RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 C11orf1Q9H5F2 150 aa8.58□□□□□ -1.04
SS18-217ENST00000580958 ZC4H2Q9NQZ6 224 aa8.58□□□□□ -1.04
SS18-217ENST00000580958 PAIP2BQ9ULR5 123 aaKnown RBP8.58□□□□□ -1.04
SS18-217ENST00000580958 KIAA1324LA8MWY0 1029 aaPredicted RBP8.57□□□□□ -1.04
SS18-217ENST00000580958 WRBO00258 174 aa8.57□□□□□ -1.04
SS18-217ENST00000580958 TOR1AO14656 332 aa8.57□□□□□ -1.04
SS18-217ENST00000580958 CT45A6P0DMU7 189 aa8.57□□□□□ -1.04
SS18-217ENST00000580958 CT45A5P0DMU8 189 aa8.57□□□□□ -1.04
SS18-217ENST00000580958 CT45A7P0DMV0 189 aa8.57□□□□□ -1.04
SS18-217ENST00000580958 PLA2G2AP14555 144 aa8.57□□□□□ -1.04
SS18-217ENST00000580958 COX7A1P24310 79 aa8.57□□□□□ -1.04
SS18-217ENST00000580958 COL8A1P27658 744 aa8.57□□□□□ -1.04
SS18-217ENST00000580958 RPL12P30050 165 aaKnown RBP8.57□□□□□ -1.04
SS18-217ENST00000580958 ATP5J2P56134 94 aa8.57□□□□□ -1.04
SS18-217ENST00000580958 VAMP2P63027 116 aa8.57□□□□□ -1.04
SS18-217ENST00000580958 MIDNQ504T8 468 aa8.57□□□□□ -1.04
SS18-217ENST00000580958 TEX261Q6UWH6 196 aa8.57□□□□□ -1.04
SS18-217ENST00000580958 SLC51BQ86UW2 128 aa8.57□□□□□ -1.04
SS18-217ENST00000580958 ZNF680Q8NEM1 530 aa8.57□□□□□ -1.04
SS18-217ENST00000580958 OR4S2Q8NH73 311 aa8.57□□□□□ -1.04
SS18-217ENST00000580958 CLDND2Q8NHS1 167 aa8.57□□□□□ -1.04
SS18-217ENST00000580958 ARPC5LQ9BPX5 153 aa8.57□□□□□ -1.04
SS18-217ENST00000580958 CLEC7AQ9BXN2 247 aa8.57□□□□□ -1.04
SS18-217ENST00000580958 PLEKHA2Q9HB19 425 aa8.57□□□□□ -1.04
SS18-217ENST00000580958 U3KQ87 197 aa8.57□□□□□ -1.04
SS18-217ENST00000580958 TNCP24821 2201 aa8.57□□□□□ -1.04
SS18-217ENST00000580958 ANKRD17O75179 2603 aaKnown RBP8.56□□□□□ -1.04
SS18-217ENST00000580958 IGHV2-26A0A0B4J1V2 119 aa8.56□□□□□ -1.04
SS18-217ENST00000580958 hCG_1809904A0A1W2PP81 198 aa8.56□□□□□ -1.04
SS18-217ENST00000580958 A0A1W2PPE2 198 aa8.56□□□□□ -1.04
SS18-217ENST00000580958 A0A1W2PR64 198 aa8.56□□□□□ -1.04
SS18-217ENST00000580958 A0A1W2PRV1 198 aa8.56□□□□□ -1.04
SS18-217ENST00000580958 CHST1O43916 411 aa8.56□□□□□ -1.04
SS18-217ENST00000580958 GPR137BO60478 399 aa8.56□□□□□ -1.04
SS18-217ENST00000580958 CRYZL1O95825 349 aa8.56□□□□□ -1.04
SS18-217ENST00000580958 OR9G9P0C7N8 305 aa8.56□□□□□ -1.04
SS18-217ENST00000580958 PVALBP20472 110 aaPredicted RBP8.56□□□□□ -1.04
SS18-217ENST00000580958 ZFP36P26651 326 aaKnown RBP8.56□□□□□ -1.04
SS18-217ENST00000580958 IL3RAP26951 378 aa8.56□□□□□ -1.04
SS18-217ENST00000580958 P2RY1P47900 373 aa8.56□□□□□ -1.04
SS18-217ENST00000580958 REG1BP48304 166 aa8.56□□□□□ -1.04
SS18-217ENST00000580958 LMO4P61968 165 aa8.56□□□□□ -1.04
SS18-217ENST00000580958 ARF6P62330 175 aa8.56□□□□□ -1.04
SS18-217ENST00000580958 UBA52P62987 128 aaKnown RBP8.56□□□□□ -1.04
SS18-217ENST00000580958 EXOSC2Q13868 293 aaKnown RBP8.56□□□□□ -1.04
SS18-217ENST00000580958 DIAPH2-AS1Q14236 149 aa8.56□□□□□ -1.04
SS18-217ENST00000580958 FAM71F2Q6NXP2 309 aa8.56□□□□□ -1.04
SS18-217ENST00000580958 SSX9Q7RTT3 188 aa8.56□□□□□ -1.04
SS18-217ENST00000580958 H2BFWTQ7Z2G1 175 aa8.56□□□□□ -1.04
SS18-217ENST00000580958 PNKDQ8N490 385 aa8.56□□□□□ -1.04
SS18-217ENST00000580958 Q8N7P7 452 aa8.56□□□□□ -1.04
SS18-217ENST00000580958 RBMXL1Q96E39 390 aaKnown RBP8.56□□□□□ -1.04
SS18-217ENST00000580958 BSCL2Q96G97 398 aaPredicted RBP8.56□□□□□ -1.04
SS18-217ENST00000580958 PIMREGQ9BSJ6 248 aa8.56□□□□□ -1.04
SS18-217ENST00000580958 ZNF471Q9BX82 626 aaPredicted RBP8.56□□□□□ -1.04
SS18-217ENST00000580958 SLC35D1Q9NTN3 355 aa8.56□□□□□ -1.04
SS18-217ENST00000580958 COA4Q9NYJ1 87 aa8.56□□□□□ -1.04
SS18-217ENST00000580958 COL12A1Q99715 3063 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 USP9YO00507 2555 aaPredicted RBP8.55□□□□□ -1.04
SS18-217ENST00000580958 IGSF23A1L1A6 192 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 FAM24AA6NFZ4 105 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 MARCH11A6NNE9 402 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 J3QKU1 62 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 M0R1W7 72 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 ENSAO43768 121 aaKnown RBP8.55□□□□□ -1.04
SS18-217ENST00000580958 SPDEFO95238 335 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 IFNA7P01567 189 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 APOA2P02652 100 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 IAPPP10997 89 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 MMP9P14780 707 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 NQO2P16083 231 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 ZNF137PP52743 207 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 PRRX1P54821 245 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 ERVK-16P61578 105 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 LCN2P80188 198 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 RTL8BQ17RB0 113 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 CLEC9AQ6UXN8 241 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 C10orf105Q8TEF2 133 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 ST8SIA2Q92186 375 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 FAM168AQ92567 244 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 TNFRSF14Q92956 283 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 ST6GALNAC6Q969X2 333 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 TMEM186Q96B77 213 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 PERPQ96FX8 193 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 NABP2Q9BQ15 211 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 SMIM3Q9BZL3 60 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 BARX1Q9HBU1 254 aaPredicted RBP8.55□□□□□ -1.04
SS18-217ENST00000580958 SIRT7Q9NRC8 400 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 CYTL1Q9NRR1 136 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.55□□□□□ -1.04
SS18-217ENST00000580958 FBXL17Q9UF56 701 aa8.55□□□□□ -1.04
SS18-217ENST00000580958 A8MXK9 166 aa8.54□□□□□ -1.04
SS18-217ENST00000580958 FAM90A26D6RGX4 464 aa8.54□□□□□ -1.04
SS18-217ENST00000580958 H0YJW9 148 aa8.54□□□□□ -1.04
SS18-217ENST00000580958 SYNGR2O43760 224 aa8.54□□□□□ -1.04
SS18-217ENST00000580958 TMEM50AO95807 157 aa8.54□□□□□ -1.04
SS18-217ENST00000580958 IGLV1-47P01700 117 aa8.54□□□□□ -1.04
SS18-217ENST00000580958 HTR2BP41595 481 aa8.54□□□□□ -1.04
SS18-217ENST00000580958 PAX9P55771 341 aa8.54□□□□□ -1.04
SS18-217ENST00000580958 OR2B8PP59922 312 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms