RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 MPZL1O95297 269 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 NUDT14O95848 222 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 IGHG1P01857 330 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 IGKV3-11P04433 115 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 THBDP07204 575 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 CST2P09228 141 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 WNT2P09544 360 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 PGA3P0DJD8 388 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 SLC25A6P12236 298 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 ZNF25P17030 456 aaPredicted RBP3.48□□□□□ -1.85
LIG3-211ENST00000588713 BLVRBP30043 206 aaPredicted RBP3.48□□□□□ -1.85
LIG3-211ENST00000588713 OR10J1P30954 320 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 GALR1P47211 349 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 OR3A1P47881 315 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 IDH3GP51553 393 aaPredicted RBP3.48□□□□□ -1.85
LIG3-211ENST00000588713 CEBPGP53567 150 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 RAB11AP62491 216 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 PAX5Q02548 391 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 COTL1Q14019 142 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 RNPS1Q15287 305 aaKnown RBP3.48□□□□□ -1.85
LIG3-211ENST00000588713 CNN3Q15417 329 aaKnown RBP3.48□□□□□ -1.85
LIG3-211ENST00000588713 KISS1Q15726 138 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 SRSF7Q16629 238 aaKnown RBP eCLIP3.48□□□□□ -1.85
LIG3-211ENST00000588713 TMEM183BQ1AE95 376 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 MPV17LQ2QL34 196 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 DEFB121Q5J5C9 76 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 KCNIP4Q6PIL6 250 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 CRIP3Q6Q6R5 217 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 Q6ZS49 121 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 LYZL2Q7Z4W2 148 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 C5orf24Q7Z6I8 188 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 CENPVQ7Z7K6 275 aaPredicted RBP3.48□□□□□ -1.85
LIG3-211ENST00000588713 COMMD2Q86X83 199 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 ZNF100Q8IYN0 542 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 GBGT1Q8N5D6 347 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 TMEM252Q8N6L7 170 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 CNEP1R1Q8N9A8 125 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 LINC01356Q8N9X3 169 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 OR52M1Q8NGK5 317 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 OR5L1Q8NGL2 311 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 OR5C1Q8NGR4 320 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 OR2AJ1Q8NGZ0 328 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 GPR119Q8TDV5 335 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 PTPMT1Q8WUK0 201 aaPredicted RBP3.48□□□□□ -1.85
LIG3-211ENST00000588713 MBD3L1Q8WWY6 194 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 C22orf15Q8WYQ4 148 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 DDB2Q92466 427 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 TOMM40LQ969M1 308 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 ADIPOR1Q96A54 375 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 PINX1Q96BK5 328 aaKnown RBP3.48□□□□□ -1.85
LIG3-211ENST00000588713 ZNF524Q96C55 264 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 FAM71F1Q96KD3 344 aaPredicted RBP3.48□□□□□ -1.85
LIG3-211ENST00000588713 JSRP1Q96MG2 331 aaPredicted RBP3.48□□□□□ -1.85
LIG3-211ENST00000588713 TMEM56Q96MV1 263 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 FAM173AQ9BQD7 235 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 TMEM204Q9BSN7 226 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 ST6GALNAC5Q9BVH7 336 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 DEFB126Q9BYW3 111 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 TMEM222Q9H0R3 208 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 OPN3Q9H1Y3 402 aaPredicted RBP3.48□□□□□ -1.85
LIG3-211ENST00000588713 OR51I2Q9H344 312 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 PNRC2Q9NPJ4 139 aaKnown RBP3.48□□□□□ -1.85
LIG3-211ENST00000588713 MANBALQ9NQG1 85 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 GPR173Q9NS66 373 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 CENPMQ9NSP4 180 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 CBLN4Q9NTU7 201 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 IL36GQ9NZH8 169 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 SLC7A11Q9UPY5 501 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 RNF115Q9Y4L5 304 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 TIMM9Q9Y5J7 89 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 LHFPL6Q9Y693 200 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 TMEM56-RWDD3S4R434 201 aa3.48□□□□□ -1.85
LIG3-211ENST00000588713 FREM3P0C091 2139 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 TRAV9-1A0A075B6T8 112 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 IGKV1D-8A0A087WSZ0 117 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 TNFSF12-TNFSF13A0A0A6YY99 330 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 IGKV1D-43A0A0B4J1Z2 117 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 FAM24AA6NFZ4 105 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 ZNF705GA8MUZ8 300 aaPredicted RBP3.47□□□□□ -1.85
LIG3-211ENST00000588713 H0Y980 276 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 MMP23AO75900 390 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 IFNA5P01569 189 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 PFN1P07737 140 aaKnown RBP3.47□□□□□ -1.85
LIG3-211ENST00000588713 CD3EP07766 207 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 IL6RP08887 468 aaPredicted RBP3.47□□□□□ -1.85
LIG3-211ENST00000588713 DBHP09172 617 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 ZNF17P17021 662 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 G0S2P27469 103 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 APLNRP35414 380 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 NPBWR2P48146 333 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 SSR4P51571 173 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 DYNLT3P51808 116 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 CNN1P51911 297 aaKnown RBP3.47□□□□□ -1.85
LIG3-211ENST00000588713 CLRN1P58418 232 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 PPP1CBP62140 327 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 HIST1H3AP68431 136 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 CCL20P78556 96 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 MRPS11P82912 194 aaKnown RBP3.47□□□□□ -1.85
LIG3-211ENST00000588713 SERF2P84101 59 aa3.47□□□□□ -1.85
LIG3-211ENST00000588713 HERPUD1Q15011 391 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms