RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 A0A087WUU8 490 aa1.17□□□□□ -2.22
SS18-214ENST00000580003 PSMB8P28062 276 aa1.17□□□□□ -2.22
SS18-214ENST00000580003 FXYD7P58549 80 aa1.17□□□□□ -2.22
SS18-214ENST00000580003 TBPL1P62380 186 aa1.17□□□□□ -2.22
SS18-214ENST00000580003 MIAQ16674 131 aa1.17□□□□□ -2.22
SS18-214ENST00000580003 PACRGLQ8N7B6 248 aa1.17□□□□□ -2.22
SS18-214ENST00000580003 ZNF675Q8TD23 568 aa1.17□□□□□ -2.22
SS18-214ENST00000580003 C12orf43Q96C57 262 aaKnown RBP1.17□□□□□ -2.22
SS18-214ENST00000580003 TTTY13Q9BZ97 58 aa1.17□□□□□ -2.22
SS18-214ENST00000580003 NOTCH1P46531 2555 aa1.17□□□□□ -2.22
SS18-214ENST00000580003 METTL15A6NJ78 407 aa1.16□□□□□ -2.22
SS18-214ENST00000580003 LINC00614P0C842 121 aa1.16□□□□□ -2.22
SS18-214ENST00000580003 CA5AP35218 305 aa1.16□□□□□ -2.22
SS18-214ENST00000580003 TAS2R20P59543 309 aa1.16□□□□□ -2.22
SS18-214ENST00000580003 TPI1P60174 286 aa1.16□□□□□ -2.22
SS18-214ENST00000580003 AP1S1P61966 158 aa1.16□□□□□ -2.22
SS18-214ENST00000580003 CTAG1AP78358 180 aa1.16□□□□□ -2.22
SS18-214ENST00000580003 USF2Q15853 346 aaPredicted RBP1.16□□□□□ -2.22
SS18-214ENST00000580003 BLIDQ8IZY5 108 aa1.16□□□□□ -2.22
SS18-214ENST00000580003 RNASE6Q93091 150 aaKnown RBP1.16□□□□□ -2.22
SS18-214ENST00000580003 HDGFL3Q9Y3E1 203 aa1.16□□□□□ -2.22
SS18-214ENST00000580003 MYH11P35749 1972 aa1.16□□□□□ -2.22
SS18-214ENST00000580003 FREM1Q5H8C1 2179 aa1.15□□□□□ -2.22
SS18-214ENST00000580003 IGHV1-18A0A0C4DH31 117 aa1.15□□□□□ -2.23
SS18-214ENST00000580003 MT-CO2P00403 227 aa1.15□□□□□ -2.23
SS18-214ENST00000580003 ATP5G1P05496 136 aa1.15□□□□□ -2.23
SS18-214ENST00000580003 TPM1P09493 284 aa1.15□□□□□ -2.23
SS18-214ENST00000580003 PRB4P10163 310 aaPredicted RBP1.15□□□□□ -2.23
SS18-214ENST00000580003 KDELR2P33947 212 aa1.15□□□□□ -2.23
SS18-214ENST00000580003 SMAGPQ0VAQ4 97 aa1.15□□□□□ -2.23
SS18-214ENST00000580003 SURF2Q15527 256 aaPredicted RBP1.15□□□□□ -2.23
SS18-214ENST00000580003 MOGQ16653 247 aa1.15□□□□□ -2.23
SS18-214ENST00000580003 C17orf78Q8N4C9 275 aa1.15□□□□□ -2.23
SS18-214ENST00000580003 PTPRBP23467 1997 aa1.15□□□□□ -2.23
SS18-214ENST00000580003 TMEM94Q12767 1356 aa1.14□□□□□ -2.23
SS18-214ENST00000580003 OR6C6A6NF89 314 aa1.14□□□□□ -2.23
SS18-214ENST00000580003 CREBL2O60519 120 aaPredicted RBP1.14□□□□□ -2.23
SS18-214ENST00000580003 AQP4P55087 323 aa1.14□□□□□ -2.23
SS18-214ENST00000580003 HPCAP84074 193 aa1.14□□□□□ -2.23
SS18-214ENST00000580003 GNA13Q14344 377 aa1.14□□□□□ -2.23
SS18-214ENST00000580003 ELOBQ15370 118 aa1.14□□□□□ -2.23
SS18-214ENST00000580003 Q1T7F1 81 aa1.14□□□□□ -2.23
SS18-214ENST00000580003 LRRC75BQ2VPJ9 315 aa1.14□□□□□ -2.23
SS18-214ENST00000580003 FAM45BPQ6NSW5 357 aa1.14□□□□□ -2.23
SS18-214ENST00000580003 IMMP2LQ96T52 175 aa1.14□□□□□ -2.23
SS18-214ENST00000580003 MROQ9BYG7 248 aa1.14□□□□□ -2.23
SS18-214ENST00000580003 CHMP5Q9NZZ3 219 aa1.14□□□□□ -2.23
SS18-214ENST00000580003 PCYT1BQ9Y5K3 369 aaPredicted RBP1.14□□□□□ -2.23
SS18-214ENST00000580003 REREQ9P2R6 1566 aa1.13□□□□□ -2.23
SS18-214ENST00000580003 A0A0J9YW62 118 aa1.13□□□□□ -2.23
SS18-214ENST00000580003 H7C2G1 150 aa1.13□□□□□ -2.23
SS18-214ENST00000580003 GRPRP30550 384 aa1.13□□□□□ -2.23
SS18-214ENST00000580003 EMX1Q04741 257 aaPredicted RBP1.13□□□□□ -2.23
SS18-214ENST00000580003 DEFB115Q30KQ5 88 aa1.13□□□□□ -2.23
SS18-214ENST00000580003 PPCDCQ96CD2 204 aa1.13□□□□□ -2.23
SS18-214ENST00000580003 ODF3Q96PU9 254 aa1.13□□□□□ -2.23
SS18-214ENST00000580003 RBP7Q96R05 134 aa1.13□□□□□ -2.23
SS18-214ENST00000580003 C1orf109Q9NX04 203 aa1.13□□□□□ -2.23
SS18-214ENST00000580003 PCDH15Q96QU1 1955 aa1.13□□□□□ -2.23
SS18-214ENST00000580003 THSD7AQ9UPZ6 1657 aa1.13□□□□□ -2.23
SS18-214ENST00000580003 CUL9Q8IWT3 2517 aa1.13□□□□□ -2.23
SS18-214ENST00000580003 TRAPPC13A5PLN9 417 aa1.12□□□□□ -2.23
SS18-214ENST00000580003 ZNF879B4DU55 563 aa1.12□□□□□ -2.23
SS18-214ENST00000580003 ORC5O43913 435 aa1.12□□□□□ -2.23
SS18-214ENST00000580003 EVX1P49640 407 aa1.12□□□□□ -2.23
SS18-214ENST00000580003 ZNHIT3Q15649 155 aaPredicted RBP1.12□□□□□ -2.23
SS18-214ENST00000580003 ARHGAP11BQ3KRB8 267 aa1.12□□□□□ -2.23
SS18-214ENST00000580003 DNAL1Q4LDG9 190 aa1.12□□□□□ -2.23
SS18-214ENST00000580003 AADACL4Q5VUY2 407 aa1.12□□□□□ -2.23
SS18-214ENST00000580003 NAA40Q86UY6 237 aa1.12□□□□□ -2.23
SS18-214ENST00000580003 OR10D3Q8NH80 312 aa1.12□□□□□ -2.23
SS18-214ENST00000580003 MED10Q9BTT4 135 aa1.12□□□□□ -2.23
SS18-214ENST00000580003 RBM7Q9Y580 266 aaKnown RBP1.12□□□□□ -2.23
SS18-214ENST00000580003 CHD5Q8TDI0 1954 aa1.11□□□□□ -2.23
SS18-214ENST00000580003 BRI3O95415 125 aa1.11□□□□□ -2.23
SS18-214ENST00000580003 MIPP30301 263 aa1.11□□□□□ -2.23
SS18-214ENST00000580003 HIST1H4AP62805 103 aaKnown RBP1.11□□□□□ -2.23
SS18-214ENST00000580003 FABP5Q01469 135 aa1.11□□□□□ -2.23
SS18-214ENST00000580003 MYOFQ9NZM1 2061 aa1.11□□□□□ -2.23
SS18-214ENST00000580003 FBN2P35556 2912 aa1.1□□□□□ -2.23
SS18-214ENST00000580003 DIDO1Q9BTC0 2240 aaKnown RBP1.1□□□□□ -2.23
SS18-214ENST00000580003 TRAV7A0A075B6U4 112 aa1.1□□□□□ -2.23
SS18-214ENST00000580003 TRAV38-1A0A0B4J264 116 aa1.1□□□□□ -2.23
SS18-214ENST00000580003 A0A0D9SEW6 157 aa1.1□□□□□ -2.23
SS18-214ENST00000580003 C9JCJ5 164 aa1.1□□□□□ -2.23
SS18-214ENST00000580003 HLA-DQB2P05538 268 aa1.1□□□□□ -2.23
SS18-214ENST00000580003 LGALS1P09382 135 aaKnown RBP1.1□□□□□ -2.23
SS18-214ENST00000580003 FKBP1AP62942 108 aaKnown RBP1.1□□□□□ -2.23
SS18-214ENST00000580003 AKR1C1Q04828 323 aa1.1□□□□□ -2.23
SS18-214ENST00000580003 SLAMF1Q13291 335 aa1.1□□□□□ -2.23
SS18-214ENST00000580003 CRLF3Q8IUI8 442 aa1.1□□□□□ -2.23
SS18-214ENST00000580003 TMEM86AQ8N2M4 240 aa1.1□□□□□ -2.23
SS18-214ENST00000580003 C15orf53Q8NAA6 179 aa1.1□□□□□ -2.23
SS18-214ENST00000580003 LFNGQ8NES3 379 aa1.1□□□□□ -2.23
SS18-214ENST00000580003 C19orf60Q96EN9 201 aa1.1□□□□□ -2.23
SS18-214ENST00000580003 ZNF514Q96K75 400 aaPredicted RBP1.1□□□□□ -2.23
SS18-214ENST00000580003 ZNHIT6Q9NWK9 470 aaKnown RBP1.1□□□□□ -2.23
SS18-214ENST00000580003 ROS1P08922 2347 aa1.1□□□□□ -2.23
SS18-214ENST00000580003 TENM3Q9P273 2699 aa1.1□□□□□ -2.23
SS18-214ENST00000580003 INTS1Q8N201 2190 aaKnown RBP1.1□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 207 ms