RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	NPCDR1	Q9BY65	106 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	MRPL32	Q9BYC8	188 aa	Known RBP	3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	MRPL18	Q9H0U6	180 aa	Known RBP	3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	ZNF576	Q9H609	170 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	ZNF319	Q9P2F9	582 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	PXMP4	Q9Y6I8	212 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	FREM3	P0C091	2139 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	IGKV1D-8	A0A087WSZ0	117 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	C21orf140	B9A014	251 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790		C9JQL5	133 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	SMPD2	O60906	423 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	FCGR3B	O75015	233 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	NDUFB4	O95168	129 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	IGHV3-9	P01782	118 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	APCS	P02743	223 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	AMBP	P02760	352 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	AMY1A	P04745	511 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	SOD3	P08294	240 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	NPY1R	P25929	384 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	CD82	P27701	267 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	GRN	P28799	593 aa	Known RBP	3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	PLGLA	Q15195	96 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	VAMP3	Q15836	100 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	COA6	Q5JTJ3	125 aa	Known RBP	3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	ACTL10	Q5JWF8	245 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	FAM90A2P	Q658T7	463 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	BHLHA15	Q7RTS1	189 aa	Predicted RBP	3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	GBGT1	Q8N5D6	347 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	GCSAM	Q8N6F7	178 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	ZNF436-AS1	Q8NC38	126 aa	Predicted RBP	3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	OR51G1	Q8NGK1	321 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	SSC4D	Q8WTU2	575 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	PMCHL2	Q9BQD1	86 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	HSPB9	Q9BQS6	159 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	GSX1	Q9H4S2	264 aa	Predicted RBP	3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	ZNF703	Q9H7S9	590 aa	Predicted RBP	3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	HSPB7	Q9UBY9	170 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	PSG11	Q9UQ72	335 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	MSRB2	Q9Y3D2	182 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	SOX21	Q9Y651	276 aa	Predicted RBP	3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	RANBP2	P49792	3224 aa	Known RBP	3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	SPTBN1	Q01082	2364 aa	Known RBP	3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	CHD8	Q9HCK8	2581 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	SHISA7	A6NL88	538 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	RBFOX2	O43251	390 aa	Known RBP eCLIP	3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	OR2H2	O95918	312 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	COX6A1	P12074	109 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	USF1	P22415	310 aa	Predicted RBP	3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	G6PC	P35575	357 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	SELENOT	P62341	195 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	CCL20	P78556	96 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	OR5I1	Q13606	314 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	EDDM3A	Q14507	147 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	CLEC12B	Q2HXU8	276 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	OR10J3	Q5JRS4	329 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	FBXW9	Q5XUX1	488 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	WDR25	Q64LD2	544 aa	Predicted RBP	3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	ZNF324B	Q6AW86	544 aa	Predicted RBP	3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	SLC23A3	Q6PIS1	610 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	CLEC2A	Q6UVW9	174 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	C12orf54	Q6X4T0	127 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	BATF2	Q8N1L9	274 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	OR52E5	Q8NH55	327 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	CLEC1B	Q9P126	229 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	HSPB8	Q9UJY1	196 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	JPT1	Q9UK76	154 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	SPTB	P11277	2137 aa		3.01	□□□□□ -1.93
VMP1-216	ENST00000592790	MUC22	E2RYF6	1773 aa	Predicted RBP	3	□□□□□ -1.93
VMP1-216	ENST00000592790		A8MWP6	167 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	FAM157A	C9JC47	383 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	SYNGR1	O43759	233 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	TNFSF13	O75888	250 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	HBZ	P02008	142 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	PATE4	P0C8F1	98 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	IER3	P46695	156 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	TMEM249	Q2WGJ8	235 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	C9orf50	Q5SZB4	431 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	MRPL14	Q6P1L8	145 aa	Known RBP	3	□□□□□ -1.93
VMP1-216	ENST00000592790	RASL11A	Q6T310	242 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	TMEM14EP	Q6UXP3	125 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	SSX8	Q7RTT4	187 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	SPRED2	Q7Z698	418 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	FAM90A1	Q86YD7	464 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	DRAM1	Q8N682	238 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	VN1R17P	Q8TDU5	208 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	GNB1L	Q9BYB4	327 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	TMEM106B	Q9NUM4	274 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	SLC25A10	Q9UBX3	287 aa	Predicted RBP	3	□□□□□ -1.93
VMP1-216	ENST00000592790	CLN8	Q9UBY8	286 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	IL17B	Q9UHF5	180 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	POLR3K	Q9Y2Y1	108 aa	Predicted RBP	3	□□□□□ -1.93
VMP1-216	ENST00000592790	LOXL2	Q9Y4K0	774 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	ARID1B	Q8NFD5	2236 aa	Predicted RBP	3	□□□□□ -1.93
VMP1-216	ENST00000592790	ASPM	Q8IZT6	3477 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	IGKV3D-15	A0A087WSY6	115 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	TRGV5	A0A0B4J1U4	118 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	MARCH11	A6NNE9	402 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790	AHRR	A9YTQ3	701 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790		C9JCJ5	164 aa		3	□□□□□ -1.93
VMP1-216	ENST00000592790		K7ERU9	68 aa		3	□□□□□ -1.93

Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms