RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 ZNF491Q8N8L2 437 aa11.76□□□□□ -0.53
TRIM28-205ENST00000595028 OR13F1Q8NGS4 319 aa11.76□□□□□ -0.53
TRIM28-205ENST00000595028 MRAPQ8TCY5 172 aa11.76□□□□□ -0.53
TRIM28-205ENST00000595028 ARPC1AQ92747 370 aa11.76□□□□□ -0.53
TRIM28-205ENST00000595028 SLC25A46Q96AG3 418 aa11.76□□□□□ -0.53
TRIM28-205ENST00000595028 UBE2E2Q96LR5 201 aa11.76□□□□□ -0.53
TRIM28-205ENST00000595028 FAM103A1Q9BTL3 118 aaKnown RBP11.76□□□□□ -0.53
TRIM28-205ENST00000595028 MCRIP2Q9BUT9 160 aaKnown RBP11.76□□□□□ -0.53
TRIM28-205ENST00000595028 GNB4Q9HAV0 340 aa11.76□□□□□ -0.53
TRIM28-205ENST00000595028 NUBP2Q9Y5Y2 271 aa11.76□□□□□ -0.53
TRIM28-205ENST00000595028 SHOXO15266 292 aa11.75□□□□□ -0.53
TRIM28-205ENST00000595028 SLC22A5O76082 557 aa11.75□□□□□ -0.53
TRIM28-205ENST00000595028 CRYGBP07316 175 aa11.75□□□□□ -0.53
TRIM28-205ENST00000595028 PTHLHP12272 177 aa11.75□□□□□ -0.53
TRIM28-205ENST00000595028 RAB9AP51151 201 aa11.75□□□□□ -0.53
TRIM28-205ENST00000595028 ARPC4P59998 168 aa11.75□□□□□ -0.53
TRIM28-205ENST00000595028 SSBP2P81877 361 aaPredicted RBP11.75□□□□□ -0.53
TRIM28-205ENST00000595028 TMEM267Q0VDI3 215 aaPredicted RBP11.75□□□□□ -0.53
TRIM28-205ENST00000595028 KCTD9Q7L273 389 aa11.75□□□□□ -0.53
TRIM28-205ENST00000595028 HOGA1Q86XE5 327 aa11.75□□□□□ -0.53
TRIM28-205ENST00000595028 SAMD12Q8N8I0 201 aa11.75□□□□□ -0.53
TRIM28-205ENST00000595028 GRPEL2Q8TAA5 225 aa11.75□□□□□ -0.53
TRIM28-205ENST00000595028 KCTD12Q96CX2 325 aaKnown RBP11.75□□□□□ -0.53
TRIM28-205ENST00000595028 VSIG4Q9Y279 399 aa11.75□□□□□ -0.53
TRIM28-205ENST00000595028 RBMX2Q9Y388 322 aaKnown RBP11.75□□□□□ -0.53
TRIM28-205ENST00000595028 SRRM4A7MD48 611 aaKnown RBP11.74□□□□□ -0.53
TRIM28-205ENST00000595028 ARPC1BO15143 372 aaKnown RBP11.74□□□□□ -0.53
TRIM28-205ENST00000595028 XRCC3O43542 346 aa11.74□□□□□ -0.53
TRIM28-205ENST00000595028 CRYZL1O95825 349 aa11.74□□□□□ -0.53
TRIM28-205ENST00000595028 IGLV2-14P01704 120 aa11.74□□□□□ -0.53
TRIM28-205ENST00000595028 CBX5P45973 191 aa11.74□□□□□ -0.53
TRIM28-205ENST00000595028 RAB25P57735 213 aa11.74□□□□□ -0.53
TRIM28-205ENST00000595028 VBP1P61758 197 aa11.74□□□□□ -0.53
TRIM28-205ENST00000595028 RUNX1Q01196 453 aa11.74□□□□□ -0.53
TRIM28-205ENST00000595028 EGFEM1PQ0D2K5 195 aa11.74□□□□□ -0.53
TRIM28-205ENST00000595028 FXYD3Q14802 87 aa11.74□□□□□ -0.53
TRIM28-205ENST00000595028 AKIRIN2Q53H80 203 aa11.74□□□□□ -0.53
TRIM28-205ENST00000595028 ACTBL2Q562R1 376 aa11.74□□□□□ -0.53
TRIM28-205ENST00000595028 PYHIN1Q6K0P9 492 aa11.74□□□□□ -0.53
TRIM28-205ENST00000595028 UNQ5815/PRO19632Q6UWF5 114 aa11.74□□□□□ -0.53
TRIM28-205ENST00000595028 OVCH2Q7RTZ1 564 aa11.74□□□□□ -0.53
TRIM28-205ENST00000595028 LFNGQ8NES3 379 aa11.74□□□□□ -0.53
TRIM28-205ENST00000595028 OR5M8Q8NGP6 311 aa11.74□□□□□ -0.53
TRIM28-205ENST00000595028 DPF1Q92782 380 aa11.74□□□□□ -0.53
TRIM28-205ENST00000595028 SNAPC3Q92966 411 aa11.74□□□□□ -0.53
TRIM28-205ENST00000595028 S100A16Q96FQ6 103 aaKnown RBP11.74□□□□□ -0.53
TRIM28-205ENST00000595028 DNAH9Q9NYC9 4486 aa11.74□□□□□ -0.53
TRIM28-205ENST00000595028 I3L521 148 aa11.73□□□□□ -0.53
TRIM28-205ENST00000595028 HOXD3P31249 432 aaPredicted RBP11.73□□□□□ -0.53
TRIM28-205ENST00000595028 TAS2R20P59543 309 aa11.73□□□□□ -0.53
TRIM28-205ENST00000595028 UBE2KP61086 200 aa11.73□□□□□ -0.53
TRIM28-205ENST00000595028 GNB1P62873 340 aa11.73□□□□□ -0.53
TRIM28-205ENST00000595028 PJVKQ0ZLH3 352 aa11.73□□□□□ -0.53
TRIM28-205ENST00000595028 VMA21Q3ZAQ7 101 aa11.73□□□□□ -0.53
TRIM28-205ENST00000595028 TMEM69Q5SWH9 247 aa11.73□□□□□ -0.53
TRIM28-205ENST00000595028 OR11H1Q8NG94 326 aa11.73□□□□□ -0.53
TRIM28-205ENST00000595028 OSR1Q8TAX0 266 aaPredicted RBP11.73□□□□□ -0.53
TRIM28-205ENST00000595028 CASTOR1Q8WTX7 329 aa11.73□□□□□ -0.53
TRIM28-205ENST00000595028 MRPS7Q9Y2R9 242 aaKnown RBP11.73□□□□□ -0.53
TRIM28-205ENST00000595028 RYR2Q92736 4967 aa11.73□□□□□ -0.53
TRIM28-205ENST00000595028 MEIS3P1A6NDR6 274 aa11.72□□□□□ -0.53
TRIM28-205ENST00000595028 GABARAPO95166 117 aa11.72□□□□□ -0.53
TRIM28-205ENST00000595028 CNIH1O95406 144 aa11.72□□□□□ -0.53
TRIM28-205ENST00000595028 FCER2P06734 321 aa11.72□□□□□ -0.53
TRIM28-205ENST00000595028 AADACP22760 399 aa11.72□□□□□ -0.53
TRIM28-205ENST00000595028 FCGR2CP31995 323 aa11.72□□□□□ -0.53
TRIM28-205ENST00000595028 KRTAP10-11P60412 298 aa11.72□□□□□ -0.53
TRIM28-205ENST00000595028 RPL30P62888 115 aaKnown RBP11.72□□□□□ -0.53
TRIM28-205ENST00000595028 EIF4EBP1Q13541 118 aaPredicted RBP11.72□□□□□ -0.53
TRIM28-205ENST00000595028 ASPHD1Q5U4P2 390 aa11.72□□□□□ -0.53
TRIM28-205ENST00000595028 OR5B12Q96R08 314 aa11.72□□□□□ -0.53
TRIM28-205ENST00000595028 HSD17B10Q99714 261 aaKnown RBP11.72□□□□□ -0.53
TRIM28-205ENST00000595028 IFT46Q9NQC8 304 aa11.72□□□□□ -0.53
TRIM28-205ENST00000595028 ANAPC10Q9UM13 185 aa11.72□□□□□ -0.53
TRIM28-205ENST00000595028 PRELID3BQ9Y3B1 194 aa11.72□□□□□ -0.53
TRIM28-205ENST00000595028 FCGR3BO75015 233 aa11.71□□□□□ -0.53
TRIM28-205ENST00000595028 PPYP01298 95 aa11.71□□□□□ -0.53
TRIM28-205ENST00000595028 EIF4EP06730 217 aaKnown RBP11.71□□□□□ -0.53
TRIM28-205ENST00000595028 LGALS1P09382 135 aaKnown RBP11.71□□□□□ -0.53
TRIM28-205ENST00000595028 OR8U8P0C7N1 319 aa11.71□□□□□ -0.53
TRIM28-205ENST00000595028 ZNF616Q08AN1 781 aa11.71□□□□□ -0.53
TRIM28-205ENST00000595028 MSMO1Q15800 293 aa11.71□□□□□ -0.53
TRIM28-205ENST00000595028 MRGPRG-AS1Q2M3A8 158 aa11.71□□□□□ -0.53
TRIM28-205ENST00000595028 OR2B11Q5JQS5 317 aa11.71□□□□□ -0.53
TRIM28-205ENST00000595028 TEX45Q8NA69 505 aa11.71□□□□□ -0.53
TRIM28-205ENST00000595028 POC5Q8NA72 575 aa11.71□□□□□ -0.53
TRIM28-205ENST00000595028 OR1N2Q8NGR9 330 aa11.71□□□□□ -0.53
TRIM28-205ENST00000595028 SECTM1Q8WVN6 248 aa11.71□□□□□ -0.53
TRIM28-205ENST00000595028 TCTEX1D2Q8WW35 142 aa11.71□□□□□ -0.53
TRIM28-205ENST00000595028 NAA50Q9GZZ1 169 aaKnown RBP11.71□□□□□ -0.53
TRIM28-205ENST00000595028 SLA2Q9H6Q3 261 aa11.71□□□□□ -0.53
TRIM28-205ENST00000595028 TAS2R8Q9NYW2 309 aa11.71□□□□□ -0.53
TRIM28-205ENST00000595028 SAA1P0DJI8 122 aaPredicted RBP11.7□□□□□ -0.54
TRIM28-205ENST00000595028 CD40LGP29965 261 aa11.7□□□□□ -0.54
TRIM28-205ENST00000595028 TPPP2P59282 170 aa11.7□□□□□ -0.54
TRIM28-205ENST00000595028 CDK10Q15131 360 aa11.7□□□□□ -0.54
TRIM28-205ENST00000595028 CTF1Q16619 201 aa11.7□□□□□ -0.54
TRIM28-205ENST00000595028 PRSS8Q16651 343 aa11.7□□□□□ -0.54
TRIM28-205ENST00000595028 ZNF66Q6ZN08 573 aa11.7□□□□□ -0.54
TRIM28-205ENST00000595028 IDO2Q6ZQW0 420 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms