TRIM28-213ENST00000598355 WSB1Q9Y6I7 421 aa12.59□□□□□ -0.39
TRIM28-213ENST00000598355 J3QRK9 145 aa12.58□□□□□ -0.4
TRIM28-213ENST00000598355 SULT1C2O00338 296 aa12.58□□□□□ -0.4
TRIM28-213ENST00000598355 ARPC1BO15143 372 aaKnown RBP12.58□□□□□ -0.4
TRIM28-213ENST00000598355 SHOXO15266 292 aa12.58□□□□□ -0.4
TRIM28-213ENST00000598355 CRYZL1O95825 349 aa12.58□□□□□ -0.4
TRIM28-213ENST00000598355 PF4P02776 101 aa12.58□□□□□ -0.4
TRIM28-213ENST00000598355 BRWD1-AS2P59051 145 aa12.58□□□□□ -0.4
TRIM28-213ENST00000598355 TAS2R46P59540 309 aa12.58□□□□□ -0.4
TRIM28-213ENST00000598355 UBE2KP61086 200 aa12.58□□□□□ -0.4
TRIM28-213ENST00000598355 DEFA6Q01524 100 aa12.58□□□□□ -0.4
TRIM28-213ENST00000598355 DYRK1AQ13627 763 aa12.58□□□□□ -0.4
TRIM28-213ENST00000598355 AKIRIN2Q53H80 203 aa12.58□□□□□ -0.4
TRIM28-213ENST00000598355 DHRS11Q6UWP2 260 aa12.58□□□□□ -0.4
TRIM28-213ENST00000598355 CLVS1Q8IUQ0 354 aaPredicted RBP12.58□□□□□ -0.4
TRIM28-213ENST00000598355 TEX45Q8NA69 505 aa12.58□□□□□ -0.4
TRIM28-213ENST00000598355 ZBTB34Q8NCN2 500 aa12.58□□□□□ -0.4
TRIM28-213ENST00000598355 DYNC2LI1Q8TCX1 351 aa12.58□□□□□ -0.4
TRIM28-213ENST00000598355 C4orf3Q8WVX3 66 aa12.58□□□□□ -0.4
TRIM28-213ENST00000598355 ARPC1AQ92747 370 aa12.58□□□□□ -0.4
TRIM28-213ENST00000598355 FOXA2Q9Y261 457 aaPredicted RBP12.58□□□□□ -0.4
TRIM28-213ENST00000598355 FCER2P06734 321 aa12.57□□□□□ -0.4
TRIM28-213ENST00000598355 RUNX1Q01196 453 aa12.57□□□□□ -0.4
TRIM28-213ENST00000598355 PJVKQ0ZLH3 352 aa12.57□□□□□ -0.4
TRIM28-213ENST00000598355 FHL3Q13643 280 aa12.57□□□□□ -0.4
TRIM28-213ENST00000598355 ECSCRQ19T08 205 aa12.57□□□□□ -0.4
TRIM28-213ENST00000598355 LYSMD2Q8IV50 215 aa12.57□□□□□ -0.4
TRIM28-213ENST00000598355 MRPL41Q8IXM3 137 aaKnown RBP12.57□□□□□ -0.4
TRIM28-213ENST00000598355 SECTM1Q8WVN6 248 aa12.57□□□□□ -0.4
TRIM28-213ENST00000598355 MOB3AQ96BX8 217 aa12.57□□□□□ -0.4
TRIM28-213ENST00000598355 UBE2E2Q96LR5 201 aa12.57□□□□□ -0.4
TRIM28-213ENST00000598355 KLK15Q9H2R5 256 aa12.57□□□□□ -0.4
TRIM28-213ENST00000598355 MIXL1Q9H2W2 232 aa12.57□□□□□ -0.4
TRIM28-213ENST00000598355 CCL28Q9NRJ3 127 aa12.57□□□□□ -0.4
TRIM28-213ENST00000598355 EHFQ9NZC4 300 aa12.57□□□□□ -0.4
TRIM28-213ENST00000598355 CCDC59Q9P031 241 aaKnown RBP12.57□□□□□ -0.4
TRIM28-213ENST00000598355 MRPS7Q9Y2R9 242 aaKnown RBP12.57□□□□□ -0.4
TRIM28-213ENST00000598355 PRELID3BQ9Y3B1 194 aa12.57□□□□□ -0.4
TRIM28-213ENST00000598355 SMIM31A0A1B0GVY4 71 aa12.56□□□□□ -0.4
TRIM28-213ENST00000598355 WIPF1O43516 503 aa12.56□□□□□ -0.4
TRIM28-213ENST00000598355 FCGR3BO75015 233 aa12.56□□□□□ -0.4
TRIM28-213ENST00000598355 RCVRNP35243 200 aa12.56□□□□□ -0.4
TRIM28-213ENST00000598355 MYCNOSP40205 109 aa12.56□□□□□ -0.4
TRIM28-213ENST00000598355 C1QL4Q86Z23 238 aa12.56□□□□□ -0.4
TRIM28-213ENST00000598355 MFSD4AQ8N468 514 aa12.56□□□□□ -0.4
TRIM28-213ENST00000598355 ZNF491Q8N8L2 437 aa12.56□□□□□ -0.4
TRIM28-213ENST00000598355 OR4S2Q8NH73 311 aa12.56□□□□□ -0.4
TRIM28-213ENST00000598355 RAX2Q96IS3 184 aa12.56□□□□□ -0.4
TRIM28-213ENST00000598355 FAM103A1Q9BTL3 118 aaKnown RBP12.56□□□□□ -0.4
TRIM28-213ENST00000598355 A0A1W2PN81 502 aa12.55□□□□□ -0.4
TRIM28-213ENST00000598355 NUDT19A8MXV4 375 aa12.55□□□□□ -0.4
TRIM28-213ENST00000598355 I3L521 148 aa12.55□□□□□ -0.4
TRIM28-213ENST00000598355 RBFOX2O43251 390 aaKnown RBP eCLIP12.55□□□□□ -0.4
TRIM28-213ENST00000598355 SAA1P0DJI8 122 aaPredicted RBP12.55□□□□□ -0.4
TRIM28-213ENST00000598355 CD33P20138 364 aa12.55□□□□□ -0.4
TRIM28-213ENST00000598355 HRH1P35367 487 aa12.55□□□□□ -0.4
TRIM28-213ENST00000598355 CHRNA7P36544 502 aa12.55□□□□□ -0.4
TRIM28-213ENST00000598355 RFX2P48378 723 aa12.55□□□□□ -0.4
TRIM28-213ENST00000598355 RAB9AP51151 201 aa12.55□□□□□ -0.4
TRIM28-213ENST00000598355 TMEM267Q0VDI3 215 aaPredicted RBP12.55□□□□□ -0.4
TRIM28-213ENST00000598355 FXYD3Q14802 87 aa12.55□□□□□ -0.4
TRIM28-213ENST00000598355 PRSS8Q16651 343 aa12.55□□□□□ -0.4
TRIM28-213ENST00000598355 VMA21Q3ZAQ7 101 aa12.55□□□□□ -0.4
TRIM28-213ENST00000598355 OXLD1Q5BKU9 147 aa12.55□□□□□ -0.4
TRIM28-213ENST00000598355 ASPHD1Q5U4P2 390 aa12.55□□□□□ -0.4
TRIM28-213ENST00000598355 PYHIN1Q6K0P9 492 aa12.55□□□□□ -0.4
TRIM28-213ENST00000598355 SNX29P2Q8IUI4 249 aa12.55□□□□□ -0.4
TRIM28-213ENST00000598355 OR5M8Q8NGP6 311 aa12.55□□□□□ -0.4
TRIM28-213ENST00000598355 OR5H2Q8NGV7 314 aa12.55□□□□□ -0.4
TRIM28-213ENST00000598355 TCTEX1D2Q8WW35 142 aa12.55□□□□□ -0.4
TRIM28-213ENST00000598355 RCC1LQ96I51 464 aaKnown RBP12.55□□□□□ -0.4
TRIM28-213ENST00000598355 CLCC1Q96S66 551 aa12.55□□□□□ -0.4
TRIM28-213ENST00000598355 SLC5A7Q9GZV3 580 aa12.55□□□□□ -0.4
TRIM28-213ENST00000598355 FXYD6Q9H0Q3 95 aa12.55□□□□□ -0.4
TRIM28-213ENST00000598355 TAS2R8Q9NYW2 309 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms