RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 DNAH9Q9NYC9 4486 aa7.59□□□□□ -1.19
TRIM28-208ENST00000597172 IGHV1-3A0A0C4DH29 117 aa7.58□□□□□ -1.2
TRIM28-208ENST00000597172 TEX13DA0A0J9YY54 714 aaPredicted RBP7.58□□□□□ -1.2
TRIM28-208ENST00000597172 C9orf170A2RU37 121 aa7.58□□□□□ -1.2
TRIM28-208ENST00000597172 M0QZ24 198 aa7.58□□□□□ -1.2
TRIM28-208ENST00000597172 SFT2D2O95562 160 aa7.58□□□□□ -1.2
TRIM28-208ENST00000597172 DHFRP00374 187 aa7.58□□□□□ -1.2
TRIM28-208ENST00000597172 PRB2P02812 416 aaPredicted RBP7.58□□□□□ -1.2
TRIM28-208ENST00000597172 GAPDHP04406 335 aaKnown RBP7.58□□□□□ -1.2
TRIM28-208ENST00000597172 F2RP25116 425 aa7.58□□□□□ -1.2
TRIM28-208ENST00000597172 IL3RAP26951 378 aa7.58□□□□□ -1.2
TRIM28-208ENST00000597172 SAA4P35542 130 aa7.58□□□□□ -1.2
TRIM28-208ENST00000597172 LGALS4P56470 323 aa7.58□□□□□ -1.2
TRIM28-208ENST00000597172 TAS2R31P59538 309 aa7.58□□□□□ -1.2
TRIM28-208ENST00000597172 UBE2MP61081 183 aaKnown RBP7.58□□□□□ -1.2
TRIM28-208ENST00000597172 ZNF816Q0VGE8 651 aaPredicted RBP7.58□□□□□ -1.2
TRIM28-208ENST00000597172 DHRS2Q13268 280 aa7.58□□□□□ -1.2
TRIM28-208ENST00000597172 SP6Q3SY56 376 aa7.58□□□□□ -1.2
TRIM28-208ENST00000597172 ZNF585BQ52M93 769 aa7.58□□□□□ -1.2
TRIM28-208ENST00000597172 GPR157Q5UAW9 335 aa7.58□□□□□ -1.2
TRIM28-208ENST00000597172 KCTD9Q7L273 389 aa7.58□□□□□ -1.2
TRIM28-208ENST00000597172 TGIF2LXQ8IUE1 241 aa7.58□□□□□ -1.2
TRIM28-208ENST00000597172 OR51H1Q8NH63 302 aa7.58□□□□□ -1.2
TRIM28-208ENST00000597172 GLYATL2Q8WU03 294 aa7.58□□□□□ -1.2
TRIM28-208ENST00000597172 MALSU1Q96EH3 234 aa7.58□□□□□ -1.2
TRIM28-208ENST00000597172 GALNT14Q96FL9 552 aa7.58□□□□□ -1.2
TRIM28-208ENST00000597172 TP53RKQ96S44 253 aa7.58□□□□□ -1.2
TRIM28-208ENST00000597172 HSD17B10Q99714 261 aaKnown RBP7.58□□□□□ -1.2
TRIM28-208ENST00000597172 PRR13Q9NZ81 148 aa7.58□□□□□ -1.2
TRIM28-208ENST00000597172 AMMECR1Q9Y4X0 333 aaPredicted RBP7.58□□□□□ -1.2
TRIM28-208ENST00000597172 HILPDAQ9Y5L2 63 aa7.58□□□□□ -1.2
TRIM28-208ENST00000597172 A0A0U1RQK1 487 aa7.57□□□□□ -1.2
TRIM28-208ENST00000597172 C3orf85A0A1B0GTC6 90 aa7.57□□□□□ -1.2
TRIM28-208ENST00000597172 A0A1B0GVG6 124 aa7.57□□□□□ -1.2
TRIM28-208ENST00000597172 A0A1W2PPI3 338 aa7.57□□□□□ -1.2
TRIM28-208ENST00000597172 H0YJW9 148 aa7.57□□□□□ -1.2
TRIM28-208ENST00000597172 RAMP3O60896 148 aa7.57□□□□□ -1.2
TRIM28-208ENST00000597172 OR5AC1P0C628 307 aa7.57□□□□□ -1.2
TRIM28-208ENST00000597172 THBS3P49746 956 aa7.57□□□□□ -1.2
TRIM28-208ENST00000597172 TMEM187Q14656 261 aa7.57□□□□□ -1.2
TRIM28-208ENST00000597172 SLC9A3R2Q15599 337 aa7.57□□□□□ -1.2
TRIM28-208ENST00000597172 SSX2Q16385 188 aa7.57□□□□□ -1.2
TRIM28-208ENST00000597172 TATDN3Q17R31 274 aa7.57□□□□□ -1.2
TRIM28-208ENST00000597172 ANKRD55Q3KP44 614 aa7.57□□□□□ -1.2
TRIM28-208ENST00000597172 LYG2Q86SG7 212 aa7.57□□□□□ -1.2
TRIM28-208ENST00000597172 SGPP2Q8IWX5 399 aa7.57□□□□□ -1.2
TRIM28-208ENST00000597172 BCL6BQ8N143 479 aaPredicted RBP7.57□□□□□ -1.2
TRIM28-208ENST00000597172 CCDC71LQ8N9Z2 235 aa7.57□□□□□ -1.2
TRIM28-208ENST00000597172 OR5AN1Q8NGI8 311 aa7.57□□□□□ -1.2
TRIM28-208ENST00000597172 NANPQ8TBE9 248 aa7.57□□□□□ -1.2
TRIM28-208ENST00000597172 TCTEX1D2Q8WW35 142 aa7.57□□□□□ -1.2
TRIM28-208ENST00000597172 RPEQ96AT9 228 aa7.57□□□□□ -1.2
TRIM28-208ENST00000597172 MEGF9Q9H1U4 602 aa7.57□□□□□ -1.2
TRIM28-208ENST00000597172 NUP50Q9UKX7 468 aa7.57□□□□□ -1.2
TRIM28-208ENST00000597172 ALG5Q9Y673 324 aa7.57□□□□□ -1.2
TRIM28-208ENST00000597172 IGHV3-72A0A0B4J1Y9 119 aa7.56□□□□□ -1.2
TRIM28-208ENST00000597172 C7orf66A4D0T2 115 aa7.56□□□□□ -1.2
TRIM28-208ENST00000597172 FAM90A9PA6NNJ1 464 aa7.56□□□□□ -1.2
TRIM28-208ENST00000597172 OOSP1A8MZH6 123 aa7.56□□□□□ -1.2
TRIM28-208ENST00000597172 H0Y980 276 aa7.56□□□□□ -1.2
TRIM28-208ENST00000597172 PRAF2O60831 178 aa7.56□□□□□ -1.2
TRIM28-208ENST00000597172 IGKV1-39P01597 117 aa7.56□□□□□ -1.2
TRIM28-208ENST00000597172 IGKV1D-39P04432 117 aa7.56□□□□□ -1.2
TRIM28-208ENST00000597172 VAMP1P23763 118 aa7.56□□□□□ -1.2
TRIM28-208ENST00000597172 UCP1P25874 307 aa7.56□□□□□ -1.2
TRIM28-208ENST00000597172 S100GP29377 79 aa7.56□□□□□ -1.2
TRIM28-208ENST00000597172 CEACAM3P40198 252 aa7.56□□□□□ -1.2
TRIM28-208ENST00000597172 BPIFB3P59826 476 aa7.56□□□□□ -1.2
TRIM28-208ENST00000597172 SRSF4Q08170 494 aaKnown RBP7.56□□□□□ -1.2
TRIM28-208ENST00000597172 HABP2Q14520 560 aaPredicted RBP7.56□□□□□ -1.2
TRIM28-208ENST00000597172 C4orf46Q504U0 113 aa7.56□□□□□ -1.2
TRIM28-208ENST00000597172 OR2B11Q5JQS5 317 aa7.56□□□□□ -1.2
TRIM28-208ENST00000597172 REC114Q7Z4M0 266 aa7.56□□□□□ -1.2
TRIM28-208ENST00000597172 MOB3BQ86TA1 216 aa7.56□□□□□ -1.2
TRIM28-208ENST00000597172 SPAG16Q8N0X2 631 aa7.56□□□□□ -1.2
TRIM28-208ENST00000597172 LHFPL5Q8TAF8 219 aa7.56□□□□□ -1.2
TRIM28-208ENST00000597172 MRAPQ8TCY5 172 aa7.56□□□□□ -1.2
TRIM28-208ENST00000597172 ZNF431Q8TF32 576 aaPredicted RBP7.56□□□□□ -1.2
TRIM28-208ENST00000597172 CFHR4Q92496 578 aa7.56□□□□□ -1.2
TRIM28-208ENST00000597172 ADTRPQ96IZ2 230 aa7.56□□□□□ -1.2
TRIM28-208ENST00000597172 RITA1Q96K30 269 aa7.56□□□□□ -1.2
TRIM28-208ENST00000597172 TMEM56Q96MV1 263 aa7.56□□□□□ -1.2
TRIM28-208ENST00000597172 TMEM222Q9H0R3 208 aa7.56□□□□□ -1.2
TRIM28-208ENST00000597172 KCNIP3Q9Y2W7 256 aa7.56□□□□□ -1.2
TRIM28-208ENST00000597172 TMEM56-RWDD3S4R434 201 aa7.56□□□□□ -1.2
TRIM28-208ENST00000597172 SNRPGP15A8MWD9 76 aa7.55□□□□□ -1.2
TRIM28-208ENST00000597172 TIMM23O14925 209 aa7.55□□□□□ -1.2
TRIM28-208ENST00000597172 TXNL1O43396 289 aa7.55□□□□□ -1.2
TRIM28-208ENST00000597172 FCGR3BO75015 233 aa7.55□□□□□ -1.2
TRIM28-208ENST00000597172 DUS4LO95620 317 aaKnown RBP7.55□□□□□ -1.2
TRIM28-208ENST00000597172 CDS2O95674 445 aa7.55□□□□□ -1.2
TRIM28-208ENST00000597172 HLA-AP01891 365 aaKnown RBP7.55□□□□□ -1.2
TRIM28-208ENST00000597172 IGKV1-16P04430 117 aa7.55□□□□□ -1.2
TRIM28-208ENST00000597172 CD24P25063 80 aa7.55□□□□□ -1.2
TRIM28-208ENST00000597172 LPAR6P43657 344 aa7.55□□□□□ -1.2
TRIM28-208ENST00000597172 RAB13P51153 203 aa7.55□□□□□ -1.2
TRIM28-208ENST00000597172 CATR1Q13166 79 aa7.55□□□□□ -1.2
TRIM28-208ENST00000597172 C2orf68Q2NKX9 166 aa7.55□□□□□ -1.2
TRIM28-208ENST00000597172 TUSC1Q2TAM9 212 aa7.55□□□□□ -1.2
TRIM28-208ENST00000597172 BEAN1Q3B7T3 259 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms