RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 LINC00205P59089 165 aa8.66□□□□□ -1.02
SS18-213ENST00000579640 ANKRD55Q3KP44 614 aa8.66□□□□□ -1.02
SS18-213ENST00000579640 ZNF585BQ52M93 769 aa8.66□□□□□ -1.02
SS18-213ENST00000579640 ZNF695Q8IW36 515 aa8.66□□□□□ -1.02
SS18-213ENST00000579640 MS4A7Q9GZW8 240 aaPredicted RBP8.66□□□□□ -1.02
SS18-213ENST00000579640 MEGF9Q9H1U4 602 aa8.66□□□□□ -1.02
SS18-213ENST00000579640 PLEKHA2Q9HB19 425 aa8.66□□□□□ -1.02
SS18-213ENST00000579640 COMMD9Q9P000 198 aa8.66□□□□□ -1.02
SS18-213ENST00000579640 A0A0U1RQK1 487 aa8.66□□□□□ -1.02
SS18-213ENST00000579640 H7C2Y5 167 aa8.66□□□□□ -1.02
SS18-213ENST00000579640 TIMM23O14925 209 aa8.66□□□□□ -1.02
SS18-213ENST00000579640 SSNA1O43805 119 aa8.66□□□□□ -1.02
SS18-213ENST00000579640 RAMP3O60896 148 aa8.66□□□□□ -1.02
SS18-213ENST00000579640 LPAR6P43657 344 aa8.66□□□□□ -1.02
SS18-213ENST00000579640 DYNLT3P51808 116 aa8.66□□□□□ -1.02
SS18-213ENST00000579640 BRWD1-AS2P59051 145 aa8.66□□□□□ -1.02
SS18-213ENST00000579640 AANATQ16613 207 aa8.66□□□□□ -1.02
SS18-213ENST00000579640 TMEM177Q53S58 311 aa8.66□□□□□ -1.02
SS18-213ENST00000579640 OR2B11Q5JQS5 317 aa8.66□□□□□ -1.02
SS18-213ENST00000579640 FAM120AOSQ5T036 256 aa8.66□□□□□ -1.02
SS18-213ENST00000579640 DYNAPQ8N1N2 210 aa8.66□□□□□ -1.02
SS18-213ENST00000579640 OR4C13Q8NGP0 309 aa8.66□□□□□ -1.02
SS18-213ENST00000579640 OSR1Q8TAX0 266 aaPredicted RBP8.66□□□□□ -1.02
SS18-213ENST00000579640 C17orf50Q8WW18 174 aa8.66□□□□□ -1.02
SS18-213ENST00000579640 CFHR4Q92496 578 aa8.66□□□□□ -1.02
SS18-213ENST00000579640 RBPMSQ93062 196 aaKnown RBP8.66□□□□□ -1.02
SS18-213ENST00000579640 RNF5Q99942 180 aa8.66□□□□□ -1.02
SS18-213ENST00000579640 AIFM2Q9BRQ8 373 aa8.66□□□□□ -1.02
SS18-213ENST00000579640 VGLL3A8MV65 326 aa8.65□□□□□ -1.02
SS18-213ENST00000579640 CRYZL1O95825 349 aa8.65□□□□□ -1.02
SS18-213ENST00000579640 LY6G6DO95868 133 aa8.65□□□□□ -1.02
SS18-213ENST00000579640 TMEM268Q5VZI3 342 aa8.65□□□□□ -1.02
SS18-213ENST00000579640 THNSL2Q86YJ6 484 aa8.65□□□□□ -1.02
SS18-213ENST00000579640 SELENOHQ8IZQ5 122 aaKnown RBP8.65□□□□□ -1.02
SS18-213ENST00000579640 FLYWCH2Q96CP2 140 aaKnown RBP8.65□□□□□ -1.02
SS18-213ENST00000579640 MED28Q9H204 178 aa8.65□□□□□ -1.02
SS18-213ENST00000579640 DBX1A6NMT0 343 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 FAM90A9PA6NNJ1 464 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 S1PR2O95136 353 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 VENTXO95231 258 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 HRASP01112 189 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 NQO2P16083 231 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 SRP14P37108 136 aaKnown RBP8.64□□□□□ -1.03
SS18-213ENST00000579640 LGALS7P47929 136 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 RRAS2P62070 204 aaPredicted RBP8.64□□□□□ -1.03
SS18-213ENST00000579640 SCGB2A2Q13296 93 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 UXS1Q8NBZ7 420 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 LHFPL5Q8TAF8 219 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 RAB18Q9NP72 206 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 PRR13Q9NZ81 148 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 TMED3Q9Y3Q3 217 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 ZNF469Q96JG9 3925 aaPredicted RBP8.64□□□□□ -1.03
SS18-213ENST00000579640 CSPG4Q6UVK1 2322 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 IGHV3-72A0A0B4J1Y9 119 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 SHOXO15266 292 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 MOSP00540 346 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 IFNA21P01568 189 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 IGKV1-16P04430 117 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 FAM106CPP0CH98 169 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 HLA-GP17693 338 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 VDAC1P21796 283 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 ERVK-16P61578 105 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 EBI3Q14213 229 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 POU2AF1Q16633 256 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 LRRC75BQ2VPJ9 315 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 LIN54Q6MZP7 749 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 CLEC9AQ6UXN8 241 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 FAM219AQ8IW50 185 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 CADM3Q8N126 398 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 SLC35G3Q8N808 338 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 OR2T10Q8NGZ9 312 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 LSM10Q969L4 123 aaKnown RBP8.64□□□□□ -1.03
SS18-213ENST00000579640 R3HDM4Q96D70 268 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 RRNAD1Q96FB5 475 aaKnown RBP8.64□□□□□ -1.03
SS18-213ENST00000579640 HARBI1Q96MB7 349 aa8.64□□□□□ -1.03
SS18-213ENST00000579640 OTOGQ6ZRI0 2925 aa8.63□□□□□ -1.03
SS18-213ENST00000579640 HMX3A6NHT5 357 aa8.63□□□□□ -1.03
SS18-213ENST00000579640 CYSRT1A8MQ03 144 aa8.63□□□□□ -1.03
SS18-213ENST00000579640 IGKV1D-33P01593 117 aa8.63□□□□□ -1.03
SS18-213ENST00000579640 IGKV1-33P01594 117 aa8.63□□□□□ -1.03
SS18-213ENST00000579640 IGKV1-39P01597 117 aa8.63□□□□□ -1.03
SS18-213ENST00000579640 IGKV1D-39P04432 117 aa8.63□□□□□ -1.03
SS18-213ENST00000579640 SNRNP70P08621 437 aaKnown RBP8.63□□□□□ -1.03
SS18-213ENST00000579640 TRAPPC2P0DI81 140 aa8.63□□□□□ -1.03
SS18-213ENST00000579640 TRAPPC2BP0DI82 140 aa8.63□□□□□ -1.03
SS18-213ENST00000579640 AKR1C2P52895 323 aa8.63□□□□□ -1.03
SS18-213ENST00000579640 RPS16P62249 146 aaKnown RBP8.63□□□□□ -1.03
SS18-213ENST00000579640 RNASE11Q8TAA1 199 aaKnown RBP8.63□□□□□ -1.03
SS18-213ENST00000579640 SEC22AQ96IW7 307 aa8.63□□□□□ -1.03
SS18-213ENST00000579640 TSNAXQ99598 290 aaKnown RBP8.63□□□□□ -1.03
SS18-213ENST00000579640 ZANQ9Y493 2812 aa8.63□□□□□ -1.03
SS18-213ENST00000579640 hCG_2014768A0A024R1R8 64 aa8.62□□□□□ -1.03
SS18-213ENST00000579640 A0A1B0GVG6 124 aa8.62□□□□□ -1.03
SS18-213ENST00000579640 MARCH11A6NNE9 402 aa8.62□□□□□ -1.03
SS18-213ENST00000579640 SPDEFO95238 335 aa8.62□□□□□ -1.03
SS18-213ENST00000579640 HOXB5P09067 269 aa8.62□□□□□ -1.03
SS18-213ENST00000579640 SULT1A3P0DMM9 295 aa8.62□□□□□ -1.03
SS18-213ENST00000579640 SULT1A4P0DMN0 295 aa8.62□□□□□ -1.03
SS18-213ENST00000579640 HES1Q14469 280 aa8.62□□□□□ -1.03
SS18-213ENST00000579640 DEFB112Q30KQ8 113 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms